##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138769_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5913750 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.83959670259987 33.0 33.0 33.0 33.0 33.0 2 32.83547004861551 33.0 33.0 33.0 33.0 33.0 3 32.834384612132745 33.0 33.0 33.0 33.0 33.0 4 36.788754512787996 37.0 37.0 37.0 37.0 37.0 5 36.80170771507081 37.0 37.0 37.0 37.0 37.0 6 36.81216402451913 37.0 37.0 37.0 37.0 37.0 7 36.80289004438808 37.0 37.0 37.0 37.0 37.0 8 36.7980929190446 37.0 37.0 37.0 37.0 37.0 9 36.792430014796025 37.0 37.0 37.0 37.0 37.0 10-11 36.771492284929195 37.0 37.0 37.0 37.0 37.0 12-13 36.75952534347918 37.0 37.0 37.0 37.0 37.0 14-15 39.122893172690766 40.0 40.0 40.0 37.0 40.0 16-17 39.08440355104629 40.0 40.0 40.0 37.0 40.0 18-19 39.10984028746566 40.0 40.0 40.0 37.0 40.0 20-21 39.14870254732174 40.0 40.0 40.0 37.0 40.0 22-23 39.16827048956637 40.0 40.0 40.0 37.0 40.0 24-25 39.07644292425417 40.0 40.0 40.0 37.0 40.0 26-27 39.002609232478264 40.0 40.0 40.0 37.0 40.0 28-29 38.9790234093537 40.0 40.0 40.0 37.0 40.0 30-31 38.934032513303784 40.0 40.0 40.0 37.0 40.0 32-33 38.783894443008165 40.0 40.0 40.0 37.0 40.0 34-35 38.86479311139682 40.0 40.0 40.0 37.0 40.0 36-37 38.54490837101831 40.0 37.0 40.0 37.0 40.0 38-39 38.73793002175033 40.0 37.0 40.0 37.0 40.0 40-41 38.74820162794698 40.0 37.0 40.0 37.0 40.0 42-43 38.69935377229095 40.0 37.0 40.0 37.0 40.0 44-45 38.61780490676695 40.0 37.0 40.0 37.0 40.0 46-47 38.541535175633925 40.0 37.0 40.0 37.0 40.0 48-49 38.49218152224557 40.0 37.0 40.0 37.0 40.0 50-51 38.43811029684964 40.0 37.0 40.0 37.0 40.0 52-53 38.380588776221444 40.0 37.0 40.0 37.0 40.0 54-55 38.302016759521415 40.0 37.0 40.0 37.0 40.0 56-57 38.185073629590676 40.0 37.0 40.0 37.0 40.0 58-59 38.05529384761764 40.0 37.0 40.0 37.0 40.0 60-61 37.900601987419925 40.0 37.0 40.0 35.0 40.0 62-63 37.70790863918617 38.5 37.0 40.0 33.0 40.0 64-65 37.48476314100032 37.0 37.0 40.0 33.0 40.0 66-67 37.243739538265665 37.0 37.0 40.0 33.0 40.0 68-69 36.984225170458856 37.0 37.0 40.0 33.0 40.0 70-71 36.72517235274164 37.0 37.0 40.0 33.0 40.0 72-73 36.47001157597639 37.0 37.0 37.0 33.0 40.0 74-75 36.218754356738344 37.0 37.0 37.0 33.0 40.0 76-77 34.54181698531302 35.0 33.0 37.0 30.0 37.0 78-79 35.81505050467038 37.0 37.0 37.0 33.0 37.0 80-81 35.92615960335796 37.0 37.0 37.0 33.0 37.0 82-83 35.849942239828025 37.0 37.0 37.0 33.0 37.0 84-85 35.73772268421618 37.0 37.0 37.0 33.0 37.0 86-87 35.65838142143238 37.0 37.0 37.0 33.0 37.0 88-89 35.58125591727041 37.0 37.0 37.0 33.0 37.0 90-91 35.51291008593725 37.0 35.0 37.0 33.0 37.0 92-93 35.447881479593875 37.0 33.0 37.0 33.0 37.0 94-95 35.402460914880095 37.0 33.0 37.0 33.0 37.0 96-97 35.35988610594886 37.0 33.0 37.0 33.0 37.0 98-99 35.31514200994798 37.0 33.0 37.0 33.0 37.0 100 35.22470364482294 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 1.0 16 0.0 17 0.0 18 0.0 19 5.0 20 19.0 21 84.0 22 336.0 23 915.0 24 2310.0 25 4752.0 26 8738.0 27 14218.0 28 21750.0 29 30964.0 30 43652.0 31 59162.0 32 81016.0 33 111051.0 34 160923.0 35 253118.0 36 511287.0 37 1673204.0 38 2818050.0 39 118195.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.06799408158952 19.913625026421474 14.434563517226803 23.583817374762205 2 14.729655463961109 20.89704502219404 41.52328049038258 22.85001902346227 3 18.205187606426424 25.916844079266653 30.394371722658025 25.4835965916489 4 12.61875985401929 18.11201303259061 38.67741260049366 30.59181451289644 5 13.59483057022444 37.48440271377139 35.20678885886627 13.713977857137905 6 30.005580215599238 37.50620164870006 18.805072923272036 13.683145212428663 7 26.62153455928979 32.744079475797925 22.812462481504966 17.821923483407314 8 24.60161488057493 36.12482773198055 21.089799196787148 18.183758190657368 9 25.76164024519129 16.921800887761574 21.20158951595857 36.11496935108857 10-11 24.17809342633693 26.736021982667513 28.670750369900656 20.415134221094906 12-13 25.18350454449376 24.378017332487847 28.754123863876558 21.68435425914183 14-15 22.369038258296342 25.69425491439442 26.631528218135703 25.305178609173534 16-17 21.750615091946734 28.783521454238002 27.295193405199747 22.170670048615516 18-19 21.774051997463538 27.920794757979284 29.11419995772564 21.190953286831537 20-21 22.600716833513808 26.980163592801837 29.15190314470099 21.267216428983367 22-23 22.304630157397803 26.9354893670849 28.992956599022996 21.7669238764943 24-25 22.131082443364416 27.05826342155224 28.986937969288405 21.82371616579493 26-27 22.01947009528859 27.239342816993396 28.929886225534784 21.811300862183234 28-29 21.925828397138602 27.253572468749105 28.976817096004492 21.8437820381078 30-31 22.247461993929342 27.104956823964084 28.88521574789903 21.76236543420755 32-33 22.017842660178427 27.28080746317457 28.766928659082897 21.934421217564108 34-35 22.14811464903202 27.367101974534563 28.771636118678913 21.713147257754503 36-37 22.22548579121514 27.31835355165585 28.611154041567104 21.84500661556191 38-39 22.00061691829731 27.396058627160997 28.7287704622542 21.874553992287492 40-41 22.308143415496858 27.252449741630315 28.57641892125938 21.86298792161345 42-43 22.198032446392922 27.379785006520198 28.325174464616083 22.097008082470797 44-45 22.251464884408897 27.48727073518133 28.163173003177384 22.098091377232386 46-47 22.363397917011163 27.5423723939968 27.810901128854066 22.28332856013797 48-49 22.27877605912433 27.692338042139493 27.743789933460672 22.28509596527551 50-51 22.39483736213453 27.77328088932769 27.60137949363087 22.23050225490691 52-53 22.51432989239521 27.665325552266175 27.532413234797477 22.287931320541144 54-55 22.443989288002673 27.60125557460154 27.513905698643843 22.440849438751947 56-57 22.446877403165093 27.733224297861852 27.497047211500604 22.32285108747245 58-59 22.41470037744037 27.749651466898978 27.525115942022264 22.31053221363839 60-61 22.54025685090107 27.74399849561081 27.45519614773184 22.26054850575628 62-63 22.492537818168902 27.795931428278603 27.43137321949238 22.280157534060113 64-65 22.45195422975218 27.730645905009187 27.40299118581648 22.414408679422152 66-67 22.497282179237285 27.74244158481277 27.294094546638764 22.46618168931118 68-69 22.441852632287006 27.733197616436563 27.376022624465442 22.448927126810993 70-71 22.46551779456658 27.56329519135694 27.406313423067573 22.564873591008904 72-73 22.494998868847407 27.581180494264974 27.329286244190605 22.594534392697017 74-75 22.385445082450513 27.7065725413295 27.314863489569202 22.593118886650785 76-77 22.514033114645414 27.649657346642222 27.283529504842612 22.552780033869755 78-79 22.4764300377178 27.655024874505614 27.236893849741474 22.631651238035115 80-81 22.510985519554026 27.69025452444418 27.236475853694852 22.562284102306947 82-83 22.529266291800102 27.661727285964204 27.278915749620296 22.5300906726154 84-85 22.59568568758183 27.664950739070072 27.233883776261912 22.505479797086185 86-87 22.508571653770872 27.686612456156485 27.249688004939376 22.55512788513327 88-89 22.54534487135022 27.665804319760312 27.242285084477192 22.546565724412275 90-91 22.569550515750745 27.67216504539023 27.255101315733825 22.503183123125197 92-93 22.592180877223523 27.626143896174465 27.266071718854633 22.51560350774738 94-95 22.48737042918496 27.70200029180474 27.281082399875185 22.529546879135115 96-97 22.575565077239204 27.751221119564264 27.341889422036044 22.331324381160492 98-99 23.67950206578728 29.696186958742487 27.504080787918035 19.120230187552202 100 22.568517266186138 30.63820878782073 21.35761946510793 25.4356544808852 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1500.0 1 1285.5 2 1588.5 3 2285.0 4 3137.5 5 4947.0 6 6454.0 7 7574.5 8 8421.5 9 8570.5 10 8102.0 11 7648.0 12 8536.0 13 11246.0 14 17449.5 15 25854.5 16 32878.5 17 37362.5 18 38353.5 19 36220.5 20 32559.0 21 28368.0 22 25512.5 23 25857.5 24 29132.5 25 35259.5 26 44260.0 27 54462.0 28 65533.5 29 78425.5 30 91621.5 31 104585.5 32 118246.5 33 132377.0 34 145954.0 35 158015.5 36 170932.5 37 183928.5 38 194367.5 39 202991.5 40 211987.0 41 220415.5 42 225949.0 43 231081.0 44 235843.0 45 240807.5 46 244118.5 47 245536.0 48 246295.5 49 243463.0 50 239114.5 51 233276.5 52 224332.0 53 212811.0 54 200416.0 55 186862.0 56 172135.0 57 156258.5 58 139140.5 59 121081.0 60 101390.5 61 82946.0 62 66354.0 63 51319.5 64 38888.5 65 28955.5 66 21773.0 67 16660.5 68 12383.5 69 8794.5 70 6168.0 71 4378.5 72 3077.5 73 2040.5 74 1289.5 75 847.5 76 577.5 77 365.0 78 235.0 79 157.5 80 111.0 81 77.0 82 48.5 83 35.5 84 26.0 85 19.0 86 15.5 87 12.0 88 9.0 89 5.5 90 3.5 91 2.0 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 6.763897696047348E-4 4 0.02008877615726062 5 0.0010314943986472205 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 8.455019381440928E-6 22-23 0.0 24-25 0.00778060520084406 26-27 0.05109781627898596 28-29 0.08686735398213985 30-31 0.07672317237226947 32-33 0.03543497063159142 34-35 0.004477067075061434 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 2.9207814696861217E-4 56-57 8.554734617874263E-4 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 9.752236626709152E-6 72-73 0.011915289865253913 74-75 0.026778558295224176 76-77 0.003865529253043553 78-79 0.0 80-81 0.0 82-83 0.010808525072171891 84-85 0.04875837784299469 86-87 0.03974090985778364 88-89 0.010668055955386509 90-91 1.7174130006876093E-4 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 53.0 20-21 282.0 22-23 696.0 24-25 1969.0 26-27 2484.0 28-29 4738.0 30-31 10632.0 32-33 14266.0 34-35 19619.0 36-37 28043.0 38-39 33920.0 40-41 36341.0 42-43 43573.0 44-45 52401.0 46-47 51685.0 48-49 45255.0 50-51 40216.0 52-53 39229.0 54-55 42064.0 56-57 43301.0 58-59 42723.0 60-61 42069.0 62-63 41746.0 64-65 44532.0 66-67 46754.0 68-69 46608.0 70-71 45797.0 72-73 44182.0 74-75 44672.0 76-77 44927.0 78-79 47462.0 80-81 47238.0 82-83 46401.0 84-85 46314.0 86-87 48496.0 88-89 51582.0 90-91 53494.0 92-93 55301.0 94-95 65795.0 96-97 190425.0 98-99 365670.0 100-101 3940795.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.63490633290603 #Duplication Level Percentage of deduplicated Percentage of total 1 91.98809133210753 81.53355858964156 2 5.926433123406339 10.50577689562705 3 1.2174066782846091 3.237141806964318 4 0.3896066283570387 1.381309880444218 5 0.19478714183163265 0.8632470035550619 6 0.09424598059532985 0.5012090197391963 7 0.05473286907954726 0.3395869906937816 8 0.03520610034644589 0.24963915252432972 9 0.02275707561044835 0.18153641386286545 >10 0.07491025232066281 1.0437686800113923 >50 0.0013793408061747567 0.07943228115294303 >100 4.434772542268993E-4 0.0837932857832833 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.381948848023674E-5 0.0 0.0 0.0 3 0.0 3.381948848023674E-5 0.0 0.0 0.0 4 0.0 5.072923272035511E-5 0.0 0.0 0.0 5 0.0 5.072923272035511E-5 0.0 0.0 0.0 6 1.690974424011837E-5 5.072923272035511E-5 0.0 0.0 0.0 7 1.690974424011837E-5 5.072923272035511E-5 0.0 0.0 0.0 8 1.690974424011837E-5 8.454872120059185E-5 0.0 1.690974424011837E-5 0.0 9 1.690974424011837E-5 1.1836820968082858E-4 0.0 3.381948848023674E-5 0.0 10-11 1.690974424011837E-5 1.2682308180088776E-4 0.0 9.300359332065102E-5 0.0 12-13 1.690974424011837E-5 1.3527795392094695E-4 0.0 1.099133375607694E-4 0.0 14-15 1.690974424011837E-5 2.4519129148171633E-4 0.0 1.1836820968082858E-4 1.690974424011837E-5 16-17 1.690974424011837E-5 2.536461636017755E-4 0.0 1.521876981610653E-4 1.690974424011837E-5 18-19 1.690974424011837E-5 2.959205242020715E-4 0.0 1.521876981610653E-4 1.690974424011837E-5 20-21 1.690974424011837E-5 3.381948848023674E-4 0.0 1.521876981610653E-4 1.690974424011837E-5 22-23 1.690974424011837E-5 3.804692454026633E-4 0.0 1.521876981610653E-4 2.5364616360177554E-5 24-25 1.690974424011837E-5 4.2274360600295924E-4 0.0 1.9446205876136124E-4 5.072923272035511E-5 26-27 2.5364616360177554E-5 4.3965335024307757E-4 0.0 2.4519129148171633E-4 5.072923272035511E-5 28-29 3.381948848023674E-5 4.3965335024307757E-4 0.0 3.9737898964278167E-4 5.072923272035511E-5 30-31 3.381948848023674E-5 4.3965335024307757E-4 0.0 9.554005495666878E-4 5.918410484041429E-5 32-33 3.381948848023674E-5 4.3965335024307757E-4 0.0 0.0021729021348552103 8.454872120059185E-5 34-35 3.381948848023674E-5 4.734728387233143E-4 0.0 0.0038807863031071655 1.0145846544071021E-4 36-37 3.381948848023674E-5 5.07292327203551E-4 0.0 0.006045233565842316 1.0145846544071021E-4 38-39 3.381948848023674E-5 5.411118156837878E-4 0.0 0.00964700908898753 1.0145846544071021E-4 40-41 3.381948848023674E-5 5.580215599239062E-4 0.0 0.013443246670894103 1.3527795392094695E-4 42-43 3.381948848023674E-5 6.00295920524202E-4 0.0 0.017383217078841683 1.3527795392094695E-4 44-45 3.381948848023674E-5 6.256605368843796E-4 0.0 0.02173747622067216 1.3527795392094695E-4 46-47 3.381948848023674E-5 6.42570281124498E-4 0.0 0.02673430564362714 1.3527795392094695E-4 48-49 3.381948848023674E-5 6.42570281124498E-4 0.0 0.03187486789262312 1.3527795392094695E-4 50-51 3.381948848023674E-5 7.440287465652082E-4 0.0 0.0368716973155781 1.3527795392094695E-4 52-53 3.381948848023674E-5 7.440287465652082E-4 0.0 0.04159797083069119 1.4373282604100614E-4 54-55 3.381948848023674E-5 7.524836186852674E-4 0.0 0.046383428450644686 1.521876981610653E-4 56-57 3.381948848023674E-5 7.609384908053266E-4 0.0 0.051566265060240965 1.690974424011837E-4 58-59 3.381948848023674E-5 7.609384908053266E-4 0.0 0.05700274783343902 1.690974424011837E-4 60-61 3.381948848023674E-5 7.947579792855633E-4 0.0 0.06234622701331642 1.690974424011837E-4 62-63 3.381948848023674E-5 8.032128514056225E-4 0.0 0.06763897696047347 1.690974424011837E-4 64-65 3.381948848023674E-5 8.454872120059184E-4 0.0 0.0731008243500317 1.690974424011837E-4 66-67 3.381948848023674E-5 8.623969562460368E-4 0.0 0.07885859226379202 1.8600718664130205E-4 68-69 3.381948848023674E-5 8.70851828366096E-4 0.0 0.08456563094483197 1.8600718664130205E-4 70-71 3.381948848023674E-5 8.877615726062143E-4 0.0 0.08920735573874446 2.0291693088142043E-4 72-73 3.381948848023674E-5 8.962164447262735E-4 0.0 0.09278376664552948 2.1982667512153878E-4 74-75 3.381948848023674E-5 9.300359332065103E-4 0.0 0.09567533291058972 2.1982667512153878E-4 76-77 3.381948848023674E-5 9.723102938068061E-4 0.0 0.09873599661805116 2.1982667512153878E-4 78-79 3.381948848023674E-5 9.807651659268653E-4 0.0 0.10081589515958571 2.1982667512153878E-4 80-81 3.381948848023674E-5 9.807651659268653E-4 0.0 0.10144155569647009 2.1982667512153878E-4 82-83 3.381948848023674E-5 9.807651659268653E-4 0.0 0.1019403931515536 2.1982667512153878E-4 84-85 3.381948848023674E-5 9.976749101669837E-4 0.0 0.10212640033819488 2.1982667512153878E-4 86-87 3.381948848023674E-5 9.976749101669837E-4 0.0 0.1022447685478757 2.1982667512153878E-4 88 3.381948848023674E-5 0.0010653138871274572 0.0 0.10227013316423589 2.3673641936165717E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8290 0.0 49.77467 1 GTATCAA 15115 0.0 38.230633 1 TCAACGC 18015 0.0 31.553387 4 ATCAACG 18125 0.0 31.433006 3 CAACGCA 18725 0.0 30.37521 5 TATCAAC 19100 0.0 29.985315 2 AACGCAG 19130 0.0 29.799252 6 ACGCAGA 22090 0.0 25.748112 7 CGCAGAG 22390 0.0 25.364887 8 GTGGTAT 3855 0.0 24.982967 1 TGGTATC 3690 0.0 24.592085 2 GCAGAGT 26175 0.0 21.680681 9 GAGTACT 15850 0.0 20.548092 12-13 GTACATG 17920 0.0 19.992786 1 TACATGG 17695 0.0 19.690634 2 CAGAGTA 25380 0.0 19.172775 10-11 ACATGGG 18175 0.0 18.81734 3 GTACTTT 17320 0.0 18.73046 14-15 AGAGTAC 23690 0.0 18.697838 10-11 AGTACTT 16990 0.0 17.317907 12-13 >>END_MODULE