##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138761_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9345306 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.69202902505279 33.0 33.0 33.0 33.0 33.0 2 32.622793410938066 33.0 33.0 33.0 33.0 33.0 3 32.69557829353047 33.0 33.0 33.0 33.0 33.0 4 36.670888144272645 37.0 37.0 37.0 37.0 37.0 5 36.67428214763647 37.0 37.0 37.0 37.0 37.0 6 36.66987073510487 37.0 37.0 37.0 37.0 37.0 7 36.65438595590128 37.0 37.0 37.0 37.0 37.0 8 36.64974790552605 37.0 37.0 37.0 37.0 37.0 9 36.64774476084571 37.0 37.0 37.0 37.0 37.0 10-11 36.650965308145075 37.0 37.0 37.0 37.0 37.0 12-13 36.64911421841083 37.0 37.0 37.0 37.0 37.0 14-15 38.82364964828332 40.0 37.0 40.0 37.0 40.0 16-17 38.75110499324474 40.0 37.0 40.0 37.0 40.0 18-19 38.80819467013707 40.0 37.0 40.0 37.0 40.0 20-21 38.831497571457376 40.0 37.0 40.0 37.0 40.0 22-23 38.83888820455009 40.0 37.0 40.0 37.0 40.0 24-25 38.82938759469066 40.0 37.0 40.0 37.0 40.0 26-27 38.74484935426503 40.0 37.0 40.0 37.0 40.0 28-29 38.63649742085356 40.0 37.0 40.0 37.0 40.0 30-31 38.46844411322487 40.0 37.0 40.0 37.0 40.0 32-33 38.3533183221286 40.0 37.0 40.0 37.0 40.0 34-35 38.320266638817344 40.0 37.0 40.0 37.0 40.0 36-37 38.294688128251174 40.0 37.0 40.0 37.0 40.0 38-39 38.24624406588315 40.0 37.0 40.0 37.0 40.0 40-41 38.22496971326381 40.0 37.0 40.0 37.0 40.0 42-43 38.192665290752146 40.0 37.0 40.0 37.0 40.0 44-45 38.09444816284247 40.0 37.0 40.0 37.0 40.0 46-47 37.71656472030823 40.0 37.0 40.0 33.0 40.0 48-49 37.88318165603023 40.0 37.0 40.0 33.0 40.0 50-51 37.89461285594227 40.0 37.0 40.0 33.0 40.0 52-53 37.85626315564509 40.0 37.0 40.0 33.0 40.0 54-55 37.75443202079709 40.0 37.0 40.0 33.0 40.0 56-57 37.57971366916659 40.0 37.0 40.0 33.0 40.0 58-59 37.40542799219449 38.5 37.0 40.0 33.0 40.0 60-61 37.220249042649186 37.0 37.0 40.0 33.0 40.0 62-63 37.070274923300076 37.0 37.0 40.0 33.0 40.0 64-65 36.89143948943374 37.0 37.0 40.0 33.0 40.0 66-67 36.681431168458744 37.0 37.0 40.0 33.0 40.0 68-69 36.476955059232004 37.0 37.0 40.0 33.0 40.0 70-71 36.26117420214879 37.0 37.0 38.5 33.0 40.0 72-73 35.985427852279436 37.0 37.0 37.0 33.0 40.0 74-75 35.65639450863731 37.0 35.0 37.0 33.0 40.0 76-77 33.463123666002446 35.0 33.0 37.0 27.0 37.0 78-79 35.17629086792179 37.0 33.0 37.0 33.0 37.0 80-81 35.40022871698481 37.0 33.0 37.0 33.0 37.0 82-83 35.23500740227042 37.0 33.0 37.0 33.0 37.0 84-85 35.09215202787876 37.0 33.0 37.0 33.0 37.0 86-87 35.00249200288329 37.0 33.0 37.0 33.0 37.0 88-89 34.83137826488924 37.0 33.0 37.0 33.0 37.0 90-91 34.77578625166275 37.0 33.0 37.0 33.0 37.0 92-93 34.82440382996484 37.0 33.0 37.0 33.0 37.0 94-95 34.80998385460736 37.0 33.0 37.0 33.0 37.0 96-97 34.80611776364057 37.0 33.0 37.0 33.0 37.0 98-99 34.81467353082242 37.0 33.0 37.0 33.0 37.0 100 34.77049359471361 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 6.0 18 8.0 19 20.0 20 66.0 21 228.0 22 812.0 23 2243.0 24 5346.0 25 10969.0 26 19908.0 27 33240.0 28 50405.0 29 71933.0 30 99660.0 31 135564.0 32 184514.0 33 255609.0 34 365234.0 35 566535.0 36 1110250.0 37 2988172.0 38 3319002.0 39 125581.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.61776367919506 20.15125242033299 14.810977276825103 22.420006623646845 2 14.90300965409202 20.806772631259054 42.379259646066565 21.91095806858236 3 17.843021940640575 27.109791803500066 31.18163278976633 23.865553466093033 4 12.127831876238188 18.073180268254458 39.22533943778834 30.573648417719014 5 12.642560874946204 38.05386361880499 35.51300513862253 13.79057036762627 6 28.631571828680624 38.3903855047657 18.726952333075022 14.251090333478647 7 25.403427132295082 33.99993536862249 23.22484678404324 17.371790715039186 8 24.455828412681193 36.0401895882275 21.20038658980241 18.303595409288896 9 25.913982912919064 16.575861721381834 21.651190447910427 35.85896491778867 10-11 24.059256464392398 26.946671782319314 28.615094346285346 20.378977407002942 12-13 25.180097284343827 24.855188315519666 28.99912873542713 20.965585664709376 14-15 22.269137040563468 25.926518618009943 27.816970359237033 23.98737398218956 16-17 20.63714125572774 28.950876514904916 28.412975455271344 21.999006774096 18-19 20.39956744059531 27.405105836020777 31.49597776680614 20.699348956577772 20-21 21.651386101595016 26.52961170835355 31.52142228998524 20.297579900066197 22-23 21.304261347780713 26.443669879765768 31.410666214749078 20.84140255770444 24-25 20.82392632444735 26.76693827612339 31.63453114143893 20.774604257990323 26-27 20.69357127415875 27.033078944720558 31.492075776059124 20.78127400506157 28-29 20.560172530652356 27.233471418245593 31.433420014960017 20.77293603614203 30-31 21.010634083076724 27.125037114347215 31.17934474502477 20.684984057551294 32-33 20.633059068178756 27.41559749064022 30.99055120344023 20.96079223774079 34-35 20.762253486426776 27.503880434261635 31.017047885762445 20.71681819354914 36-37 21.014356678297474 27.23355571366258 30.845944298189988 20.906143309849963 38-39 20.741737942717613 27.509549889537094 30.8386122076622 20.91009996008309 40-41 21.070183179760548 27.598401732472517 30.577646406253905 20.75376868151303 42-43 21.2222331231659 27.671889974881292 29.972477688785183 21.13339921316763 44-45 21.19760457767169 28.12048260984224 29.495224753644827 21.18668805884124 46-47 21.450101588253446 27.95522650126322 28.807506155670655 21.787165754812683 48-49 21.547406614605165 28.10632220972426 28.568050700212634 21.77822047545794 50-51 21.422218164705995 28.305325960532713 28.344372213314706 21.928083661446585 52-53 21.72442539088837 28.280212656444498 28.107581315114526 21.88778063755261 54-55 21.748983842462476 28.234861322721024 28.100407642379377 21.91574719243713 56-57 21.80109040762441 28.381445104352498 27.83828034358763 21.97918414443546 58-59 21.689101468823008 28.365920326276196 28.088926848792404 21.856051356108395 60-61 21.868766986394586 28.348108780157855 27.911836028066517 21.871288205381045 62-63 21.778047299364943 28.31021594240643 27.92518428620772 21.9865524720209 64-65 21.684429833786034 28.36470597887642 27.881246307163032 22.069617880174512 66-67 21.95902786016302 28.396157184310493 27.51707238474713 22.12774257077935 68-69 21.880105476603937 28.13877073506016 27.78912253786216 22.192001250473744 70-71 21.902670403314904 27.7476333601833 27.84639924373165 22.503296992770146 72-73 22.133252921803898 27.873749513700723 27.79509887068941 22.19789869380597 74-75 21.867029625610115 28.0756537632588 27.72831926323868 22.3289973478924 76-77 22.01397108711942 27.892570666817345 27.642915284436214 22.450542961627022 78-79 22.16418941322432 27.9004489779448 27.489716748983206 22.445644859847672 80-81 22.156351054204386 27.75962263070281 27.59056732568372 22.493458989409085 82-83 22.373942487593823 27.581578222213864 27.713322653817112 22.3311566363752 84-85 22.621100888686215 27.51154793139563 27.509869960202384 22.357481219715776 86-87 22.162247271609598 27.725268889525474 27.59949551833816 22.512988320526773 88-89 22.42148872085757 27.507551399796082 27.511394117144896 22.55956576220145 90-91 22.45799374954049 27.42529208589925 27.757943845142453 22.358770319417808 92-93 22.572938288234134 27.502184884926745 27.544909228052884 22.379967598786237 94-95 22.356196353287135 27.32487179221331 27.658302758298024 22.660629096201525 96-97 22.473940498756043 27.415281150385212 27.78264548707851 22.328132863780233 98-99 23.478991020909312 29.441782644452662 27.886259276851742 19.19296705778628 100 22.704643407979262 30.02538862411474 21.65495629276262 25.615011675143386 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2976.0 1 3078.5 2 5549.0 3 8442.0 4 12181.0 5 21536.5 6 28767.5 7 32194.5 8 33172.0 9 30835.0 10 27131.5 11 23624.5 12 25913.5 13 36055.0 14 59906.0 15 93080.0 16 119792.0 17 134859.5 18 137105.0 19 127138.0 20 110047.0 21 89866.5 22 73795.5 23 67801.0 24 70842.5 25 81504.5 26 99092.5 27 117277.0 28 131545.5 29 148607.5 30 165892.5 31 181802.0 32 204760.0 33 230110.5 34 254585.5 35 277989.5 36 307370.0 37 331358.0 38 335343.0 39 338574.5 40 349668.0 41 358655.5 42 362697.0 43 372720.5 44 386889.0 45 400111.0 46 407757.0 47 411218.5 48 417777.0 49 414741.0 50 399181.0 51 378245.0 52 357629.0 53 339353.0 54 313843.5 55 278714.5 56 244473.5 57 210013.0 58 175949.0 59 149612.5 60 122155.5 61 94115.5 62 71263.5 63 51282.0 64 35323.0 65 24808.0 66 17818.0 67 13401.5 68 10493.5 69 7771.5 70 5652.0 71 4176.0 72 3294.5 73 2616.0 74 1939.5 75 1310.0 76 877.5 77 575.0 78 377.5 79 283.0 80 205.5 81 156.0 82 127.5 83 90.5 84 57.5 85 42.0 86 29.5 87 20.0 88 15.0 89 11.5 90 8.5 91 7.5 92 6.5 93 3.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 1.0700559189822142E-5 2 4.922257227318185E-4 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0014071235334616116 12-13 0.009015221117425155 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 5.354910624399715E-6 28-29 1.0720183538118318E-5 30-31 1.0744155810458264E-5 32-33 5.393363918740559E-6 34-35 0.0059094919560971374 36-37 0.0470603804334949 38-39 0.1538661063932646 40-41 0.1821395371852526 42-43 0.055323339701779786 44-45 0.005122765293918372 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.01502798261851302 64-65 0.10542070027523083 66-67 0.22824890980731688 68-69 0.25187430673160566 70-71 0.11648712124691409 72-73 0.007776072674969685 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 168.0 20-21 855.0 22-23 1970.0 24-25 3646.0 26-27 7316.0 28-29 15599.0 30-31 34750.0 32-33 44921.0 34-35 59252.0 36-37 81090.0 38-39 98064.0 40-41 105242.0 42-43 128802.0 44-45 155254.0 46-47 142156.0 48-49 116730.0 50-51 96353.0 52-53 89127.0 54-55 96454.0 56-57 97290.0 58-59 93441.0 60-61 88017.0 62-63 81641.0 64-65 82900.0 66-67 107976.0 68-69 99282.0 70-71 96440.0 72-73 92171.0 74-75 91976.0 76-77 87640.0 78-79 93047.0 80-81 96955.0 82-83 98271.0 84-85 106654.0 86-87 107251.0 88-89 111395.0 90-91 114103.0 92-93 116956.0 94-95 124776.0 96-97 274496.0 98-99 506443.0 100-101 5298436.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 77.49614292159043 #Duplication Level Percentage of deduplicated Percentage of total 1 87.23250963502986 67.60183034085287 2 7.62812854676657 11.823010801689723 3 2.373028894245985 5.5170175903665175 4 1.0370403478987125 3.2146650806485795 5 0.5630143119543584 2.1815718793057925 6 0.3354073183144698 1.5595664086227317 7 0.21121093847622152 1.1457623152329555 8 0.14640650817928577 0.9076751746010343 9 0.0991611803769557 0.6916148106089551 >10 0.3640269173127656 4.29627347923303 >50 0.007354703540228785 0.37016804727459246 >100 0.002341514138535032 0.33171306625971053 >500 1.5382658085223613E-4 0.08769062892625273 >1k 2.1535718521450297E-4 0.27144037637724316 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10-11 1.0700559189822142E-5 0.0 0.0 1.0700559189822142E-5 0.0 12-13 1.0700559189822142E-5 0.0 0.0 1.0700559189822142E-5 5.350279594911071E-6 14-15 1.0700559189822142E-5 1.0700559189822142E-5 0.0 1.0700559189822142E-5 1.0700559189822142E-5 16-17 1.0700559189822142E-5 1.0700559189822142E-5 0.0 1.6050838784733213E-5 2.1401118379644284E-5 18-19 1.0700559189822142E-5 1.0700559189822142E-5 0.0 3.2101677569466425E-5 2.1401118379644284E-5 20-21 1.0700559189822142E-5 1.0700559189822142E-5 0.0 4.815251635419964E-5 2.1401118379644284E-5 22-23 1.0700559189822142E-5 1.0700559189822142E-5 0.0 5.8853075544021776E-5 2.1401118379644284E-5 24-25 1.0700559189822142E-5 1.0700559189822142E-5 0.0 8.025419392366606E-5 2.1401118379644284E-5 26-27 1.0700559189822142E-5 1.0700559189822142E-5 0.0 1.979603450117096E-4 2.1401118379644284E-5 28-29 1.0700559189822142E-5 1.0700559189822142E-5 0.0 5.082765615165518E-4 2.1401118379644284E-5 30-31 1.0700559189822142E-5 1.0700559189822142E-5 0.0 0.001492728006980189 2.1401118379644284E-5 32-33 1.0700559189822142E-5 1.0700559189822142E-5 0.0 0.0033439247468194195 2.1401118379644284E-5 34-35 1.0700559189822142E-5 1.0700559189822142E-5 0.0 0.005473336025594026 3.2101677569466425E-5 36-37 1.0700559189822142E-5 1.0700559189822142E-5 0.0 0.008469492598744225 3.2101677569466425E-5 38-39 1.0700559189822142E-5 1.0700559189822142E-5 0.0 0.013209840319835435 3.2101677569466425E-5 40-41 1.0700559189822142E-5 1.0700559189822142E-5 0.0 0.01837821040851953 3.2101677569466425E-5 42-43 1.0700559189822142E-5 1.0700559189822142E-5 0.0 0.023460976023685045 3.2101677569466425E-5 44-45 1.0700559189822142E-5 1.0700559189822142E-5 0.0 0.030282582507196662 4.280223675928857E-5 46-47 1.0700559189822142E-5 1.0700559189822142E-5 0.0 0.0375001096807317 5.350279594911071E-5 48-49 1.0700559189822142E-5 1.0700559189822142E-5 0.0 0.04469088545629217 5.350279594911071E-5 50-51 1.0700559189822142E-5 1.0700559189822142E-5 0.0 0.05143223774588013 5.350279594911071E-5 52-53 1.0700559189822142E-5 1.0700559189822142E-5 0.0 0.05832339786412558 6.420335513893285E-5 54-55 1.0700559189822142E-5 1.0700559189822142E-5 0.0 0.06464742834531047 6.420335513893285E-5 56-57 1.0700559189822142E-5 1.0700559189822142E-5 0.0 0.071715147690188 6.420335513893285E-5 58-59 1.0700559189822142E-5 1.0700559189822142E-5 0.0 0.07851535305531997 6.420335513893285E-5 60-61 1.0700559189822142E-5 1.0700559189822142E-5 0.0 0.08465212375068296 6.420335513893285E-5 62-63 1.0700559189822142E-5 1.0700559189822142E-5 0.0 0.08975094020463321 7.490391432875499E-5 64-65 1.0700559189822142E-5 1.0700559189822142E-5 0.0 0.09458759295843283 9.095475311348821E-5 66-67 1.0700559189822142E-5 1.0700559189822142E-5 0.0 0.10072436365379582 9.630503270839927E-5 68-69 1.0700559189822142E-5 1.0700559189822142E-5 0.0 0.10794724110692577 9.630503270839927E-5 70-71 1.0700559189822142E-5 1.0700559189822142E-5 0.0 0.11355968440198748 9.630503270839927E-5 72-73 1.0700559189822142E-5 1.0700559189822142E-5 0.0 0.11809137121887715 1.0165531230331034E-4 74-75 1.0700559189822142E-5 1.0700559189822142E-5 0.0 0.12181516581693526 1.0700559189822142E-4 76-77 1.0700559189822142E-5 1.0700559189822142E-5 0.0 0.1254159039843104 1.0700559189822142E-4 78-79 1.0700559189822142E-5 1.0700559189822142E-5 0.0 0.12762556945700868 1.0700559189822142E-4 80-81 1.0700559189822142E-5 1.0700559189822142E-5 0.0 0.1283532074819166 1.0700559189822142E-4 82-83 1.0700559189822142E-5 1.0700559189822142E-5 0.0 0.12911829746398887 1.1770615108804355E-4 84-85 1.0700559189822142E-5 1.0700559189822142E-5 0.0 0.1295142181540123 1.1770615108804355E-4 86-87 1.0700559189822142E-5 1.0700559189822142E-5 0.0 0.12977103157456804 1.2305643068295463E-4 88 1.0700559189822142E-5 1.0700559189822142E-5 0.0 0.12979778297254257 1.284067102778657E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 25715 0.0 45.833088 1 GTATCAA 45950 0.0 34.817066 1 TATCAAC 57760 0.0 27.459476 2 ATCAACG 58535 0.0 27.144253 3 TCAACGC 58920 0.0 27.001291 4 CAACGCA 59375 0.0 26.75369 5 AACGCAG 59750 0.0 26.65763 6 ACGCAGA 66295 0.0 23.990429 7 CGCAGAG 66820 0.0 23.820147 8 GCAGAGT 73025 0.0 21.740595 9 GTGGTAT 12335 0.0 21.331732 1 ACATGGG 43795 0.0 20.347984 3 TGGTATC 12595 0.0 20.311956 2 TACATGG 44730 0.0 20.230932 2 GAGTACT 48205 0.0 20.200611 12-13 GTACATG 45630 0.0 20.089573 1 CAGAGTA 72685 0.0 18.952301 10-11 TGCGCGA 535 8.0035534E-11 18.706718 94 GTACTTT 52865 0.0 18.379875 14-15 CATGGGG 26765 0.0 18.313751 4 >>END_MODULE