##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138774_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5424507 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.83667068730854 33.0 33.0 33.0 33.0 33.0 2 32.83452284235231 33.0 33.0 33.0 33.0 33.0 3 32.83411045464592 33.0 33.0 33.0 33.0 33.0 4 36.787174023372074 37.0 37.0 37.0 37.0 37.0 5 36.79866741807135 37.0 37.0 37.0 37.0 37.0 6 36.81025833315359 37.0 37.0 37.0 37.0 37.0 7 36.799271159572655 37.0 37.0 37.0 37.0 37.0 8 36.7950211881006 37.0 37.0 37.0 37.0 37.0 9 36.79089049014039 37.0 37.0 37.0 37.0 37.0 10-11 36.7695358306294 37.0 37.0 37.0 37.0 37.0 12-13 36.75568996408337 37.0 37.0 37.0 37.0 37.0 14-15 39.11381863826519 40.0 40.0 40.0 37.0 40.0 16-17 39.073846895210934 40.0 40.0 40.0 37.0 40.0 18-19 39.099844096431255 40.0 40.0 40.0 37.0 40.0 20-21 39.13834880248477 40.0 40.0 40.0 37.0 40.0 22-23 39.15734385363605 40.0 40.0 40.0 37.0 40.0 24-25 39.06756738995398 40.0 40.0 40.0 37.0 40.0 26-27 38.985376375146814 40.0 40.0 40.0 37.0 40.0 28-29 38.95267277944298 40.0 40.0 40.0 37.0 40.0 30-31 38.91305607021526 40.0 40.0 40.0 37.0 40.0 32-33 38.756746315586426 40.0 40.0 40.0 37.0 40.0 34-35 38.82878698133756 40.0 40.0 40.0 37.0 40.0 36-37 38.51237511632496 40.0 37.0 40.0 37.0 40.0 38-39 38.689220915 40.0 37.0 40.0 37.0 40.0 40-41 38.70888523413923 40.0 37.0 40.0 37.0 40.0 42-43 38.665304750958796 40.0 37.0 40.0 37.0 40.0 44-45 38.58833120263744 40.0 37.0 40.0 37.0 40.0 46-47 38.514308074654885 40.0 37.0 40.0 37.0 40.0 48-49 38.47112057078604 40.0 37.0 40.0 37.0 40.0 50-51 38.39382432038683 40.0 37.0 40.0 37.0 40.0 52-53 38.33728302725652 40.0 37.0 40.0 37.0 40.0 54-55 38.258734418909455 40.0 37.0 40.0 37.0 40.0 56-57 38.13315245554719 40.0 37.0 40.0 37.0 40.0 58-59 38.00459677196454 40.0 37.0 40.0 37.0 40.0 60-61 37.84764146459956 40.0 37.0 40.0 33.0 40.0 62-63 37.651997133754776 38.5 37.0 40.0 33.0 40.0 64-65 37.44018478458992 37.0 37.0 40.0 33.0 40.0 66-67 37.203889546632965 37.0 37.0 40.0 33.0 40.0 68-69 36.952560581793456 37.0 37.0 40.0 33.0 40.0 70-71 36.7012856768408 37.0 37.0 40.0 33.0 40.0 72-73 36.45289537081183 37.0 37.0 37.0 33.0 40.0 74-75 36.20127204397301 37.0 37.0 37.0 33.0 40.0 76-77 34.52902931763638 35.0 33.0 37.0 30.0 37.0 78-79 35.80185642026094 37.0 37.0 37.0 33.0 37.0 80-81 35.91672513268364 37.0 37.0 37.0 33.0 37.0 82-83 35.84043842954745 37.0 37.0 37.0 33.0 37.0 84-85 35.72923120321066 37.0 37.0 37.0 33.0 37.0 86-87 35.65368447958815 37.0 37.0 37.0 33.0 37.0 88-89 35.581299528794176 37.0 37.0 37.0 33.0 37.0 90-91 35.51877309544349 37.0 35.0 37.0 33.0 37.0 92-93 35.455358639241574 37.0 33.0 37.0 33.0 37.0 94-95 35.41376657550312 37.0 33.0 37.0 33.0 37.0 96-97 35.371723713267556 37.0 33.0 37.0 33.0 37.0 98-99 35.331891033196435 37.0 33.0 37.0 33.0 37.0 100 35.24739881936446 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 5.0 19 2.0 20 25.0 21 85.0 22 370.0 23 1029.0 24 2471.0 25 4984.0 26 8997.0 27 14362.0 28 21461.0 29 30051.0 30 40770.0 31 55532.0 32 74066.0 33 102139.0 34 147175.0 35 231774.0 36 470040.0 37 1531015.0 38 2573804.0 39 114350.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.68208128076547 20.011886796696327 14.43871570978076 23.867316212757437 2 14.596573402260042 20.611425261581424 41.78911406863593 23.00288726752261 3 18.10768769043356 25.826514840913312 30.65814428854169 25.407653180111435 4 12.52788554421132 18.143899088210233 38.283646251900755 31.04456911567769 5 13.479298119867805 37.40878122592502 35.3916584123873 13.720262241819874 6 30.093855551086122 37.40860458076736 18.620368380088436 13.877171488058082 7 26.479148516012334 32.72038043648583 22.56000822932079 18.240462818181047 8 24.630279697358617 36.13838753243152 21.054857345535243 18.176475424674614 9 25.44189277327742 16.866604995920365 20.98869463873761 36.70280759206461 10-11 24.201031006230707 26.562213539609548 28.66534494889074 20.571410505269007 12-13 25.228569158450714 24.126893006129404 28.645119270746633 21.999418564673253 14-15 22.378890837453064 25.595100163019424 26.311211322982896 25.714797676544617 16-17 21.927918979549663 28.769425498022215 26.972829051561735 22.329826470866383 18-19 21.9588895359523 27.659942184607743 28.792487501629182 21.588680777810776 20-21 22.644524100623403 26.80148159509655 28.824774759495202 21.729219544784847 22-23 22.377149618389993 27.032822138680814 28.67243115307826 21.917597089850936 24-25 22.35385379413717 27.17675557921754 28.629425841776442 21.839964784868855 26-27 22.21577401852321 27.355916175115453 28.63524430038364 21.793065505977697 28-29 22.015074856197085 27.195018046127384 28.697719932155945 22.092187165519587 30-31 22.552917401470093 27.119427595602403 28.60585504681697 21.721799956110534 32-33 22.357021952437588 27.22898689845875 28.622450330598515 21.791540818505148 34-35 22.28495846527247 27.327580814866494 28.78294348764018 21.60451723222086 36-37 22.384320931971637 27.244366646006114 28.487297299764496 21.88401512225775 38-39 22.058845699452473 27.11840426072821 28.713321395808357 22.109428644010965 40-41 22.270028888104708 26.952358648843827 28.70703829383647 22.070574169215 42-43 22.335979083580995 26.983191364049674 28.52296281924835 22.15786673312098 44-45 22.20398760411362 27.268053442992148 28.297490948626397 22.230468004267838 46-47 22.541825783348116 27.101797236908432 27.79355435595666 22.562822623786797 48-49 22.339561672275522 27.26657259523078 27.835430277530204 22.558435454963494 50-51 22.304016822505282 27.50357361479685 27.770801214788648 22.42160834790922 52-53 22.419610151565564 27.476736399085393 27.823157007677736 22.280496441671303 54-55 22.321809985592 27.467185869569978 27.63894523407327 22.572058910764756 56-57 22.564849513039654 27.64558403677737 27.36163046935288 22.4279359808301 58-59 22.24486929818939 27.912342248012212 27.662022868551546 22.18076558524685 60-61 22.526899140472057 28.012299610970086 27.286024606374543 22.174776642183318 62-63 22.315176427528566 28.240130413649993 27.22047709639664 22.224216062424798 64-65 22.37374438658211 28.05579256392898 27.222593692555275 22.34786935693364 66-67 22.42326633688858 27.90238214731633 27.184305748867203 22.490045766927885 68-69 22.467516206598365 27.688696913300358 27.31441200431146 22.529374875789816 70-71 22.4718440637697 27.451280155885417 27.40254174014124 22.674334040203647 72-73 22.587743276640246 27.40060522574016 27.304089088742025 22.70756240887757 74-75 22.458921523722804 27.562762097271857 27.266004218240464 22.712312160764878 76-77 22.60852474554651 27.50238065710565 27.2155391579339 22.673555439413935 78-79 22.580206228215083 27.48835948222127 27.16319086312294 22.768243426440705 80-81 22.61368490225998 27.512835943375325 27.19641803495091 22.677061119413786 82-83 22.696469422866734 27.424251194789882 27.276625755124673 22.602653627218704 84-85 22.775230567386355 27.413858981237144 27.199952547299507 22.610957904076997 86-87 22.636120830417543 27.44862374620947 27.283834849545137 22.63142057382785 88-89 22.658831590075962 27.37974826101749 27.2614909641307 22.699929184775847 90-91 22.70339397928681 27.3918014138984 27.246784969429918 22.65801963738488 92-93 22.800234689025555 27.266362492989373 27.352889865537406 22.580512952447666 94-95 22.67870528117379 27.308029809957052 27.358393574808996 22.654871334060157 96-97 22.77081458836422 27.44718846672266 27.38485910520188 22.397137839711238 98-99 23.896779281266607 29.34272874597104 27.537686350811047 19.2228056219513 100 22.722289985281012 30.326211837238326 21.423250898509828 25.528247278970834 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 828.0 1 788.0 2 1146.0 3 1699.0 4 2408.0 5 4029.0 6 5470.0 7 6523.5 8 7414.0 9 7655.5 10 7373.0 11 7048.5 12 7681.5 13 9963.5 14 15283.0 15 22561.0 16 28649.5 17 32670.5 18 34009.0 19 32459.0 20 29454.5 21 26166.0 22 24137.5 23 24746.5 24 27621.0 25 33162.5 26 41101.5 27 50122.5 28 60734.5 29 72695.0 30 84330.5 31 96089.5 32 108111.5 33 119857.0 34 131678.0 35 142347.0 36 153273.0 37 164674.0 38 174112.0 39 181900.5 40 190546.5 41 198073.5 42 202427.0 43 206769.5 44 210646.0 45 215366.0 46 222162.5 47 228800.0 48 236244.5 49 234779.0 50 226770.5 51 221075.0 52 213002.5 53 200444.0 54 188077.0 55 176771.0 56 163721.5 57 149635.0 58 134380.5 59 117147.5 60 97512.5 61 79529.5 62 63452.0 63 49190.5 64 37387.0 65 27966.5 66 20773.5 67 15672.0 68 11953.0 69 8484.0 70 5834.5 71 4165.0 72 2855.5 73 1874.5 74 1225.0 75 786.5 76 507.5 77 316.5 78 203.0 79 134.5 80 86.5 81 53.5 82 34.5 83 20.0 84 12.5 85 11.0 86 8.5 87 7.5 88 6.0 89 3.5 90 2.0 91 1.0 92 1.0 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 1.8434855001569727E-5 2 1.8434855001569727E-5 3 7.926987650674983E-4 4 0.01839798529156659 5 8.848730400753469E-4 6 1.8434855001569727E-5 7 1.8434855001569727E-5 8 1.8434855001569727E-5 9 1.8434855001569727E-5 10-11 9.217427500784864E-6 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 2.7652697967738702E-5 22-23 0.0 24-25 0.007781540084796659 26-27 0.051105284356498144 28-29 0.08496369573622131 30-31 0.07528931797816729 32-33 0.03524450225562963 34-35 0.004027380246683536 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 3.384017286356538E-4 56-57 7.025274831260425E-4 58-59 2.0250734468825766E-5 60-61 2.0435995840457405E-5 62-63 2.0625928875815718E-5 64-65 2.0833352864601645E-5 66-67 0.0 68-69 0.0 70-71 6.459693076296405E-5 72-73 0.013051886410551923 74-75 0.028142935843428758 76-77 0.003908554008853263 78-79 0.0 80-81 0.0 82-83 0.010719677354835705 84-85 0.05001264734036179 86-87 0.0407461619039125 88-89 0.010317556708239542 90-91 1.4324949298632575E-4 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 48.0 20-21 159.0 22-23 505.0 24-25 2165.0 26-27 1915.0 28-29 4289.0 30-31 10180.0 32-33 13044.0 34-35 18335.0 36-37 26420.0 38-39 31410.0 40-41 33861.0 42-43 40319.0 44-45 48018.0 46-47 46580.0 48-49 41649.0 50-51 36989.0 52-53 35436.0 54-55 39926.0 56-57 43926.0 58-59 44738.0 60-61 45061.0 62-63 47142.0 64-65 51638.0 66-67 55519.0 68-69 49788.0 70-71 44095.0 72-73 41838.0 74-75 43187.0 76-77 42984.0 78-79 45650.0 80-81 46495.0 82-83 45070.0 84-85 45658.0 86-87 47719.0 88-89 50720.0 90-91 52989.0 92-93 54809.0 94-95 60758.0 96-97 174076.0 98-99 329944.0 100-101 3529455.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.90161488195679 #Duplication Level Percentage of deduplicated Percentage of total 1 91.48376386588782 80.41570579291147 2 6.2769205108338735 11.035028987759494 3 1.3033299492287056 3.43694421783666 4 0.44319646612992525 1.5583074033118758 5 0.1906837021548968 0.8380702675542747 6 0.09805770991897284 0.517165863210251 7 0.05790502230640967 0.35629614793563985 8 0.03583953214763296 0.2520282201912594 9 0.021944382918559328 0.1736052026516454 >10 0.0858906969411615 1.1996837186373128 >50 0.0019648963189182974 0.11654517442963713 >100 4.721947896915923E-4 0.0843960296108487 >500 3.1070423460582875E-5 0.01622297395967374 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 1.8434855001569727E-5 0.0 0.0 0.0 9 0.0 1.8434855001569727E-5 0.0 0.0 0.0 10-11 0.0 2.765228250235459E-5 0.0 1.8434855001569727E-5 0.0 12-13 0.0 3.6869710003139454E-5 0.0 1.8434855001569727E-5 0.0 14-15 0.0 1.1060913000941836E-4 0.0 2.765228250235459E-5 0.0 16-17 0.0 1.3826141251177296E-4 0.0 4.608713750392432E-5 0.0 18-19 0.0 1.6591369501412753E-4 0.0 8.295684750706377E-5 0.0 20-21 9.217427500784864E-6 1.8434855001569727E-4 0.0 1.566962675133427E-4 0.0 22-23 1.8434855001569727E-5 2.2121826001883673E-4 0.0 5.069585125431675E-4 0.0 24-25 1.8434855001569727E-5 2.580879700219762E-4 0.0 0.0012996572776106659 0.0 26-27 3.6869710003139454E-5 2.765228250235459E-4 0.0 0.003935841542835137 0.0 28-29 3.6869710003139454E-5 2.765228250235459E-4 0.0 0.01229604828604701 0.0 30-31 3.6869710003139454E-5 3.2260996252747023E-4 0.0 0.013641792701161597 0.0 32-33 3.6869710003139454E-5 3.5026224502982483E-4 0.0 0.01619502011887901 0.0 34-35 4.608713750392432E-5 4.7008880254002805E-4 0.0 0.019808251699186673 0.0 36-37 5.530456500470918E-5 5.899153600502313E-4 0.0 0.02520044678714582 0.0 38-39 5.530456500470918E-5 5.899153600502313E-4 0.0 0.03888832662581134 0.0 40-41 5.530456500470918E-5 6.820896350580799E-4 0.0 0.05353481892455849 0.0 42-43 5.530456500470918E-5 7.005244900596497E-4 0.0 0.06352651033540929 9.217427500784864E-6 44-45 7.373942000627891E-5 8.480033300722076E-4 0.0 0.07579490633895394 1.8434855001569727E-5 46-47 9.217427500784864E-5 9.770473150831956E-4 0.0 0.08919704592509513 1.8434855001569727E-5 48-49 9.217427500784864E-5 9.770473150831956E-4 0.0 0.10137326765363194 1.8434855001569727E-5 50-51 9.217427500784864E-5 0.0010323518800879048 0.0 0.1136969682221813 1.8434855001569727E-5 52-53 9.217427500784864E-5 0.0010507867350894745 0.0 0.14246455945213088 1.8434855001569727E-5 54-55 9.217427500784864E-5 0.0010692215900910441 0.0 0.17920522547025933 1.8434855001569727E-5 56-57 9.217427500784864E-5 0.001087656445092614 0.0 0.21614867489340506 1.8434855001569727E-5 58-59 9.217427500784864E-5 0.001087656445092614 0.0 0.2396899847304096 1.8434855001569727E-5 60-61 9.217427500784864E-5 0.0011060913000941837 0.0 0.2559679616967957 1.8434855001569727E-5 62-63 1.013917025086335E-4 0.0011060913000941837 0.0 0.2690382738929086 1.8434855001569727E-5 64-65 1.1060913000941836E-4 0.0011982655751020324 0.0 0.2759236922359949 1.8434855001569727E-5 66-67 1.1060913000941836E-4 0.0011982655751020324 0.0 0.2826247620290655 2.765228250235459E-5 68-69 1.1060913000941836E-4 0.0011982655751020324 0.0 0.2894364409521455 3.6869710003139454E-5 70-71 1.1060913000941836E-4 0.0012074830026028173 0.0 0.2944230692300701 3.6869710003139454E-5 72-73 1.1060913000941836E-4 0.001216700430103602 0.0 0.29807317052038096 3.6869710003139454E-5 74-75 1.1060913000941836E-4 0.0012351352851051717 0.0 0.30086605105311875 3.6869710003139454E-5 76-77 1.1060913000941836E-4 0.001281222422609096 0.0 0.30400919383088637 3.6869710003139454E-5 78-79 1.1060913000941836E-4 0.001290439850109881 0.0 0.30623981128607636 3.6869710003139454E-5 80-81 1.1060913000941836E-4 0.001290439850109881 0.0 0.3067928569361234 5.530456500470918E-5 82-83 1.1060913000941836E-4 0.0012996572776106659 0.0 0.30730903287616734 7.373942000627891E-5 84-85 1.1060913000941836E-4 0.0013088747051114506 0.0 0.3075302511361862 7.373942000627891E-5 86-87 1.1060913000941836E-4 0.0013273095601130205 0.0 0.3076132079836933 7.373942000627891E-5 88 1.1060913000941836E-4 0.001419483835120869 0.0 0.30762242541119406 7.373942000627891E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7160 0.0 51.67591 1 GTATCAA 13265 0.0 38.53711 1 CTTATAC 6070 0.0 32.019123 1 TCAACGC 16360 0.0 30.648441 4 ATCAACG 16575 0.0 30.251171 3 CAACGCA 16820 0.0 29.85532 5 TATCAAC 17010 0.0 29.702572 2 AACGCAG 17290 0.0 29.043753 6 TATACAC 8145 0.0 26.733807 3 ACGCAGA 19655 0.0 25.613945 7 CGCAGAG 19945 0.0 25.220201 8 TTATACA 8315 0.0 24.345943 2 GTGGTAT 3470 0.0 22.306108 1 TGGTATC 3285 0.0 21.87929 2 GCAGAGT 23155 0.0 21.61372 9 GTACATG 15675 0.0 20.538572 1 TACATGG 15625 0.0 20.250458 2 ACACATC 9755 0.0 20.094236 6 ACATCTC 9955 0.0 19.94681 8 GAGTACT 14600 0.0 19.876852 12-13 >>END_MODULE