##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138760_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9511762 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.67329617793212 33.0 33.0 33.0 33.0 33.0 2 32.607737136400175 33.0 33.0 33.0 33.0 33.0 3 32.680461832413386 33.0 33.0 33.0 33.0 33.0 4 36.64976741428139 37.0 37.0 37.0 37.0 37.0 5 36.65567809623496 37.0 37.0 37.0 37.0 37.0 6 36.65009669081291 37.0 37.0 37.0 37.0 37.0 7 36.63411185014932 37.0 37.0 37.0 37.0 37.0 8 36.62923525630688 37.0 37.0 37.0 37.0 37.0 9 36.629477272454885 37.0 37.0 37.0 37.0 37.0 10-11 36.63230193312238 37.0 37.0 37.0 37.0 37.0 12-13 36.631134904342645 37.0 37.0 37.0 37.0 37.0 14-15 38.77876853941467 40.0 37.0 40.0 37.0 40.0 16-17 38.69852977818411 40.0 37.0 40.0 37.0 40.0 18-19 38.758051347373915 40.0 37.0 40.0 37.0 40.0 20-21 38.78459537407285 40.0 37.0 40.0 37.0 40.0 22-23 38.79093259347906 40.0 37.0 40.0 37.0 40.0 24-25 38.787510766093376 40.0 37.0 40.0 37.0 40.0 26-27 38.69591720941105 40.0 37.0 40.0 37.0 40.0 28-29 38.568515820215936 40.0 37.0 40.0 37.0 40.0 30-31 38.38556079152727 40.0 37.0 40.0 37.0 40.0 32-33 38.26664442473878 40.0 37.0 40.0 37.0 40.0 34-35 38.21247058001302 40.0 37.0 40.0 37.0 40.0 36-37 38.17320016580586 40.0 37.0 40.0 37.0 40.0 38-39 38.1190489965932 40.0 37.0 40.0 37.0 40.0 40-41 38.12009878237664 40.0 37.0 40.0 37.0 40.0 42-43 38.1067035938859 40.0 37.0 40.0 37.0 40.0 44-45 38.006950108438446 40.0 37.0 40.0 33.0 40.0 46-47 37.618234034426635 40.0 37.0 40.0 33.0 40.0 48-49 37.81097379533992 40.0 37.0 40.0 33.0 40.0 50-51 37.7915843370145 40.0 37.0 40.0 33.0 40.0 52-53 37.784760293179346 40.0 37.0 40.0 33.0 40.0 54-55 37.70520775089419 40.0 37.0 40.0 33.0 40.0 56-57 37.500319410798554 40.0 37.0 40.0 33.0 40.0 58-59 37.34467445512401 38.5 37.0 40.0 33.0 40.0 60-61 37.17012037761728 37.0 37.0 40.0 33.0 40.0 62-63 37.06625182265813 37.0 37.0 40.0 33.0 40.0 64-65 36.92909941215778 37.0 37.0 40.0 33.0 40.0 66-67 36.753002087837416 37.0 37.0 40.0 33.0 40.0 68-69 36.575354611902085 37.0 37.0 40.0 33.0 40.0 70-71 36.37072528201813 37.0 37.0 40.0 33.0 40.0 72-73 36.1023440224969 37.0 37.0 37.0 33.0 40.0 74-75 35.77478430791061 37.0 37.0 37.0 33.0 40.0 76-77 33.60022990706514 35.0 33.0 37.0 27.0 37.0 78-79 35.27405363289573 37.0 33.0 37.0 33.0 37.0 80-81 35.48121417369512 37.0 33.0 37.0 33.0 37.0 82-83 35.31088204080474 37.0 33.0 37.0 33.0 37.0 84-85 35.157132971452455 37.0 33.0 37.0 33.0 37.0 86-87 35.06143694545099 37.0 33.0 37.0 33.0 37.0 88-89 34.891012159423944 37.0 33.0 37.0 33.0 37.0 90-91 34.83606911305692 37.0 33.0 37.0 33.0 37.0 92-93 34.884902880694895 37.0 33.0 37.0 33.0 37.0 94-95 34.87437979465156 37.0 33.0 37.0 33.0 37.0 96-97 34.87776390599619 37.0 33.0 37.0 33.0 37.0 98-99 34.88688493480532 37.0 33.0 37.0 33.0 37.0 100 34.73643984563663 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 0.0 18 6.0 19 23.0 20 77.0 21 245.0 22 993.0 23 2799.0 24 6334.0 25 12325.0 26 21655.0 27 34966.0 28 52315.0 29 74827.0 30 104064.0 31 141936.0 32 192356.0 33 265341.0 34 377960.0 35 579411.0 36 1106694.0 37 2878226.0 38 3505212.0 39 153996.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.136881201468626 21.125798077937006 14.737126960428665 23.000193760165708 2 14.402472486314515 20.895419451432605 43.3705319994142 21.331576062838682 3 17.388821837388665 27.79130255599384 31.944308939670474 22.875566666947023 4 11.722509819423536 18.683555934968922 39.00317081171097 30.590763433896566 5 12.058072106731867 38.24775454303362 36.21910811257768 13.475065237656834 6 27.763313228749126 38.742626102569226 18.891359864908296 14.602700803773349 7 24.363669356284287 34.02743193400254 23.52417181213868 18.084726897574487 8 23.493722824435682 36.696229363182134 21.96595120861939 17.844096603762793 9 25.009099260473505 16.577296614444307 22.025961120557895 36.38764300452429 10-11 23.554606702259704 27.160273173866262 28.97091004056311 20.314210083310922 12-13 24.734512406681837 24.78552206729017 29.246930128435732 21.233035397592257 14-15 21.765315406335862 26.134059073387245 27.698653519715904 24.40197200056099 16-17 20.39987438710094 29.58166425947159 28.249014220498793 21.769447132928686 18-19 20.20992535347289 27.54149020970037 31.341679911671466 20.906904525155277 20-21 21.21194630291056 26.806463761277488 31.398933998133614 20.582655937678336 22-23 20.998845937340356 27.154146463384944 31.11163872533987 20.735368873934835 24-25 20.630789820113378 27.567543661429955 31.454056837228766 20.347609681227897 26-27 20.541541827635005 27.90010295800105 31.458725669542698 20.099629544821244 28-29 20.12493668660024 27.632751154651547 31.63969868272841 20.602613476019805 30-31 20.479955644875396 28.082053179374338 31.16024054271464 20.277750633035623 32-33 20.992979040538703 27.673388688875526 31.157600479643143 20.176031790942623 34-35 20.397817077944 27.808529496253026 31.262722365283253 20.530931060519723 36-37 20.25707985787175 28.247403109563958 30.96125760061884 20.53425943194545 38-39 20.397608410433477 27.618303856408765 31.131307792426792 20.85277994073097 40-41 20.546270449495466 27.64129269041518 31.179368001636863 20.63306885845249 42-43 20.904196239738663 27.592724695970517 30.773536840216977 20.729542224073843 44-45 20.575524809729657 28.368934378113043 30.06252653101351 20.993014281143786 46-47 21.355169594364508 27.86691317182714 29.062585266810625 21.715331966997727 48-49 21.24116262191254 28.006339407812725 28.94685201629207 21.80564595398267 50-51 20.860847561309058 28.278298288761615 29.095263243231557 21.76559090669777 52-53 21.067556337431604 28.482767436373972 29.153208604941305 21.296467621253115 54-55 21.030654517367672 28.5106621396685 28.62830908984002 21.830374253123804 56-57 21.650182791078976 28.926700752321967 27.92352560450603 21.499590852093032 58-59 20.881153043805188 29.36941543086069 28.692105811347542 21.057325713986582 60-61 21.33201910042605 29.71604741159155 27.77203807374327 21.179895414239134 62-63 21.081308087466326 29.965079797669684 27.641190406220296 21.312421708643694 64-65 21.16400463834586 29.68030379051948 27.747757773904315 21.407933797230342 66-67 21.362790480300482 29.30708352817803 27.671050865875703 21.65907512564579 68-69 21.409955094000562 28.87414558016464 27.971793451785366 21.74410587404943 70-71 21.561109609709142 28.292978197943704 28.062442174777917 22.083470017569237 72-73 21.597794108613524 28.3513499474485 28.20635105494921 21.84450488898877 74-75 21.50862096628803 28.5253500517223 28.051805146091425 21.914223835898248 76-77 21.61705838760569 28.421497998517857 27.808393713413814 22.153049900462634 78-79 21.74565773083823 28.323920474493452 27.94551994209506 21.98490185257326 80-81 21.561910451827657 28.2995569430706 28.08305297700017 22.05547962810158 82-83 21.98147835008521 27.91520583581667 28.227198098557555 21.876117715540566 84-85 22.205557698074667 27.928057186445304 27.861805520299466 22.004579595180562 86-87 21.748477889522043 28.093065323648858 27.98961838995963 22.168838396869468 88-89 22.060581994805165 27.75905650339932 27.945827495461618 22.2345340063339 90-91 22.123275682392098 27.707709619418313 28.10534510808936 22.06366959010023 92-93 22.210701143006354 27.733526553503374 28.013559489534117 22.04221281395615 94-95 21.857343892123005 27.728981472044794 28.157430046596872 22.25624458923533 96-97 22.03849014573165 27.763053176367876 28.25231156824643 21.946145109654047 98-99 23.179452229247506 29.782575364175457 28.23738709741823 18.8005853091588 100 29.785630969933923 40.64825635200561 29.566112678060463 0.0 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2805.0 1 2852.5 2 5472.5 3 8435.5 4 12499.5 5 23424.0 6 31871.0 7 35139.5 8 34985.5 9 31265.5 10 26940.0 11 23072.0 12 24936.0 13 34863.0 14 58815.5 15 92719.0 16 120694.5 17 137453.5 18 141178.0 19 132204.5 20 116316.0 21 98132.0 22 83718.5 23 79300.0 24 85169.5 25 98078.0 26 117187.5 27 136995.0 28 154470.5 29 176648.0 30 197308.5 31 213926.0 32 234973.5 33 258451.5 34 281411.5 35 305719.0 36 331503.0 37 353400.0 38 364465.0 39 368917.0 40 375277.0 41 380999.5 42 388800.5 43 402842.5 44 420270.0 45 442114.5 46 462240.5 47 472501.0 48 464489.5 49 443705.0 50 423254.5 51 396963.0 52 364199.0 53 333855.0 54 300548.5 55 263879.0 56 226049.5 57 185683.5 58 151419.5 59 122235.5 60 94958.0 61 70494.5 62 51326.0 63 37779.0 64 26348.5 65 17870.0 66 12824.0 67 9861.0 68 8069.0 69 6217.5 70 4541.5 71 3305.0 72 2239.5 73 1524.5 74 1106.5 75 779.0 76 529.0 77 324.5 78 189.5 79 126.5 80 99.0 81 78.5 82 64.0 83 46.0 84 28.5 85 16.5 86 11.5 87 7.5 88 3.5 89 1.5 90 1.0 91 1.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 3.153989765513477E-5 2 4.3104526795350847E-4 3 2.1026598436756514E-5 4 2.1026598436756514E-5 5 1.0513299218378257E-5 6 1.0513299218378257E-5 7 1.0513299218378257E-5 8 0.0 9 0.0 10-11 0.0017241810718140339 12-13 0.008605135410242604 14-15 0.0 16-17 0.0 18-19 0.0 20-21 5.25683392352684E-6 22-23 5.2574488586919715E-6 24-25 0.0 26-27 0.0 28-29 2.106715571961954E-5 30-31 2.1117461072996146E-5 32-33 1.5910318414263115E-5 34-35 0.00576728190564652 36-37 0.046969100054724676 38-39 0.15278636893682462 40-41 0.18120278595565495 42-43 0.055651749625883845 44-45 0.004841409186471648 46-47 5.794304060045678E-6 48-49 1.1796440388723383E-5 50-51 1.1979308141047968E-5 52-53 6.072561277608597E-6 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.015390758151766928 64-65 0.10660190202486158 66-67 0.23191483835731408 68-69 0.25716281795203566 70-71 0.11933926325423763 72-73 0.0076940771697980095 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 190.0 20-21 862.0 22-23 2020.0 24-25 4214.0 26-27 7719.0 28-29 16445.0 30-31 40334.0 32-33 52236.0 34-35 69316.0 36-37 95726.0 38-39 116097.0 40-41 120895.0 42-43 144695.0 44-45 170877.0 46-47 157821.0 48-49 135026.0 50-51 115369.0 52-53 111458.0 54-55 121452.0 56-57 126563.0 58-59 129430.0 60-61 126411.0 62-63 129019.0 64-65 140861.0 66-67 154318.0 68-69 124832.0 70-71 111671.0 72-73 104720.0 74-75 102905.0 76-77 98929.0 78-79 103622.0 80-81 107948.0 82-83 99671.0 84-85 108739.0 86-87 116749.0 88-89 122176.0 90-91 121205.0 92-93 122594.0 94-95 125927.0 96-97 263490.0 98-99 1718743.0 100-101 3668487.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 78.62030449289415 #Duplication Level Percentage of deduplicated Percentage of total 1 87.98972471865277 69.17778949626414 2 7.225583356748089 11.361551272926459 3 2.1535795128535753 5.079452311506202 4 0.9742176863643364 3.0637316457730788 5 0.5285362018629716 2.0776838562992297 6 0.32950456477194523 1.5543449528501336 7 0.21190409978375174 1.166197539380383 8 0.13655011636130454 0.8588489381492712 9 0.10335140581928808 0.731296709575299 >10 0.34128864052342794 4.0171661216155075 >50 0.004017874996223734 0.2127874950066908 >100 0.0013167171416687414 0.19841929412131531 >500 9.109378848075659E-5 0.046145997335119246 >1k 3.3401033217503686E-4 0.4545843691971573 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10-11 0.0 0.0 0.0 1.0513299218378257E-5 0.0 12-13 0.0 0.0 0.0 1.0513299218378257E-5 0.0 14-15 0.0 0.0 0.0 1.0513299218378257E-5 0.0 16-17 0.0 0.0 0.0 2.1026598436756514E-5 0.0 18-19 0.0 0.0 0.0 5.2566496091891285E-5 0.0 20-21 0.0 0.0 0.0 6.307979531026954E-5 0.0 22-23 0.0 0.0 0.0 9.461969296540431E-5 0.0 24-25 0.0 0.0 0.0 1.7346943710324123E-4 0.0 26-27 0.0 0.0 0.0 3.25912275769726E-4 0.0 28-29 0.0 0.0 0.0 0.0010197900241826908 5.2566496091891285E-6 30-31 0.0 0.0 0.0 0.0028543607377896968 1.0513299218378257E-5 32-33 0.0 0.0 0.0 0.007085963673186944 1.0513299218378257E-5 34-35 0.0 0.0 0.0 0.012200683742927966 1.0513299218378257E-5 36-37 0.0 0.0 0.0 0.019354983861034368 1.0513299218378257E-5 38-39 0.0 0.0 0.0 0.030414974638768296 1.0513299218378257E-5 40-41 0.0 0.0 0.0 0.04227923280670816 1.0513299218378257E-5 42-43 0.0 0.0 0.0 0.05315524084812047 1.0513299218378257E-5 44-45 0.0 0.0 0.0 0.06547157088245059 1.0513299218378257E-5 46-47 0.0 0.0 0.0 0.07805073339724017 1.0513299218378257E-5 48-49 0.0 0.0 0.0 0.09018833734485787 1.0513299218378257E-5 50-51 0.0 0.0 0.0 0.10233645459169395 1.0513299218378257E-5 52-53 0.0 0.0 0.0 0.11374864089324355 1.0513299218378257E-5 54-55 0.0 0.0 0.0 0.12376255839874883 1.0513299218378257E-5 56-57 0.0 0.0 0.0 0.13136367373363633 1.0513299218378257E-5 58-59 0.0 0.0 0.0 0.13892799252125948 1.0513299218378257E-5 60-61 0.0 0.0 0.0 0.14656590440341127 1.0513299218378257E-5 62-63 0.0 0.0 0.0 0.15374123111995444 1.0513299218378257E-5 64-65 0.0 0.0 0.0 0.1611057972224284 1.0513299218378257E-5 66-67 0.0 0.0 0.0 0.16963208288853315 1.0513299218378257E-5 68-69 0.0 0.0 0.0 0.1773593578140412 1.0513299218378257E-5 70-71 0.0 0.0 0.0 0.18388285997904488 1.0513299218378257E-5 72-73 0.0 0.0 0.0 0.18911848298979728 1.0513299218378257E-5 74-75 0.0 0.0 0.0 0.19381792774041234 1.0513299218378257E-5 76-77 0.0 0.0 0.0 0.19778144154574095 1.0513299218378257E-5 78-79 0.0 0.0 0.0 0.2001206506218301 1.0513299218378257E-5 80-81 0.0 0.0 0.0 0.2009354313112544 1.0513299218378257E-5 82-83 0.0 0.0 0.0 0.20146109627217335 1.0513299218378257E-5 84-85 0.0 0.0 0.0 0.2017712385991155 1.0513299218378257E-5 86-87 0.0 0.0 0.0 0.20194470803621872 1.0513299218378257E-5 88 0.0 0.0 0.0 0.20197099128426468 1.0513299218378257E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 13595 0.0 45.552547 1 GGTATCA 26965 0.0 43.36625 1 TATACAC 16335 0.0 39.62048 3 TTATACA 18420 0.0 34.51689 2 GTATCAA 46500 0.0 32.800323 1 TACACAT 25205 0.0 25.99001 5 ATACACA 25765 0.0 25.88241 4 TATCAAC 58980 0.0 25.793201 2 ATCAACG 58960 0.0 25.695114 3 TCAACGC 59455 0.0 25.481188 4 ACACATC 24710 0.0 25.447575 6 CAACGCA 59670 0.0 25.38332 5 AACGCAG 59865 0.0 25.375954 6 ACATCTC 26705 0.0 23.679916 8 CACATCT 26675 0.0 23.67706 7 ACGCAGA 65715 0.0 23.06396 7 CGCAGAG 65980 0.0 22.977285 8 CATCTCC 29555 0.0 21.276695 9 GCAGAGT 72430 0.0 20.898546 9 GAGTACT 49045 0.0 19.892221 12-13 >>END_MODULE