##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138772_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5906337 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.89432705922469 33.0 33.0 33.0 33.0 33.0 2 32.95176976864002 33.0 33.0 33.0 33.0 33.0 3 33.6223781338586 33.0 33.0 33.0 33.0 37.0 4 36.788062042514674 37.0 37.0 37.0 37.0 37.0 5 36.80236887939174 37.0 37.0 37.0 37.0 37.0 6 36.805956720722165 37.0 37.0 37.0 37.0 37.0 7 36.80053508629799 37.0 37.0 37.0 37.0 37.0 8 36.786840981136024 37.0 37.0 37.0 37.0 37.0 9 36.788981563361524 37.0 37.0 37.0 37.0 37.0 10-11 36.78211334707112 37.0 37.0 37.0 37.0 37.0 12-13 37.03633902027602 37.0 37.0 37.0 37.0 38.5 14-15 39.10778372449794 40.0 40.0 40.0 37.0 40.0 16-17 39.06634535076478 40.0 40.0 40.0 37.0 40.0 18-19 39.10191519718567 40.0 40.0 40.0 37.0 40.0 20-21 39.1406043168993 40.0 40.0 40.0 37.0 40.0 22-23 39.156984941841635 40.0 40.0 40.0 37.0 40.0 24-25 39.04850737971023 40.0 40.0 40.0 37.0 40.0 26-27 38.9838410611883 40.0 40.0 40.0 37.0 40.0 28-29 38.95725964730548 40.0 40.0 40.0 37.0 40.0 30-31 38.89203980350272 40.0 40.0 40.0 37.0 40.0 32-33 38.77267779110498 40.0 38.5 40.0 37.0 40.0 34-35 38.790079387766525 40.0 37.0 40.0 37.0 40.0 36-37 38.555036554357315 40.0 37.0 40.0 37.0 40.0 38-39 38.697853462453374 40.0 37.0 40.0 37.0 40.0 40-41 38.71090936903062 40.0 37.0 40.0 37.0 40.0 42-43 38.65767411636098 40.0 37.0 40.0 37.0 40.0 44-45 38.576677461990386 40.0 37.0 40.0 37.0 40.0 46-47 38.50494582109422 40.0 37.0 40.0 37.0 40.0 48-49 38.45719780209068 40.0 37.0 40.0 37.0 40.0 50-51 38.39340388087298 40.0 37.0 40.0 37.0 40.0 52-53 38.33960765854722 40.0 37.0 40.0 37.0 40.0 54-55 38.24690519025741 40.0 37.0 40.0 37.0 40.0 56-57 38.120493062681874 40.0 37.0 40.0 37.0 40.0 58-59 37.99729984952539 40.0 37.0 40.0 37.0 40.0 60-61 37.833352431981396 40.0 37.0 40.0 33.0 40.0 62-63 37.64137809799311 38.5 37.0 40.0 33.0 40.0 64-65 37.42838152134388 37.0 37.0 40.0 33.0 40.0 66-67 37.18524999862498 37.0 37.0 40.0 33.0 40.0 68-69 36.9308441655125 37.0 37.0 40.0 33.0 40.0 70-71 36.678905852183064 37.0 37.0 40.0 33.0 40.0 72-73 36.42098197246022 37.0 37.0 37.0 33.0 40.0 74-75 35.97072901759287 37.0 35.0 37.0 33.0 40.0 76-77 34.7142352658421 37.0 33.0 37.0 30.0 37.0 78-79 35.822989992379995 37.0 37.0 37.0 33.0 37.0 80-81 35.91338269948264 37.0 37.0 37.0 33.0 37.0 82-83 35.828765689756935 37.0 37.0 37.0 33.0 37.0 84-85 35.71924813449637 37.0 37.0 37.0 33.0 37.0 86-87 35.64063328467298 37.0 37.0 37.0 33.0 37.0 88-89 35.567945390315955 37.0 37.0 37.0 33.0 37.0 90-91 35.49771509918959 37.0 35.0 37.0 33.0 37.0 92-93 35.4362075803013 37.0 33.0 37.0 33.0 37.0 94-95 35.39122801300867 37.0 33.0 37.0 33.0 37.0 96-97 35.349199835275996 37.0 33.0 37.0 33.0 37.0 98-99 35.2972619232937 37.0 33.0 37.0 33.0 37.0 100 35.195150062873715 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 0.0 13 0.0 14 0.0 15 1.0 16 0.0 17 1.0 18 6.0 19 4.0 20 24.0 21 88.0 22 360.0 23 1006.0 24 2483.0 25 5051.0 26 9155.0 27 15357.0 28 23095.0 29 32749.0 30 44733.0 31 61015.0 32 81423.0 33 111929.0 34 162616.0 35 252049.0 36 506069.0 37 1647152.0 38 2806590.0 39 143380.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.74151367246362 0.0 24.49796184564206 29.760524481894322 2 14.977034676216702 23.837782596740833 38.50860166845685 22.67658105858562 3 16.71392840912708 24.186842926891376 33.002145572487905 26.097083091493634 4 13.068153916544716 23.37699217304046 36.84965132420939 26.705202586205434 5 17.513403049791705 35.782354619343224 32.20197737841172 14.502264952453354 6 28.129414220692112 37.12551451093969 20.050870785056794 14.694200483311398 7 26.241712926302714 32.76360627576788 22.14899014397587 18.845690653953543 8 24.21439887361659 32.11137461340252 21.828690100141593 21.845536412839294 9 23.822887180328518 20.481002015293065 23.503941613897073 32.19216919048134 10-11 24.6511755086105 26.022939429294333 28.265242907744682 21.06064215435049 12-13 25.116049084229363 24.100538116941177 28.25184204694043 22.531570751889028 14-15 22.5716378865615 26.36008578582631 26.38861446612342 24.679661861488768 16-17 21.677955531317934 28.872576088409456 27.257463234612523 22.19200514566009 18-19 21.70221098156285 27.682204331077674 29.272420329625675 21.343164357733794 20-21 22.471241320628323 26.94914905564491 29.215972067193757 21.363637556533007 22-23 22.312712035671986 26.795458657430615 29.029859888715958 21.86196941818144 24-25 22.050096339113683 27.072188697622224 29.279527409007176 21.598187554256917 26-27 22.040936343677046 27.347118922319506 29.06731976937071 21.54462496463274 28-29 21.767359967585666 27.050867461788364 29.328396866546573 21.853375704079397 30-31 22.169511158933325 27.12211663685091 29.135391264359228 21.57298093985654 32-33 21.94490084184586 27.256104796688245 29.009719953231254 21.789274408234633 34-35 21.955643469522666 27.18423627071953 29.19590783905604 21.664212420701762 36-37 22.137515809148 27.213599621325262 28.970997292379753 21.677887277146983 38-39 21.83902278693275 27.320841014912585 29.081643586714357 21.75849261144031 40-41 22.149475281863612 27.022209209573344 28.83137044142949 21.996945067133552 42-43 22.140207382207027 27.089773542255063 28.775052438122145 21.994966637415768 44-45 22.094634616200775 27.50296840864564 28.44326396399792 21.959133011155664 46-47 22.338953259948642 27.17170160747128 28.01536034620302 22.473984786377056 48-49 22.17376298567215 27.385825525625133 28.111097009032708 22.329314479670003 50-51 22.182114231846537 27.743796993329035 27.788928631031045 22.285160143793384 52-53 22.38421716193212 27.568879976007537 27.8331713575737 22.21373150448664 54-55 22.2063572975857 27.63766167565208 27.867633936946838 22.28834708981538 56-57 22.39537128354542 28.06084153968356 27.33372251044518 22.210064666325838 58-59 22.282993301107673 27.88153812077364 27.747355528959357 22.088113049159336 60-61 22.43440158227943 28.126417846765882 27.451729359906974 21.987451211047713 62-63 22.202920570000792 28.355307214297543 27.376601331810846 22.06517088389082 64-65 22.32195393588091 28.03590035727105 27.328299833077185 22.31384587377086 66-67 22.309026863825114 27.981909122337235 27.355632935852668 22.353431077984986 68-69 22.396398035505054 27.904907684432988 27.437131749925527 22.261562530136427 70-71 22.456956842374673 27.455751063347307 27.52763461239206 22.559657481885967 72-73 22.41252921725306 27.574056650396688 27.481808388118477 22.531605744231776 74-75 22.304818505143153 27.775410829871777 27.474898174703625 22.44487249028144 76-77 22.551141681030472 27.512684529504227 27.33254614509019 22.60362764437511 78-79 22.3693313803978 27.632655400207582 27.46015789849482 22.537855320899798 80-81 22.45999387921128 27.703221995973315 27.32729994515633 22.509484179659072 82-83 22.587683451636465 27.503303330146426 27.426063277459832 22.482949940757273 84-85 22.591117716833395 27.513966304081546 27.479702978215425 22.41521300086963 86-87 22.45421562724365 27.598763034084584 27.47293007762657 22.474091261045192 88-89 22.59542694757821 27.408133549018153 27.40073330119041 22.595706202213222 90-91 22.5843423666878 27.471242074015155 27.46276668280251 22.481648876494535 92-93 22.552454954442243 27.476011425262197 27.516503297030315 22.45503032326524 94-95 22.545485828114305 27.3886453305555 27.521720225355907 22.54414861597429 96-97 22.609933960237644 27.65200637549884 27.625251968652808 22.112807695610705 98-99 23.652929593548347 29.759548003299592 27.149150169671326 19.43837223348074 100 22.79951625734596 29.97655067108066 21.504093207072653 25.71983986450073 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1032.0 1 976.0 2 1505.5 3 2223.5 4 3155.5 5 5271.0 6 6933.5 7 8178.5 8 9238.5 9 9434.0 10 8933.0 11 8259.0 12 8926.0 13 11487.0 14 18113.5 15 28149.0 16 37114.5 17 42758.5 18 43856.5 19 40914.0 20 36058.5 21 30997.0 22 27670.5 23 27675.0 24 30791.0 25 36982.0 26 45586.5 27 55366.0 28 65988.0 29 78303.0 30 91195.0 31 104053.0 32 117173.5 33 130285.0 34 144049.5 35 156007.5 36 168376.5 37 181454.0 38 192031.5 39 201044.5 40 209749.5 41 217546.5 42 222332.5 43 227079.0 44 233235.5 45 240897.5 46 249446.5 47 255272.5 48 254675.0 49 249023.0 50 243127.0 51 234695.5 52 221767.0 53 208625.5 54 196652.5 55 183879.0 56 170161.5 57 154609.5 58 138157.5 59 120899.5 60 101896.5 61 83855.5 62 67612.5 63 52518.0 64 39693.5 65 29586.0 66 21975.0 67 16615.0 68 12595.0 69 9072.0 70 6347.0 71 4598.0 72 3255.0 73 2221.0 74 1542.0 75 1052.5 76 701.5 77 416.5 78 244.5 79 175.0 80 126.0 81 87.5 82 61.5 83 40.5 84 23.5 85 16.0 86 13.0 87 10.5 88 9.0 89 7.0 90 6.5 91 5.0 92 3.0 93 2.5 94 1.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 2.2010257795990984E-4 2 6.941696689504849E-4 3 0.0037417438253184677 4 0.014408253372606405 5 5.417909611320857E-4 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 8.465483767688839E-6 18-19 1.6930967535377678E-5 20-21 5.079428290028244E-5 22-23 4.995150470864896E-4 24-25 0.012634707405750756 26-27 0.055810539652676815 28-29 0.0858317149119 30-31 0.07178649157970507 32-33 0.032458774719946334 34-35 0.0034024003550775705 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 9.085299331540017E-6 54-55 2.5624604305775475E-4 56-57 5.997240531233721E-4 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 3.904313094675688E-5 70-71 0.0010742010801929542 72-73 0.014525723206528044 74-75 0.024281095046295553 76-77 0.0029349175951042337 78-79 6.12888242995479E-5 80-81 7.117145533661108E-4 82-83 0.015458122394371493 84-85 0.048793001659424844 86-87 0.037537035018345655 88-89 0.008817224625509596 90-91 9.779287989600054E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 97.0 20-21 347.0 22-23 856.0 24-25 2305.0 26-27 2887.0 28-29 5535.0 30-31 11165.0 32-33 14892.0 34-35 21211.0 36-37 29023.0 38-39 33577.0 40-41 36400.0 42-43 44742.0 44-45 53344.0 46-47 52039.0 48-49 44968.0 50-51 39975.0 52-53 38980.0 54-55 42920.0 56-57 46648.0 58-59 47152.0 60-61 47793.0 62-63 47905.0 64-65 50807.0 66-67 55126.0 68-69 50490.0 70-71 45315.0 72-73 43366.0 74-75 44873.0 76-77 45069.0 78-79 47061.0 80-81 47695.0 82-83 46370.0 84-85 47298.0 86-87 49405.0 88-89 53197.0 90-91 54940.0 92-93 57512.0 94-95 75373.0 96-97 273746.0 98-99 1036573.0 100-101 3117360.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.43483800956722 #Duplication Level Percentage of deduplicated Percentage of total 1 90.52259437826142 78.24305781290785 2 6.813904081631588 11.779173910171101 3 1.5529828461719146 4.026954622215182 4 0.5288463364075202 1.8284298967734838 5 0.22303602362328734 0.9639041286088423 6 0.11465943791109884 0.5946341965268314 7 0.06998085117608353 0.4234148474623488 8 0.04161649313251069 0.28776918739478624 9 0.02771574817978846 0.2156045583810576 >10 0.10191565895097367 1.3832232495269807 >50 0.0021017156531473466 0.12068273465726156 >100 6.160998181400394E-4 0.1152460831876074 >500 3.0329082573074806E-5 0.017904772186616538 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 6.772387014151071E-5 0.0 0.0 0.0 3 0.0 6.772387014151071E-5 0.0 0.0 0.0 4 0.0 6.772387014151071E-5 0.0 0.0 0.0 5 0.0 6.772387014151071E-5 0.0 1.6930967535377678E-5 0.0 6 0.0 6.772387014151071E-5 0.0 1.6930967535377678E-5 0.0 7 0.0 1.0158580521226608E-4 0.0 1.6930967535377678E-5 0.0 8 0.0 1.1851677274764376E-4 0.0 1.6930967535377678E-5 0.0 9 0.0 2.0317161042453217E-4 0.0 1.6930967535377678E-5 0.0 10-11 0.0 2.0317161042453217E-4 0.0 1.6930967535377678E-5 0.0 12-13 0.0 2.11637094192221E-4 0.0 4.2327418838444196E-5 0.0 14-15 0.0 3.047574156367982E-4 0.0 8.46548376768884E-5 1.6930967535377678E-5 16-17 0.0 3.555503182429313E-4 0.0 1.0158580521226608E-4 1.6930967535377678E-5 18-19 0.0 3.555503182429313E-4 0.0 1.1005128897995492E-4 3.3861935070755357E-5 20-21 0.0 3.555503182429313E-4 0.0 1.1851677274764376E-4 3.3861935070755357E-5 22-23 0.0 4.0634322084906433E-4 0.0 1.5237870781839913E-4 4.2327418838444196E-5 24-25 0.0 4.5713612345519737E-4 0.0 2.0317161042453217E-4 5.079290260613304E-5 26-27 0.0 4.7406709099057505E-4 0.0 2.539645130306652E-4 5.079290260613304E-5 28-29 0.0 4.7406709099057505E-4 0.0 4.5713612345519737E-4 5.079290260613304E-5 30-31 0.0 5.587219286674634E-4 0.0 0.0011343748248703045 5.9258386373821874E-5 32-33 0.0 5.587219286674634E-4 0.0 0.002167163844528343 6.772387014151071E-5 34-35 0.0 6.518422501120407E-4 0.0 0.0037671402766215334 6.772387014151071E-5 36-37 0.0 7.44962571556618E-4 0.0 0.0065099570173527185 8.46548376768884E-5 38-39 0.0 7.618935390919956E-4 0.0 0.010090856651085098 8.46548376768884E-5 40-41 0.0 9.312032144457724E-4 0.0 0.013764876606262053 8.46548376768884E-5 42-43 0.0 0.0010412545034257275 0.0 0.017379638175065187 1.0158580521226608E-4 44-45 0.0 0.0011767022437087489 0.0 0.022221894890183204 1.1851677274764376E-4 46-47 0.0 0.0011851677274764376 0.0 0.02720806482935193 1.439132240507103E-4 48-49 0.0 0.0011936332112441263 0.0 0.03209264896330839 1.5237870781839913E-4 50-51 0.0 0.001269822565153326 0.0 0.03677406148684032 1.5237870781839913E-4 52-53 0.0 0.001269822565153326 0.0 0.04139621562399842 1.693096753537768E-4 54-55 0.0 0.0012867535326887038 0.0 0.04645010943330867 1.862406428891545E-4 56-57 0.0 0.0013036845002240814 0.0 0.05224896581417552 1.862406428891545E-4 58-59 0.0 0.0013290809515271477 0.0 0.05750603123391029 1.9470612665684333E-4 60-61 0.0 0.0013883393379009697 0.0 0.06267844181596817 2.0317161042453217E-4 62-63 0.0 0.001430666756739414 0.0 0.06819793723250128 2.0317161042453217E-4 64-65 0.0 0.0015745799807901242 0.0 0.07377669103540824 2.0317161042453217E-4 66-67 0.0 0.0015745799807901242 0.0 0.07899989452007225 2.11637094192221E-4 68-69 0.0 0.0016084419158608797 0.0 0.08469716509572683 2.2010257795990984E-4 70-71 0.0 0.0016592348184670128 0.0 0.08961561116475406 2.2010257795990984E-4 72-73 0.0 0.0017015622373054567 0.0 0.09323037273355719 2.539645130306652E-4 74-75 0.0 0.0017523551399115898 0.0 0.09601551689312682 2.539645130306652E-4 76-77 0.0 0.001786217074982345 0.0 0.0984620417019889 2.539645130306652E-4 78-79 0.0 0.001803148042517723 0.0 0.10012127652045591 2.539645130306652E-4 80-81 0.0 0.0018200790100531008 0.0 0.10069692941665875 2.6242999679835404E-4 82-83 0.0 0.0018285444938207895 0.0 0.10109480715374013 2.7089548056604285E-4 84-85 0.0 0.0018285444938207895 0.0 0.10128951328039697 2.7089548056604285E-4 86-87 0.0 0.0018285444938207895 0.0 0.10138263360184155 2.7089548056604285E-4 88 0.0 0.0019470612665684333 0.0 0.10139956456937693 2.7089548056604285E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9035 0.0 51.815723 1 GTATCAA 16765 0.0 37.73999 1 CTTATAC 4760 0.0 36.89313 1 ATCAACG 19760 0.0 31.373692 3 TCAACGC 20595 0.0 30.080273 4 TATCAAC 21160 0.0 29.64004 2 CAACGCA 21180 0.0 29.226152 5 AACGCAG 21370 0.0 29.006094 6 ACGCAGA 21525 0.0 28.75772 7 TATACAC 7030 0.0 27.822592 3 CGCAGAG 25085 0.0 24.693445 8 TTATACA 7255 0.0 24.439993 2 ACACATC 8080 0.0 22.204311 6 GTGGTAT 4355 0.0 21.968315 1 GCAGAGT 28785 0.0 21.5046 9 GAGTACT 17795 0.0 20.785358 12-13 TGGTATC 4350 0.0 20.62508 2 GTACATG 18635 0.0 20.125263 1 ACATCTC 8645 0.0 20.064642 8 TACACAT 9805 0.0 19.64205 5 >>END_MODULE