##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138773_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5007747 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.83810084654836 33.0 33.0 33.0 33.0 33.0 2 32.834033947801274 33.0 33.0 33.0 33.0 33.0 3 32.833443063317695 33.0 33.0 33.0 33.0 33.0 4 36.78858496645298 37.0 37.0 37.0 37.0 37.0 5 36.798923947236155 37.0 37.0 37.0 37.0 37.0 6 36.8092725131681 37.0 37.0 37.0 37.0 37.0 7 36.79944733629714 37.0 37.0 37.0 37.0 37.0 8 36.79616182686546 37.0 37.0 37.0 37.0 37.0 9 36.79033685208139 37.0 37.0 37.0 37.0 37.0 10-11 36.77011178879444 37.0 37.0 37.0 37.0 37.0 12-13 36.755885830494236 37.0 37.0 37.0 37.0 37.0 14-15 39.111981495870296 40.0 40.0 40.0 37.0 40.0 16-17 39.07311421683244 40.0 40.0 40.0 37.0 40.0 18-19 39.10077975185248 40.0 40.0 40.0 37.0 40.0 20-21 39.14025726413088 40.0 40.0 40.0 37.0 40.0 22-23 39.15826278348591 40.0 40.0 40.0 37.0 40.0 24-25 39.06738019924205 40.0 40.0 40.0 37.0 40.0 26-27 38.99036465687165 40.0 40.0 40.0 37.0 40.0 28-29 38.96773887513413 40.0 40.0 40.0 37.0 40.0 30-31 38.92638036128403 40.0 40.0 40.0 37.0 40.0 32-33 38.7741912240555 40.0 40.0 40.0 37.0 40.0 34-35 38.844457940790775 40.0 40.0 40.0 37.0 40.0 36-37 38.5288381352343 40.0 37.0 40.0 37.0 40.0 38-39 38.71284704205987 40.0 37.0 40.0 37.0 40.0 40-41 38.72271405144241 40.0 37.0 40.0 37.0 40.0 42-43 38.67238878882952 40.0 37.0 40.0 37.0 40.0 44-45 38.58576400545864 40.0 37.0 40.0 37.0 40.0 46-47 38.50802353369224 40.0 37.0 40.0 37.0 40.0 48-49 38.4597915007575 40.0 37.0 40.0 37.0 40.0 50-51 38.39476704047784 40.0 37.0 40.0 37.0 40.0 52-53 38.340386410666305 40.0 37.0 40.0 37.0 40.0 54-55 38.24927299100915 40.0 37.0 40.0 37.0 40.0 56-57 38.11548851802962 40.0 37.0 40.0 37.0 40.0 58-59 37.98337197501195 40.0 37.0 40.0 37.0 40.0 60-61 37.81936328425872 40.0 37.0 40.0 33.0 40.0 62-63 37.62623478026668 38.5 37.0 40.0 33.0 40.0 64-65 37.40308551270002 37.0 37.0 40.0 33.0 40.0 66-67 37.16068694651066 37.0 37.0 40.0 33.0 40.0 68-69 36.90410430462498 37.0 37.0 40.0 33.0 40.0 70-71 36.64984140901035 37.0 37.0 40.0 33.0 40.0 72-73 36.39971842827315 37.0 37.0 37.0 33.0 40.0 74-75 36.15236084056295 37.0 37.0 37.0 33.0 40.0 76-77 34.47069527734152 35.0 33.0 37.0 30.0 37.0 78-79 35.76727845431543 37.0 35.0 37.0 33.0 37.0 80-81 35.88994946726284 37.0 37.0 37.0 33.0 37.0 82-83 35.81756800793111 37.0 37.0 37.0 33.0 37.0 84-85 35.70810322937244 37.0 37.0 37.0 33.0 37.0 86-87 35.63177079174075 37.0 37.0 37.0 33.0 37.0 88-89 35.56049879084467 37.0 37.0 37.0 33.0 37.0 90-91 35.49631839567027 37.0 35.0 37.0 33.0 37.0 92-93 35.43260350253843 37.0 33.0 37.0 33.0 37.0 94-95 35.387479248773516 37.0 33.0 37.0 33.0 37.0 96-97 35.34833890259033 37.0 33.0 37.0 33.0 37.0 98-99 35.30221899263811 37.0 33.0 37.0 33.0 37.0 100 35.21028952126301 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 1.0 20 7.0 21 73.0 22 281.0 23 870.0 24 2120.0 25 4289.0 26 7916.0 27 13021.0 28 19228.0 29 27481.0 30 38279.0 31 51304.0 32 68766.0 33 94531.0 34 137523.0 35 216088.0 36 440923.0 37 1447048.0 38 2340664.0 39 97334.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.00913105234749 19.833410114368796 14.354419262794227 23.803039570489485 2 14.768557596859427 20.62889758608013 41.55134035325666 23.05120446380378 3 18.153952021515654 25.864553069541063 30.4620901039858 25.519404804957485 4 12.61761221145711 17.992481287105218 38.14304728775874 31.246859213678928 5 13.594853050419914 37.310272332390255 35.191876356909276 13.90299826028056 6 30.209633194328706 37.25909076476906 18.58376631247545 13.947509728426777 7 26.73583549648175 32.63401685428597 22.431045338352757 18.19910231087952 8 24.74104622298211 35.991335025511475 20.95571122103413 18.311907530472286 9 25.642090145528517 16.85222915614547 20.85684440527846 36.64883629304755 10-11 24.315695261761427 26.486152355540327 28.495489089205183 20.70266329349306 12-13 25.361055580483598 24.101447217680924 28.515058767944947 22.022438433890528 14-15 22.516443023179885 25.458604438283324 26.266682402285895 25.758270136250893 16-17 22.035368400200728 28.687581461283884 26.846184521702078 22.430865616813307 18-19 22.015039897183307 27.54345417210574 28.761876348785194 21.679629581925763 20-21 22.75690606907342 26.57166520972693 28.837601725762173 21.833826995437473 22-23 22.457041490902537 26.714912869753725 28.692544538701227 22.135501100642514 24-25 22.293949148096676 26.94442296931694 28.74688535737908 22.014742525207303 26-27 22.15870826179641 26.98976116038516 28.754350319760686 22.097180258057744 28-29 21.921524280306073 26.83472339543399 28.857110927265783 22.386641396994154 30-31 22.222431416597658 26.68621988690084 28.8526735591985 22.238675137303005 32-33 22.020015122483493 26.987714837868644 28.759510984865276 22.23275905478259 34-35 22.142234591634622 27.167993160137655 28.85919818820862 21.83057406001911 36-37 22.35363284325469 27.035805604402857 28.36502627864833 22.245535273694124 38-39 22.123640044711415 26.969807623255615 28.638147924996805 22.268404407036165 40-41 22.34783020383042 26.87032974926632 28.57212386427849 22.209716182624774 42-43 22.40416220925223 26.914273150219653 28.40512487726599 22.27643976326213 44-45 22.340431369402435 27.130086372236644 28.143413631645835 22.386068626715087 46-47 22.643583689204323 27.01692766775226 27.68414854045434 22.655340102589076 48-49 22.508461159637235 27.171031663150696 27.645347914681693 22.675159262530375 50-51 22.44673452614276 27.402884780389996 27.575616704290617 22.574763989176628 52-53 22.553096683186848 27.36963150301543 27.61392429309827 22.46334752069945 54-55 22.49547900945582 27.341355801416974 27.459655952080738 22.703509237046475 56-57 22.697947672843974 27.51845527869695 27.229161160040192 22.55443588841888 58-59 22.37080175977074 27.714789520173884 27.52127784756995 22.39313087248543 60-61 22.68163673217314 27.812146171810433 27.18105734239885 22.32515975361758 62-63 22.458693722427167 28.024480437507528 27.132001659388255 22.38482418067705 64-65 22.497576933078324 27.887806091607125 27.080443570401773 22.534173404912774 66-67 22.557900904322533 27.76438407210284 27.04417238444246 22.633542639132166 68-69 22.578195868247704 27.610888627582348 27.131524340497627 22.679391163672328 70-71 22.59184173819045 27.37065122706394 27.21718697471578 22.82032006002983 72-73 22.663591223624856 27.3427284205821 27.11598263204806 22.877697723744983 74-75 22.570913360969254 27.515277519744842 27.097547796761123 22.816261322524785 76-77 22.689180620162155 27.42535580802514 27.058672335926794 22.82679123588591 78-79 22.602481624835015 27.463282756762027 27.018585115304234 22.91565050309872 80-81 22.633976912414536 27.50236202562652 27.007940488618537 22.85572057334041 82-83 22.696584951599284 27.456814879538182 27.091146498065932 22.755453670796598 84-85 22.78270842558154 27.451852013461252 27.02767966893285 22.73775989202435 86-87 22.689397771125183 27.47199133449047 27.08904432009503 22.749566574289318 88-89 22.711128812571925 27.444459523570718 27.042432872135514 22.80197879172184 90-91 22.70219811237383 27.482588306703637 27.039310645685198 22.775902935237337 92-93 22.740987476027424 27.419062630215414 27.094368482759158 22.74558141099801 94-95 22.597112828044388 27.471510482074656 27.162302613792622 22.76907407608833 96-97 22.750595765761418 27.547547216420696 27.15217963701572 22.549677380802162 98-99 23.85795166609838 29.522286108426123 27.318291504502053 19.301470720973455 100 22.755174823227094 30.413840540484898 21.193130833142604 25.6378538031454 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1338.0 1 1173.5 2 1444.5 3 2004.0 4 2719.0 5 4387.5 6 5777.5 7 6753.5 8 7482.5 9 7548.5 10 7225.5 11 6843.0 12 7457.5 13 9715.0 14 14846.5 15 21864.5 16 28011.0 17 32060.0 18 32868.0 19 30931.0 20 27715.0 21 23999.0 22 21480.5 23 21583.0 24 24082.0 25 29059.5 26 35736.5 27 43349.0 28 52220.5 29 62381.0 30 73033.5 31 83717.5 32 94770.0 33 105367.0 34 116136.5 35 126552.5 36 137415.5 37 148550.0 38 157552.5 39 165358.0 40 172885.0 41 179753.0 42 184113.5 43 188506.5 44 195039.5 45 203514.0 46 210820.0 47 215533.0 48 215480.0 49 211646.5 50 208319.0 51 202000.5 52 193968.5 53 185521.0 54 176036.5 55 165481.5 56 153588.5 57 140716.5 58 126741.5 59 110873.5 60 93040.0 61 76087.0 62 61217.5 63 47889.0 64 36347.0 65 27095.5 66 20261.5 67 15522.5 68 11873.5 69 8612.5 70 6159.5 71 4392.0 72 2995.5 73 2030.5 74 1396.0 75 923.0 76 605.0 77 382.5 78 240.5 79 154.5 80 105.0 81 78.5 82 56.0 83 33.0 84 20.5 85 16.5 86 13.5 87 12.5 88 10.0 89 6.5 90 3.5 91 2.0 92 1.5 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 8.786386372953746E-4 4 0.02074785327613396 5 8.586695773568433E-4 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 1.9969472667133753E-5 22-23 0.0 24-25 0.0077104744798276205 26-27 0.05180461915362143 28-29 0.08634757648502987 30-31 0.07634324177681516 32-33 0.03636859890850084 34-35 0.004704999071566957 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 2.478725262726018E-4 56-57 8.039202628428163E-4 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 2.321697681065139E-5 72-73 0.013586267469333979 74-75 0.029903179153360777 76-77 0.004220055635592235 78-79 0.0 80-81 0.0 82-83 0.011264414585429051 84-85 0.0515291290734681 86-87 0.041860257321071175 88-89 0.011027766322137495 90-91 1.2789298733335066E-4 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 61.0 20-21 259.0 22-23 643.0 24-25 1954.0 26-27 2138.0 28-29 3967.0 30-31 9515.0 32-33 12088.0 34-35 16764.0 36-37 23970.0 38-39 28613.0 40-41 30530.0 42-43 37024.0 44-45 44304.0 46-47 43740.0 48-49 38064.0 50-51 33613.0 52-53 32474.0 54-55 35787.0 56-57 38643.0 58-59 40181.0 60-61 39964.0 62-63 41074.0 64-65 44137.0 66-67 47461.0 68-69 43592.0 70-71 38941.0 72-73 37043.0 74-75 37676.0 76-77 37791.0 78-79 40387.0 80-81 40845.0 82-83 38944.0 84-85 40001.0 86-87 41208.0 88-89 43451.0 90-91 45552.0 92-93 46975.0 94-95 55957.0 96-97 162023.0 98-99 307285.0 100-101 3303108.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.32634908495866 #Duplication Level Percentage of deduplicated Percentage of total 1 91.78606923157459 81.0712839208424 2 6.096990022852868 10.77049738252025 3 1.2334016710251372 3.268255996708129 4 0.42924108014124424 1.5165318994464103 5 0.1735244776028829 0.7663391791768664 6 0.09218659718228253 0.48855033382060536 7 0.05216622852524429 0.32253567578165193 8 0.03372298144765988 0.23829022652252732 9 0.021581756792113042 0.17156140058581687 >10 0.07836899097015597 1.1007014004549782 >50 0.0019431254993333156 0.11386317063187344 >100 7.70605603278744E-4 0.1564440201140975 >500 3.323078321494873E-5 0.015145393394428358 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 7.987623975412497E-5 0.0 0.0 0.0 3 0.0 7.987623975412497E-5 0.0 0.0 0.0 4 0.0 9.98452996926562E-5 0.0 0.0 0.0 5 1.996905993853124E-5 1.1981435963118743E-4 0.0 0.0 0.0 6 3.993811987706248E-5 1.1981435963118743E-4 0.0 0.0 0.0 7 3.993811987706248E-5 1.1981435963118743E-4 0.0 0.0 0.0 8 3.993811987706248E-5 1.397834195697187E-4 0.0 0.0 0.0 9 3.993811987706248E-5 3.1950495901649986E-4 0.0 0.0 0.0 10-11 3.993811987706248E-5 3.1950495901649986E-4 0.0 0.0 0.0 12-13 3.993811987706248E-5 3.1950495901649986E-4 0.0 0.0 0.0 14-15 3.993811987706248E-5 4.19350258709156E-4 0.0 0.0 9.98452996926562E-6 16-17 4.9922649846328103E-5 4.19350258709156E-4 0.0 0.0 1.996905993853124E-5 18-19 5.990717981559372E-5 4.2933478867842164E-4 0.0 0.0 1.996905993853124E-5 20-21 5.990717981559372E-5 4.3931931864768726E-4 0.0 0.0 1.996905993853124E-5 22-23 5.990717981559372E-5 4.692729085554841E-4 0.0 2.9953589907796862E-5 1.996905993853124E-5 24-25 5.990717981559372E-5 5.191955584018123E-4 0.0 3.993811987706248E-5 1.996905993853124E-5 26-27 5.990717981559372E-5 5.191955584018123E-4 0.0 8.986076972339059E-5 1.996905993853124E-5 28-29 5.990717981559372E-5 5.191955584018123E-4 0.0 2.795668391394373E-4 1.996905993853124E-5 30-31 7.987623975412497E-5 5.591336782788748E-4 0.0 8.886231672646402E-4 1.996905993853124E-5 32-33 7.987623975412497E-5 5.591336782788748E-4 0.0 0.00241625625256228 1.996905993853124E-5 34-35 7.987623975412497E-5 6.689635079407965E-4 0.0 0.00467276002561631 1.996905993853124E-5 36-37 7.987623975412497E-5 7.787933376027183E-4 0.0 0.008347067054306058 1.996905993853124E-5 38-39 7.987623975412497E-5 7.987623975412495E-4 0.0 0.016963716417782288 1.996905993853124E-5 40-41 7.987623975412497E-5 8.886231672646401E-4 0.0 0.026019685099906206 1.996905993853124E-5 42-43 7.987623975412497E-5 9.285612871417026E-4 0.0 0.03297890248848434 1.996905993853124E-5 44-45 8.986076972339059E-5 0.0010483756467728903 0.0 0.04133595407275967 1.996905993853124E-5 46-47 9.98452996926562E-5 0.0011182673565577495 0.0 0.05014230950565194 2.9953589907796862E-5 48-49 9.98452996926562E-5 0.0011282518865270152 0.0 0.05817985613091077 3.993811987706248E-5 50-51 1.1981435963118743E-4 0.001238081716188937 0.0 0.06597777403690722 3.993811987706248E-5 52-53 1.1981435963118743E-4 0.001238081716188937 0.0 0.08448909259992568 3.993811987706248E-5 54-55 1.1981435963118743E-4 0.0012480662461582027 0.0 0.10738361981945174 3.993811987706248E-5 56-57 1.1981435963118743E-4 0.0012580507761274682 0.0 0.1313564762756585 3.993811987706248E-5 58-59 1.1981435963118743E-4 0.0012580507761274682 0.0 0.15289310741936446 3.993811987706248E-5 60-61 1.2979888960045307E-4 0.0012680353060967337 0.0 0.1634168020069704 3.993811987706248E-5 62-63 1.5975247950824993E-4 0.0012780198360659994 0.0 0.1750288103612263 5.990717981559372E-5 64-65 1.5975247950824993E-4 0.0014577413755127804 0.0 0.18067006979386138 5.990717981559372E-5 66-67 1.7972153944678115E-4 0.0014876949654205772 0.0 0.18666078777542078 5.990717981559372E-5 68-69 1.996905993853124E-4 0.0015875402651132336 0.0 0.19235196985790215 5.990717981559372E-5 70-71 1.996905993853124E-4 0.0016174938550210303 0.0 0.19714454424314967 5.990717981559372E-5 72-73 1.996905993853124E-4 0.001647447444928827 0.0 0.20043943913300732 5.990717981559372E-5 74-75 1.996905993853124E-4 0.0016973700947751553 0.0 0.20348472077363333 5.990717981559372E-5 76-77 1.996905993853124E-4 0.0017772463345292803 0.0 0.20635028087481255 5.990717981559372E-5 78-79 1.996905993853124E-4 0.0018171844544063427 0.0 0.20815748079924964 5.990717981559372E-5 80-81 1.996905993853124E-4 0.0018171844544063427 0.0 0.20891630507691383 5.990717981559372E-5 82-83 1.996905993853124E-4 0.0018171844544063427 0.0 0.209185887386084 5.990717981559372E-5 84-85 1.996905993853124E-4 0.0018171844544063427 0.0 0.2094754387551927 5.990717981559372E-5 86-87 1.996905993853124E-4 0.0018571225742834052 0.0 0.2095852685848546 5.990717981559372E-5 88 1.996905993853124E-4 0.0020368441137301866 0.0 0.20959525311482388 5.990717981559372E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7165 0.0 51.214626 1 GTATCAA 13305 0.0 39.28556 1 CTTATAC 4555 0.0 32.69255 1 TCAACGC 16195 0.0 31.616373 4 ATCAACG 16385 0.0 31.197668 3 CAACGCA 16595 0.0 30.872616 5 TATCAAC 16875 0.0 30.519348 2 AACGCAG 16870 0.0 30.470505 6 ACGCAGA 19150 0.0 26.842684 7 TATACAC 6440 0.0 26.568697 3 CGCAGAG 19495 0.0 26.345772 8 TTATACA 6500 0.0 24.616692 2 GCAGAGT 22730 0.0 22.521095 9 GTGGTAT 3465 0.0 22.042536 1 TGGTATC 3355 0.0 21.493439 2 GTACATG 15755 0.0 21.17874 1 GAGTACT 13835 0.0 20.936222 12-13 TACATGG 15940 0.0 20.370802 2 TACACAT 8415 0.0 20.176071 5 TATACCG 260 2.39379E-9 19.688633 5 >>END_MODULE