##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138771_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6173769 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.838758625403706 33.0 33.0 33.0 33.0 33.0 2 32.83537576478809 33.0 33.0 33.0 33.0 33.0 3 32.83400383137108 33.0 33.0 33.0 33.0 33.0 4 36.78920866653741 37.0 37.0 37.0 37.0 37.0 5 36.8006023548986 37.0 37.0 37.0 37.0 37.0 6 36.81120333462428 37.0 37.0 37.0 37.0 37.0 7 36.8000971529709 37.0 37.0 37.0 37.0 37.0 8 36.79482679057153 37.0 37.0 37.0 37.0 37.0 9 36.78985154773365 37.0 37.0 37.0 37.0 37.0 10-11 36.769196984856414 37.0 37.0 37.0 37.0 37.0 12-13 36.75635320984637 37.0 37.0 37.0 37.0 37.0 14-15 39.108112807589656 40.0 40.0 40.0 37.0 40.0 16-17 39.06705118056733 40.0 40.0 40.0 37.0 40.0 18-19 39.09740808248576 40.0 40.0 40.0 37.0 40.0 20-21 39.13669787013477 40.0 40.0 40.0 37.0 40.0 22-23 39.15565035330832 40.0 40.0 40.0 37.0 40.0 24-25 39.067516933523336 40.0 40.0 40.0 37.0 40.0 26-27 38.99052608238826 40.0 40.0 40.0 37.0 40.0 28-29 38.963346497153196 40.0 40.0 40.0 37.0 40.0 30-31 38.91731307091757 40.0 40.0 40.0 37.0 40.0 32-33 38.76354609750156 40.0 38.5 40.0 37.0 40.0 34-35 38.83294365329688 40.0 37.0 40.0 37.0 40.0 36-37 38.52471066025313 40.0 37.0 40.0 37.0 40.0 38-39 38.69880547570719 40.0 37.0 40.0 37.0 40.0 40-41 38.7051043590911 40.0 37.0 40.0 37.0 40.0 42-43 38.652665436546826 40.0 37.0 40.0 37.0 40.0 44-45 38.5683276634798 40.0 37.0 40.0 37.0 40.0 46-47 38.486973671930144 40.0 37.0 40.0 37.0 40.0 48-49 38.43655167027363 40.0 37.0 40.0 37.0 40.0 50-51 38.37563997361177 40.0 37.0 40.0 37.0 40.0 52-53 38.32079302180261 40.0 37.0 40.0 37.0 40.0 54-55 38.2336572242983 40.0 37.0 40.0 37.0 40.0 56-57 38.113072839445834 40.0 37.0 40.0 37.0 40.0 58-59 37.98508813638033 40.0 37.0 40.0 37.0 40.0 60-61 37.82347004806504 40.0 37.0 40.0 33.0 40.0 62-63 37.63247855555899 38.5 37.0 40.0 33.0 40.0 64-65 37.413151872241045 37.0 37.0 40.0 33.0 40.0 66-67 37.171659800796306 37.0 37.0 40.0 33.0 40.0 68-69 36.91492569615065 37.0 37.0 40.0 33.0 40.0 70-71 36.660716929920824 37.0 37.0 40.0 33.0 40.0 72-73 36.40840798528518 37.0 37.0 37.0 33.0 40.0 74-75 36.1598231079962 37.0 37.0 37.0 33.0 40.0 76-77 34.482908395006376 35.0 33.0 37.0 30.0 37.0 78-79 35.771219869413926 37.0 35.0 37.0 33.0 37.0 80-81 35.88965350852249 37.0 37.0 37.0 33.0 37.0 82-83 35.81470659157062 37.0 37.0 37.0 33.0 37.0 84-85 35.704640368200806 37.0 37.0 37.0 33.0 37.0 86-87 35.62253109122959 37.0 37.0 37.0 33.0 37.0 88-89 35.54664301976783 37.0 37.0 37.0 33.0 37.0 90-91 35.47649264834449 37.0 33.0 37.0 33.0 37.0 92-93 35.412675549749245 37.0 33.0 37.0 33.0 37.0 94-95 35.3654200169741 37.0 33.0 37.0 33.0 37.0 96-97 35.32339986927058 37.0 33.0 37.0 33.0 37.0 98-99 35.27887977292912 37.0 33.0 37.0 33.0 37.0 100 35.188895982976774 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 2.0 20 22.0 21 78.0 22 312.0 23 1079.0 24 2541.0 25 5355.0 26 9632.0 27 16153.0 28 24178.0 29 34631.0 30 47600.0 31 64990.0 32 87019.0 33 119761.0 34 173063.0 35 270880.0 36 549302.0 37 1772088.0 38 2879772.0 39 115310.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.18998151696314 19.82510197579469 14.459449325039534 23.52546718220264 2 14.762586679223016 20.68323256020755 41.63195934282607 22.92222141774336 3 18.347794353585346 25.780019608913456 30.34520661195846 25.52697942554274 4 12.593496352489977 18.03191443689473 38.25755151786931 31.117037692745985 5 13.600688984476792 37.400457163293986 35.07385493747372 13.924998914755502 6 30.131140313153924 37.308733125583416 18.615403329797406 13.944723231465254 7 26.681076016935524 32.73873706645001 22.36564082653562 18.214546090078848 8 24.695659976911998 36.16095775530312 20.866297394670905 18.277084873113978 9 25.620718883391973 16.978947544036714 20.931816528930707 36.4685170436406 10-11 24.307266760385755 26.679318581566626 28.379965301584818 20.6334493564628 12-13 25.351312949998615 24.279730906679532 28.522843987198094 21.846112156123755 14-15 22.444458158379426 25.644318729774305 26.419347727457893 25.49187538438837 16-17 21.83976271221032 28.84122324628602 27.043164394391823 22.275849647111837 18-19 21.811174017038862 27.686474825993653 29.090892451596424 21.41145870537106 20-21 22.582361615146713 26.716419566500722 29.119587161131022 21.581631657221543 22-23 22.3294506213492 26.79843151535435 28.99119333112973 21.880924532166723 24-25 22.21332734664367 26.96453040309612 29.01252756941075 21.80961468084946 26-27 22.040558324594866 27.092012510095554 29.013867142383056 21.853562022926525 28-29 21.8405886567545 27.026230211417158 29.207351408972986 21.925829722855358 30-31 22.187743708923584 26.878034520047805 28.90972978825769 22.024491982770925 32-33 22.07113458312077 27.046966156066937 29.000705076854356 21.881194183957945 34-35 22.16775132832936 27.2652045463329 28.902984136364545 21.664059988973193 36-37 22.14600532770823 27.20222974516251 28.668450207467348 21.9833147196619 38-39 21.971516179569686 27.16645874646284 28.8854339250923 21.976591148875173 40-41 22.198197285926774 27.034795867876415 28.80012402956093 21.96688281663588 42-43 22.187967629243115 27.129812483301375 28.59255613132838 22.08966375612713 44-45 22.19601841451184 27.320843635030478 28.338679430489368 22.144458519968317 46-47 22.432333153903876 27.29976799551206 27.883125515393743 22.38477333519032 48-49 22.285394838490333 27.472245153205797 27.839517890112862 22.402842118191003 50-51 22.294720064574545 27.61926063971484 27.762799821923913 22.3232194737867 52-53 22.414390933586255 27.56253922307012 27.76565791897524 22.25741192436838 54-55 22.339817061044894 27.560213934455653 27.641383892767617 22.458585111731836 56-57 22.49298598393771 27.729102888048672 27.441562774794658 22.336348353218956 58-59 22.33027843357665 27.80953199001983 27.638380463596313 22.221809112807207 60-61 22.52263867964016 27.895642053050825 27.43041345083752 22.1513058164715 62-63 22.35252586553683 28.016334827516925 27.38607846227587 22.245060844670373 64-65 22.352525847158063 27.95990562818853 27.350137436001955 22.337431088651453 66-67 22.447046492250312 27.830974578201534 27.27013802042385 22.451840909124307 68-69 22.429339639622683 27.737339252728454 27.382921142295004 22.450399965353864 70-71 22.45881432109838 27.560163788195318 27.441475740773253 22.539546149933052 72-73 22.50043583947402 27.571691228002614 27.349245556443126 22.57862737608024 74-75 22.377707643981967 27.723401717750257 27.317317585052507 22.58157305321527 76-77 22.511148273355232 27.67988752156357 27.241998987502132 22.566965217579074 78-79 22.48555995505885 27.678167782741337 27.20589075227247 22.630381509927343 80-81 22.476972693590504 27.70421473040175 27.239945773729808 22.578866802277943 82-83 22.51265283593081 27.682395792327284 27.254767370394923 22.550184001346977 84-85 22.609130323084305 27.646043148274646 27.237970720671385 22.506855807969664 86-87 22.494526637699845 27.671983168625786 27.322602511540918 22.510887682133447 88-89 22.503124829400246 27.641584350911184 27.279826620928517 22.575464198760052 90-91 22.569452207220834 27.66571462267779 27.250985801383454 22.513847368717922 92-93 22.591493537896017 27.62677923186943 27.28063749981462 22.50108973041993 94-95 22.5030656068201 27.664684650300387 27.28965297603715 22.54259676684236 96-97 22.564547288261583 27.80147901258061 27.32211499802819 22.31185870112962 98-99 23.656554973762738 29.728074570901008 27.53899327759255 19.076377177743705 100 22.579473280916684 30.64720993396044 21.417452004784394 25.35586478033848 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1897.0 1 1619.5 2 1891.0 3 2614.5 4 3517.5 5 5434.5 6 7051.0 7 8496.5 8 9873.0 9 10380.0 10 9970.0 11 9311.5 12 10020.0 13 12918.0 14 19825.0 15 29259.5 16 37104.5 17 41882.0 18 42949.0 19 40473.0 20 36178.5 21 31545.5 22 28064.0 23 27769.0 24 30997.0 25 37369.5 26 46117.5 27 56222.0 28 67635.0 29 80581.0 30 93611.0 31 107042.5 32 120982.0 33 134127.0 34 147267.5 35 159777.0 36 173046.0 37 186175.5 38 196947.5 39 206012.0 40 215157.0 41 223283.0 42 228132.5 43 233369.0 44 239062.0 45 244368.5 46 249428.0 47 253388.0 48 258645.5 49 257971.0 50 251698.0 51 245660.5 52 236442.0 53 224240.5 54 212363.0 55 199517.0 56 184067.0 57 167232.5 58 149619.5 59 131020.5 60 110739.5 61 91351.5 62 73481.0 63 57122.0 64 42969.0 65 32007.0 66 23772.5 67 17841.5 68 13596.5 69 9841.0 70 6952.5 71 4890.5 72 3432.0 73 2430.5 74 1630.0 75 1032.5 76 638.5 77 404.0 78 257.5 79 168.0 80 110.5 81 62.5 82 40.0 83 33.5 84 27.0 85 20.5 86 15.5 87 11.0 88 7.5 89 4.5 90 2.0 91 1.0 92 1.0 93 1.0 94 1.5 95 1.5 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 7.450878061683228E-4 4 0.01946946832639835 5 7.288902451646636E-4 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 8.09894448076371E-6 22-23 0.0 24-25 0.007299188469582961 26-27 0.049669647007567874 28-29 0.08476340154054685 30-31 0.0753956587879326 32-33 0.03463577059425516 34-35 0.004280410420426804 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 2.9694107894239716E-4 56-57 7.305067358001813E-4 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 3.743215422047539E-5 72-73 0.011929298896039652 74-75 0.027262823899476398 76-77 0.004040231105057909 78-79 0.0 80-81 0.0 82-83 0.010128936329525958 84-85 0.04612223846331928 86-87 0.03768252567555295 88-89 0.00992297418119229 90-91 1.6408630693615382E-4 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 67.0 20-21 328.0 22-23 783.0 24-25 2246.0 26-27 2759.0 28-29 4896.0 30-31 11097.0 32-33 14505.0 34-35 20551.0 36-37 29137.0 38-39 34613.0 40-41 37011.0 42-43 45235.0 44-45 54754.0 46-47 53437.0 48-49 46403.0 50-51 41185.0 52-53 39363.0 54-55 42758.0 56-57 46134.0 58-59 46687.0 60-61 46205.0 62-63 46461.0 64-65 49394.0 66-67 53369.0 68-69 49724.0 70-71 45876.0 72-73 43477.0 74-75 44293.0 76-77 44330.0 78-79 47525.0 80-81 47824.0 82-83 46188.0 84-85 46179.0 86-87 48359.0 88-89 51478.0 90-91 54294.0 92-93 55862.0 94-95 67554.0 96-97 197816.0 98-99 381846.0 100-101 4131766.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.63154891056615 #Duplication Level Percentage of deduplicated Percentage of total 1 91.37926850772234 80.07706837646228 2 6.286619258236362 11.018123660204935 3 1.352058317446659 3.5544889372579407 4 0.4662917169995036 1.6344746161933548 5 0.20426310120360386 0.8949945971873766 6 0.10049175698577893 0.5283748990444809 7 0.0525542341016917 0.3223786255297818 8 0.03976134097793398 0.27874783173260154 9 0.023153434539395133 0.18260741981579365 >10 0.09293509769302583 1.290253648241173 >50 0.001965493907302812 0.11132415217077928 >100 5.821319221902993E-4 0.07826611958182443 >500 5.560826423846181E-5 0.028897116577716028 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.619756100365919E-5 2 0.0 4.8592683010977574E-5 0.0 0.0 3.239512200731838E-5 3 0.0 4.8592683010977574E-5 0.0 0.0 3.239512200731838E-5 4 0.0 8.098780501829595E-5 0.0 1.619756100365919E-5 4.8592683010977574E-5 5 0.0 8.098780501829595E-5 0.0 1.619756100365919E-5 4.8592683010977574E-5 6 4.8592683010977574E-5 8.098780501829595E-5 0.0 1.619756100365919E-5 4.8592683010977574E-5 7 4.8592683010977574E-5 8.098780501829595E-5 0.0 1.619756100365919E-5 6.479024401463677E-5 8 4.8592683010977574E-5 9.718536602195515E-5 0.0 1.619756100365919E-5 9.718536602195515E-5 9 4.8592683010977574E-5 1.943707320439103E-4 0.0 1.619756100365919E-5 9.718536602195515E-5 10-11 6.479024401463677E-5 1.943707320439103E-4 0.0 2.4296341505488787E-5 9.718536602195515E-5 12-13 7.288902451646636E-5 1.943707320439103E-4 0.0 3.239512200731838E-5 9.718536602195515E-5 14-15 9.718536602195515E-5 2.5106219555671744E-4 0.0 3.239512200731838E-5 1.3767926853110312E-4 16-17 1.1338292702561433E-4 2.5916097605854706E-4 0.0 3.239512200731838E-5 1.538768295347623E-4 18-19 1.1338292702561433E-4 2.9155609806586543E-4 0.0 3.239512200731838E-5 1.862719515420807E-4 20-21 1.2958048802927353E-4 3.077536590695246E-4 0.0 3.239512200731838E-5 2.2676585405122867E-4 22-23 1.619756100365919E-4 3.644451225823318E-4 0.0 5.669146351280717E-5 2.2676585405122867E-4 24-25 1.619756100365919E-4 4.130378055933094E-4 0.0 6.479024401463677E-5 2.2676585405122867E-4 26-27 1.619756100365919E-4 4.3733414709879815E-4 0.0 8.098780501829595E-5 2.2676585405122867E-4 28-29 1.619756100365919E-4 4.4543292760062777E-4 0.0 3.0775365906952467E-4 2.2676585405122867E-4 30-31 1.619756100365919E-4 4.8592683010977575E-4 0.0 8.422731721902779E-4 2.2676585405122867E-4 32-33 1.862719515420807E-4 4.8592683010977575E-4 0.0 0.0021704731744903315 2.2676585405122867E-4 34-35 2.024695125457399E-4 5.912109766335605E-4 0.0 0.003676846347830636 2.2676585405122867E-4 36-37 2.1056829304756948E-4 7.126926841610043E-4 0.0 0.006227962205906959 2.3486463455305826E-4 38-39 2.1056829304756948E-4 7.450878061683228E-4 0.0 0.010253056115316267 2.4296341505488788E-4 40-41 2.1056829304756948E-4 8.017792696811299E-4 0.0 0.014043285390172518 2.4296341505488788E-4 42-43 2.1056829304756948E-4 8.179768306847892E-4 0.0 0.017671539054992177 2.5106219555671744E-4 44-45 2.1056829304756948E-4 8.503719526921075E-4 0.0 0.02219065857501309 2.9155609806586543E-4 46-47 2.1056829304756948E-4 8.746682941975963E-4 0.0 0.026928445168583406 3.077536590695246E-4 48-49 2.1866707354939907E-4 8.746682941975963E-4 0.0 0.03165813298165189 3.239512200731838E-4 50-51 2.5106219555671744E-4 9.39458538212233E-4 0.0 0.036695574453789896 3.320500005750134E-4 52-53 2.5916097605854706E-4 9.556560992158923E-4 0.0 0.04123089153481447 3.482475615786726E-4 54-55 2.672597565603767E-4 9.880512212232105E-4 0.0 0.04620354276293784 3.8064268358599103E-4 56-57 2.7535853706220625E-4 0.0010285451237323586 0.0 0.05137866350360695 4.049390250914798E-4 58-59 2.7535853706220625E-4 0.0010528414652378475 0.0 0.056902031805854736 4.049390250914798E-4 60-61 2.834573175640358E-4 0.0010852365872451657 0.0 0.06221483181505495 4.049390250914798E-4 62-63 3.239512200731838E-4 0.0011419280507579729 0.0 0.06717128548217466 4.2113658609513896E-4 64-65 3.40148781076843E-4 0.0012310146362780985 0.0 0.0722978135398328 4.2113658609513896E-4 66-67 3.482475615786726E-4 0.0012310146362780985 0.0 0.0776025147685312 4.4543292760062777E-4 68-69 3.725439030841614E-4 0.0012310146362780985 0.0 0.0827776355092003 4.940256106116053E-4 70-71 3.8064268358599103E-4 0.0012310146362780985 0.0 0.08717527332169377 5.183219521170941E-4 72-73 4.049390250914798E-4 0.0012310146362780985 0.0 0.09050387210794572 5.993097571353901E-4 74-75 4.049390250914798E-4 0.001239113416779928 0.0 0.09337893918609524 5.993097571353901E-4 76-77 4.2113658609513896E-4 0.001279607319289076 0.0 0.09627830260575024 5.993097571353901E-4 78-79 4.2113658609513896E-4 0.0012958048802927352 0.0 0.09780897212059603 5.993097571353901E-4 80-81 4.2113658609513896E-4 0.0013039036607945648 0.0 0.09828680017020397 6.479024401463676E-4 82-83 4.2113658609513896E-4 0.0013120024412963944 0.0 0.09871603553680094 6.80297562153686E-4 84-85 4.2113658609513896E-4 0.0013120024412963944 0.0 0.0989266038298485 6.80297562153686E-4 86-87 4.2113658609513896E-4 0.0013282000023000537 0.0 0.09899139407386315 6.80297562153686E-4 88 4.2113658609513896E-4 0.0013767926853110312 0.0 0.09899949285436498 6.964951231573452E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9960 0.0 50.82614 1 GTATCAA 18185 0.0 38.624207 1 TCAACGC 22145 0.0 31.136923 4 ATCAACG 22230 0.0 30.979586 3 TATCAAC 22950 0.0 30.399569 2 CTTATAC 4425 0.0 30.391027 1 CAACGCA 22820 0.0 30.266579 5 AACGCAG 23345 0.0 29.67739 6 ACGCAGA 26670 0.0 25.945343 7 CGCAGAG 26975 0.0 25.620237 8 GTGGTAT 4630 0.0 24.327854 1 TATACAC 6710 0.0 23.6161 3 TGGTATC 4630 0.0 22.847832 2 GCAGAGT 30475 0.0 22.734001 9 TTATACA 6825 0.0 21.774883 2 GTACATG 19920 0.0 21.13456 1 GAGTACT 18930 0.0 20.991257 12-13 TACATGG 19875 0.0 20.751436 2 CAGAGTA 29740 0.0 19.90514 10-11 ACATGGG 20245 0.0 19.864462 3 >>END_MODULE