##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138770_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4941006 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.8340119400786 33.0 33.0 33.0 33.0 33.0 2 32.833623152855914 33.0 33.0 33.0 33.0 33.0 3 32.833784051264054 33.0 33.0 33.0 33.0 33.0 4 36.78634533129488 37.0 37.0 37.0 37.0 37.0 5 36.79516985002649 37.0 37.0 37.0 37.0 37.0 6 36.80848009494423 37.0 37.0 37.0 37.0 37.0 7 36.798568348227064 37.0 37.0 37.0 37.0 37.0 8 36.777549349262074 37.0 37.0 37.0 37.0 37.0 9 36.773688799406436 37.0 37.0 37.0 37.0 37.0 10-11 36.766144283168245 37.0 37.0 37.0 37.0 37.0 12-13 36.75246285877815 37.0 37.0 37.0 37.0 37.0 14-15 39.10548266891398 40.0 40.0 40.0 37.0 40.0 16-17 39.0691844940079 40.0 40.0 40.0 37.0 40.0 18-19 39.09905290542048 40.0 40.0 40.0 37.0 40.0 20-21 39.130622224862904 40.0 40.0 40.0 37.0 40.0 22-23 39.1575326177238 40.0 40.0 40.0 37.0 40.0 24-25 39.066507565835565 40.0 40.0 40.0 37.0 40.0 26-27 38.98099861146878 40.0 40.0 40.0 37.0 40.0 28-29 38.956929429659894 40.0 40.0 40.0 37.0 40.0 30-31 38.895732569545345 40.0 40.0 40.0 37.0 40.0 32-33 38.74858149987065 40.0 38.5 40.0 37.0 40.0 34-35 38.8268103319793 40.0 38.5 40.0 37.0 40.0 36-37 38.52119621686445 40.0 37.0 40.0 37.0 40.0 38-39 38.69675089797635 40.0 37.0 40.0 37.0 40.0 40-41 38.71073165653942 40.0 37.0 40.0 37.0 40.0 42-43 38.66276960731912 40.0 37.0 40.0 37.0 40.0 44-45 38.58197340557351 40.0 37.0 40.0 37.0 40.0 46-47 38.50323376714602 40.0 37.0 40.0 37.0 40.0 48-49 38.45531058144559 40.0 37.0 40.0 37.0 40.0 50-51 38.39169743188977 40.0 37.0 40.0 37.0 40.0 52-53 38.33097954397524 40.0 37.0 40.0 37.0 40.0 54-55 38.24881055542587 40.0 37.0 40.0 37.0 40.0 56-57 38.12754172664951 40.0 37.0 40.0 37.0 40.0 58-59 37.99734261081822 40.0 37.0 40.0 37.0 40.0 60-61 37.83716124650512 40.0 37.0 40.0 33.0 40.0 62-63 37.64669782431979 38.5 37.0 40.0 33.0 40.0 64-65 37.424268928905434 37.0 37.0 40.0 33.0 40.0 66-67 37.188170995088576 37.0 37.0 40.0 33.0 40.0 68-69 36.93465093626805 37.0 37.0 40.0 33.0 40.0 70-71 36.68197326005964 37.0 37.0 40.0 33.0 40.0 72-73 36.43391042250435 37.0 37.0 37.0 33.0 40.0 74-75 36.187634910500385 37.0 37.0 37.0 33.0 40.0 76-77 34.527470971586155 35.0 33.0 37.0 30.0 37.0 78-79 35.79575700793568 37.0 37.0 37.0 33.0 37.0 80-81 35.911090956641594 37.0 37.0 37.0 33.0 37.0 82-83 35.8347353803419 37.0 37.0 37.0 33.0 37.0 84-85 35.72502052655156 37.0 37.0 37.0 33.0 37.0 86-87 35.64481750281475 37.0 37.0 37.0 33.0 37.0 88-89 35.57107516564797 37.0 37.0 37.0 33.0 37.0 90-91 35.5051174479874 37.0 35.0 37.0 33.0 37.0 92-93 35.443100258901744 37.0 33.0 37.0 33.0 37.0 94-95 35.39849206958485 37.0 33.0 37.0 33.0 37.0 96-97 35.357711939768606 37.0 33.0 37.0 33.0 37.0 98-99 35.31367294499121 37.0 33.0 37.0 33.0 37.0 100 35.22029925119397 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 4.0 13 1.0 14 0.0 15 0.0 16 1.0 17 0.0 18 1.0 19 6.0 20 18.0 21 79.0 22 290.0 23 871.0 24 2137.0 25 4452.0 26 7992.0 27 12811.0 28 19371.0 29 27635.0 30 38161.0 31 52105.0 32 69396.0 33 95510.0 34 136486.0 35 215123.0 36 432878.0 37 1402567.0 38 2324478.0 39 98633.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.2572447797068 19.761765114229775 14.42582745295189 23.555162653111534 2 14.693525974265158 20.557716384072393 41.53994146131375 23.2088161803487 3 18.286929892610306 25.994150549577544 30.324549173169597 25.39437038464255 4 12.943687506022176 17.9465255190406 38.02682387882292 31.082963096114312 5 13.615097113502589 37.48012283415547 35.01672039767082 13.888059654671117 6 30.10065156771718 37.43130447524249 18.51981155254618 13.948232404494146 7 26.613487212927893 32.8947789174917 22.300175308429093 18.19155856115131 8 24.62696867803844 36.042255362571915 21.096351633655168 18.234424325734473 9 25.523182930763493 16.958631501358227 20.876598814087657 36.64158675379062 10-11 24.28524676958498 26.55846805286211 28.396757664329897 20.759527513223016 12-13 25.430580331211907 24.133759400413602 28.588034501476017 21.84762576689848 14-15 22.41086126995191 25.66024004018615 26.399451852517487 25.52944683734446 16-17 22.052118536184736 28.718979495268776 26.82523558967546 22.403666378871023 18-19 22.049183911130648 27.549349262073353 28.84362010489362 21.557846721902383 20-21 22.687143556983674 26.555856657854882 29.0545413662376 21.702458418923847 22-23 22.379762915099462 26.690743398616316 29.049387391351605 21.880106294932613 24-25 22.255494709903918 26.92370650406216 28.88295785790462 21.9378409281293 26-27 22.302388519109236 27.056256903713887 28.71409043002786 21.92726414714901 28-29 21.943086129265637 27.034032829738507 29.101250799145618 21.921630241850234 30-31 22.625451925738275 26.961127560870228 28.666623564497307 21.74679694889419 32-33 21.924880190203293 27.474106231268365 28.66293781622228 21.938075762306067 34-35 22.160818916362256 27.464641977829796 28.736635049246118 21.63790405656183 36-37 22.153936857132393 27.463701251647105 28.510809456307157 21.871552434913347 38-39 22.027323006457472 27.203917526410148 28.721088883694446 22.047670583437938 40-41 22.29683217914466 26.98687731608272 28.688948217760448 22.027342287012182 42-43 22.318951517164074 27.00913788386628 28.50008821480498 22.171822384164663 44-45 22.272302178467566 27.27068486692491 28.228411366113725 22.2286015884938 46-47 22.57073302539782 27.13640496827014 27.800468677041707 22.492393329290337 48-49 22.42182607624482 27.32471198628917 27.754988868319973 22.498473069146037 50-51 22.34258288912398 27.538369401694002 27.70400758080756 22.415040128374457 52-53 22.515618119306286 27.457885932765226 27.690945685267792 22.335550262660693 54-55 22.4196849624613 27.40052875735437 27.577549432447352 22.60223684773698 56-57 22.569891290419744 27.610498316607107 27.37328742188041 22.446322971092737 58-59 22.397241100345298 27.75037213044344 27.561762045462867 22.290624723748394 60-61 22.60171865570138 27.804683066557374 27.355956745363326 22.237641532377925 62-63 22.43548872064296 27.993318023309904 27.271095668562868 22.300097587484267 64-65 22.513963573207548 27.838610345927982 27.241908876165045 22.405517204699425 66-67 22.53625070294587 27.755388614876203 27.184139804398978 22.524220877778944 68-69 22.55814369771583 27.607046867228995 27.31487618283031 22.51993325222486 70-71 22.558294001323688 27.41678794946839 27.349942137442973 22.674975911764946 72-73 22.618560038601387 27.438607775394857 27.267533449607935 22.675298736395824 74-75 22.49012261297733 27.528609273769263 27.267818113439823 22.713449999813584 76-77 22.64855719741476 27.431740055298086 27.22245517889374 22.697247568393408 78-79 22.60538974531184 27.458710322315323 27.195745734602205 22.740154197770632 80-81 22.637854799000877 27.47177456606151 27.210479600182097 22.67989103475552 82-83 22.67038073348656 27.405128909763164 27.296542420305787 22.62794793644449 84-85 22.72464682537179 27.4044078212643 27.22692140247711 22.6440239508868 86-87 22.640542018268647 27.4106290536984 27.314289792677503 22.63453913535545 88-89 22.67732471018518 27.338664673327816 27.269851724387074 22.71415889209993 90-91 22.74946083791365 27.30023380194484 27.288611458275785 22.661693901865725 92-93 22.768789379783616 27.236914132274272 27.31680286301799 22.67749362492412 94-95 22.66121567438067 27.270252948425117 27.341208265005623 22.727323112188596 96-97 22.73955665459684 27.390063791194237 27.402047568257938 22.468331985950993 98-99 23.874999320063623 29.314152217834856 27.56151880586412 19.2493296562374 100 22.75774263460386 30.28469792568156 21.42406288294019 25.533496556774388 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 891.0 1 802.0 2 1138.0 3 1663.5 4 2332.5 5 3850.0 6 5136.0 7 6281.5 8 7311.0 9 7550.0 10 7162.5 11 6769.5 12 7491.5 13 9718.0 14 14906.5 15 22184.5 16 28426.0 17 32535.0 18 33542.5 19 31533.0 20 28198.0 21 24511.5 22 21933.0 23 21935.5 24 24498.0 25 29439.5 26 36624.5 27 44821.5 28 53432.5 29 63441.5 30 73930.5 31 84161.0 32 95495.0 33 106464.5 34 116842.5 35 127113.0 36 139530.5 37 153101.0 38 164497.5 39 172664.0 40 179365.0 41 184449.0 42 186327.0 43 188441.5 44 191952.5 45 198604.5 46 205351.5 47 209047.0 48 209394.0 49 206719.0 50 203240.5 51 197106.0 52 188806.0 53 180117.0 54 171112.0 55 161159.0 56 149912.0 57 137140.0 58 122866.5 59 107564.5 60 90753.5 61 74688.5 62 60040.0 63 46536.0 64 35220.5 65 26378.5 66 19705.0 67 15017.5 68 11396.5 69 8197.5 70 5802.5 71 4199.5 72 2979.0 73 2011.0 74 1358.5 75 896.0 76 565.0 77 335.5 78 200.5 79 125.0 80 87.5 81 63.5 82 49.0 83 34.5 84 19.5 85 11.5 86 7.5 87 5.5 88 4.5 89 3.5 90 2.0 91 1.5 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 5.869250108176351E-4 4 0.018822077933117264 5 7.083577716764562E-4 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.007804326208283801 26-27 0.05213785455310599 28-29 0.08558799652663486 30-31 0.07589217165606393 32-33 0.03591402462986655 34-35 0.0045344745399953906 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 3.0728851032895457E-4 56-57 7.635129340750844E-4 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 2.362459665430825E-5 72-73 0.012728826883663766 74-75 0.026476207904843403 76-77 0.003627683226818164 78-79 0.0 80-81 0.0 82-83 0.011528100275238077 84-85 0.04993372650519788 86-87 0.04062721075279584 88-89 0.011036157387709352 90-91 1.4332466045410724E-4 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 55.0 20-21 221.0 22-23 617.0 24-25 1772.0 26-27 2228.0 28-29 3959.0 30-31 9342.0 32-33 12193.0 34-35 17519.0 36-37 28738.0 38-39 34448.0 40-41 34651.0 42-43 37472.0 44-45 44504.0 46-47 43742.0 48-49 38218.0 50-51 33958.0 52-53 32640.0 54-55 36212.0 56-57 39062.0 58-59 39020.0 60-61 39182.0 62-63 39070.0 64-65 41943.0 66-67 45773.0 68-69 41756.0 70-71 38280.0 72-73 36871.0 74-75 37321.0 76-77 37655.0 78-79 39538.0 80-81 39881.0 82-83 39258.0 84-85 39079.0 86-87 41310.0 88-89 44303.0 90-91 46277.0 92-93 46854.0 94-95 53239.0 96-97 156325.0 98-99 301888.0 100-101 3244632.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.76057183201983 #Duplication Level Percentage of deduplicated Percentage of total 1 92.08939029715614 81.73906942437637 2 5.849091297968806 10.383373766108047 3 1.2201881003095008 3.249137805782918 4 0.3899729478675456 1.3845688740696722 5 0.17057783436858093 0.7570293060211404 6 0.09373359090841417 0.49919082773396745 7 0.05520404435306074 0.34299597809524995 8 0.02859360597558232 0.20303878537057166 9 0.023409922928581472 0.1870090331115963 >10 0.07779007638366454 1.0792657587948709 >50 0.0015883255034039303 0.0899905391427514 >100 4.2742723355162414E-4 0.07037370567489121 >500 3.2529043144401015E-5 0.01495619571794358 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.0238793476470176E-5 0.0 0.0 0.0 3 0.0 2.0238793476470176E-5 0.0 4.047758695294035E-5 0.0 4 0.0 4.047758695294035E-5 0.0 6.071638042941053E-5 0.0 5 0.0 4.047758695294035E-5 0.0 8.09551739058807E-5 0.0 6 0.0 4.047758695294035E-5 0.0 8.09551739058807E-5 0.0 7 0.0 4.047758695294035E-5 0.0 8.09551739058807E-5 0.0 8 0.0 6.071638042941053E-5 0.0 8.09551739058807E-5 0.0 9 0.0 1.4167155433529124E-4 0.0 1.2143276085882106E-4 0.0 10-11 0.0 1.4167155433529124E-4 0.0 1.2143276085882106E-4 0.0 12-13 0.0 1.4167155433529124E-4 0.0 1.2143276085882106E-4 0.0 14-15 0.0 2.631043151941123E-4 0.0 1.4167155433529124E-4 2.0238793476470176E-5 16-17 0.0 2.631043151941123E-4 0.0 1.4167155433529124E-4 2.0238793476470176E-5 18-19 0.0 2.631043151941123E-4 0.0 1.517909510735263E-4 2.0238793476470176E-5 20-21 0.0 2.833431086705825E-4 0.0 1.922685380264667E-4 2.0238793476470176E-5 22-23 0.0 3.035819021470526E-4 0.0 2.2262672824117195E-4 2.0238793476470176E-5 24-25 0.0 3.44059489099993E-4 0.0 2.428655217176421E-4 2.0238793476470176E-5 26-27 0.0 3.44059489099993E-4 0.0 2.732237119323474E-4 2.0238793476470176E-5 28-29 0.0 3.44059489099993E-4 0.0 5.768056140794001E-4 4.047758695294035E-5 30-31 0.0 3.642982825764632E-4 0.0 0.0013357603694470316 4.047758695294035E-5 32-33 0.0 3.642982825764632E-4 0.0 0.003329281526879344 6.071638042941053E-5 34-35 0.0 4.6549224995881403E-4 0.0 0.005990682869035173 6.071638042941053E-5 36-37 0.0 5.464474238646948E-4 0.0 0.010129516134973322 6.071638042941053E-5 38-39 0.0 5.869250108176351E-4 0.0 0.016160676590961435 8.09551739058807E-5 40-41 0.0 6.678801847235158E-4 0.0 0.021787061177420144 8.09551739058807E-5 42-43 0.0 6.88118978199986E-4 0.0 0.027474162144308263 8.09551739058807E-5 44-45 0.0 7.488353586293966E-4 0.0 0.03408212821437578 8.09551739058807E-5 46-47 0.0 7.893129455823368E-4 0.0 0.04138833265938151 1.0119396738235088E-4 48-49 0.0 7.893129455823368E-4 0.0 0.049038596593487235 1.0119396738235088E-4 50-51 0.0 8.297905325352772E-4 0.0 0.05685077087540473 1.0119396738235088E-4 52-53 0.0 8.297905325352772E-4 0.0 0.06372184126066635 1.0119396738235088E-4 54-55 0.0 8.399099292735123E-4 0.0 0.07085601596112209 1.0119396738235088E-4 56-57 0.0 8.500293260117474E-4 0.0 0.07618893804217197 1.0119396738235088E-4 58-59 0.0 8.702681194882176E-4 0.0 0.0818153226286307 1.0119396738235088E-4 60-61 0.0 9.309844999176281E-4 0.0 0.08701669255208352 1.0119396738235088E-4 62-63 0.0 9.815814836088036E-4 0.0 0.09223830126901283 1.0119396738235088E-4 64-65 0.0 0.0011738500216352701 0.0 0.0974801487794186 1.0119396738235088E-4 66-67 0.0 0.0011738500216352701 0.0 0.10266127990939497 1.0119396738235088E-4 68-69 0.0 0.0011738500216352701 0.0 0.10831802268606838 1.0119396738235088E-4 70-71 0.0 0.001183969418373505 0.0 0.11334736286497123 1.0119396738235088E-4 72-73 0.0 0.0011940888151117403 0.0 0.11718261422876233 1.4167155433529124E-4 74-75 0.0 0.0012042082118499755 0.0 0.11963150823941521 1.4167155433529124E-4 76-77 0.0 0.0012244470053264455 0.0 0.12230302897830927 1.4167155433529124E-4 78-79 0.0 0.0012345664020646807 0.0 0.12411440099445335 1.4167155433529124E-4 80-81 0.0 0.0012345664020646807 0.0 0.12454953505419747 1.517909510735263E-4 82-83 0.0 0.0012345664020646807 0.0 0.12494419152698863 1.821491412882316E-4 84-85 0.0 0.0012345664020646807 0.0 0.1250858630813239 1.821491412882316E-4 86-87 0.0 0.001275043989017621 0.0 0.12511622127153862 1.821491412882316E-4 88 0.0 0.0013155215759705614 0.0 0.12511622127153862 1.821491412882316E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6990 0.0 53.157303 1 GTATCAA 13410 0.0 39.959763 1 TCAACGC 16590 0.0 31.735785 4 CTTATAC 3930 0.0 31.623957 1 ATCAACG 16850 0.0 31.27135 3 TATCAAC 17105 0.0 31.004225 2 CAACGCA 17080 0.0 30.967638 5 AACGCAG 17505 0.0 30.264399 6 ACGCAGA 19830 0.0 26.630167 7 CGCAGAG 20085 0.0 26.292068 8 TATACAC 5970 0.0 24.38247 3 TGGTATC 3070 0.0 23.291466 2 TTATACA 5865 0.0 22.93216 2 GTGGTAT 3370 0.0 22.733616 1 GCAGAGT 23225 0.0 22.645796 9 CTCGTAT 5840 0.0 22.587788 9 TCTCGTA 5890 0.0 21.673586 8 GAGTACT 14105 0.0 21.148022 12-13 GTACATG 15970 0.0 21.081305 1 AATCTCG 6080 0.0 21.066273 6 >>END_MODULE