##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138759_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7907312 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.72182455934457 33.0 33.0 33.0 33.0 33.0 2 32.64928170280874 33.0 33.0 33.0 33.0 33.0 3 32.72139533636715 33.0 33.0 33.0 33.0 33.0 4 36.702548350185246 37.0 37.0 37.0 37.0 37.0 5 36.70926921816162 37.0 37.0 37.0 37.0 37.0 6 36.706357103399995 37.0 37.0 37.0 37.0 37.0 7 36.69215973772124 37.0 37.0 37.0 37.0 37.0 8 36.687614577494855 37.0 37.0 37.0 37.0 37.0 9 36.68013074480936 37.0 37.0 37.0 37.0 37.0 10-11 36.68906633505799 37.0 37.0 37.0 37.0 37.0 12-13 36.68650699504458 37.0 37.0 37.0 37.0 37.0 14-15 38.89858443678459 40.0 38.5 40.0 37.0 40.0 16-17 38.83400427351292 40.0 37.0 40.0 37.0 40.0 18-19 38.8923822659331 40.0 38.5 40.0 37.0 40.0 20-21 38.912676961003164 40.0 40.0 40.0 37.0 40.0 22-23 38.91832210984076 40.0 40.0 40.0 37.0 40.0 24-25 38.90993654459068 40.0 38.5 40.0 37.0 40.0 26-27 38.826222816534596 40.0 37.0 40.0 37.0 40.0 28-29 38.72129664259606 40.0 37.0 40.0 37.0 40.0 30-31 38.55308870432305 40.0 37.0 40.0 37.0 40.0 32-33 38.441799073612245 40.0 37.0 40.0 37.0 40.0 34-35 38.40907411995927 40.0 37.0 40.0 37.0 40.0 36-37 38.38017599030334 40.0 37.0 40.0 37.0 40.0 38-39 38.33524774597262 40.0 37.0 40.0 37.0 40.0 40-41 38.30575114718418 40.0 37.0 40.0 37.0 40.0 42-43 38.27256171858333 40.0 37.0 40.0 37.0 40.0 44-45 38.17435142466795 40.0 37.0 40.0 37.0 40.0 46-47 37.78758853613461 40.0 37.0 40.0 33.0 40.0 48-49 37.96657922965563 40.0 37.0 40.0 33.0 40.0 50-51 37.980330793340116 40.0 37.0 40.0 33.0 40.0 52-53 37.944641436377694 40.0 37.0 40.0 33.0 40.0 54-55 37.84967876385722 40.0 37.0 40.0 33.0 40.0 56-57 37.66541017712351 40.0 37.0 40.0 33.0 40.0 58-59 37.48903225350222 40.0 37.0 40.0 33.0 40.0 60-61 37.31040770766086 37.0 37.0 40.0 33.0 40.0 62-63 37.16378248131271 37.0 37.0 40.0 33.0 40.0 64-65 36.98195900293989 37.0 37.0 40.0 33.0 40.0 66-67 36.77434007599899 37.0 37.0 40.0 33.0 40.0 68-69 36.57134017634094 37.0 37.0 40.0 33.0 40.0 70-71 36.354809174226745 37.0 37.0 38.5 33.0 40.0 72-73 36.08326134031325 37.0 37.0 37.0 33.0 40.0 74-75 35.754279051474896 37.0 35.0 37.0 33.0 40.0 76-77 33.56693220891262 35.0 33.0 37.0 27.0 37.0 78-79 35.25736193755175 37.0 33.0 37.0 33.0 37.0 80-81 35.47464593340867 37.0 33.0 37.0 33.0 37.0 82-83 35.31112419962315 37.0 33.0 37.0 33.0 37.0 84-85 35.16366392234101 37.0 33.0 37.0 33.0 37.0 86-87 35.072599859902155 37.0 33.0 37.0 33.0 37.0 88-89 34.9069373821082 37.0 33.0 37.0 33.0 37.0 90-91 34.85170321419129 37.0 33.0 37.0 33.0 37.0 92-93 34.89878695176581 37.0 33.0 37.0 33.0 37.0 94-95 34.88840554676594 37.0 33.0 37.0 33.0 37.0 96-97 34.883414366295845 37.0 33.0 37.0 33.0 37.0 98-99 34.89041586846012 37.0 33.0 37.0 33.0 37.0 100 34.843424465654486 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 0.0 13 0.0 14 1.0 15 0.0 16 1.0 17 4.0 18 7.0 19 23.0 20 58.0 21 148.0 22 561.0 23 1683.0 24 4058.0 25 8363.0 26 15037.0 27 25019.0 28 38316.0 29 54828.0 30 76817.0 31 105250.0 32 144270.0 33 202358.0 34 293372.0 35 459223.0 36 919135.0 37 2559574.0 38 2877360.0 39 121845.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.772149159720456 20.26522550212721 14.414929276192446 22.54769606195989 2 15.028067205487202 21.033780175233655 42.10920556535877 21.828947053920373 3 18.00775712698214 27.069259592612354 30.911122861140246 24.011860419265265 4 12.230406071142534 18.00976792484017 39.20179418813657 30.558031815880724 5 12.737443294551914 38.056031451407804 35.4027773544704 13.80374789956988 6 28.717405630663983 38.169483448794026 18.88556524096883 14.227545679573165 7 25.353182643252552 33.846272139795694 23.433237923739185 17.367307293212573 8 24.259182419914936 35.921718520999114 21.47092734812125 18.3481717109647 9 25.855085249587372 16.33781698987178 22.104543504106516 35.70255425643433 10-11 24.04615324592037 26.943501156132854 28.658259244019945 20.352086353926833 12-13 25.150523342516824 24.88322069931365 29.152556585457102 20.813699372712428 14-15 22.209260239130565 25.9292348651476 28.028216162458243 23.83328873326359 16-17 20.559698415845993 28.841033463710552 28.6580382815298 21.941229838913653 18-19 20.26711479197988 27.395694010809237 31.80333595032041 20.53385524689047 20-21 21.45271587308222 26.57683051317218 31.830235254740895 20.140218359004706 22-23 21.188558489567527 26.541452483596068 31.575175467216386 20.694813559620023 24-25 20.64558625442213 26.7272967419015 31.88112935876582 20.745987644910542 26-27 20.643359204870755 27.025550764280087 31.649265894440028 20.681824136409126 28-29 20.416953890422015 27.383684829341586 31.602213275956988 20.59714800427941 30-31 20.867859402039727 27.2364994109352 31.423203790273256 20.47243739675182 32-33 20.567489317576502 27.44015151732293 31.23991909479419 20.75244007030638 34-35 20.604664738252744 27.628688104426097 31.14822692294798 20.61842023437318 36-37 20.802941478722524 27.515778260668405 30.973659237960156 20.70762102264892 38-39 20.69267298435376 27.723821266378163 30.8572752503609 20.726230498907178 40-41 20.995213874379296 27.692643596007265 30.58220370651406 20.729938823099378 42-43 21.010045496401016 27.951179112483022 30.019164446954292 21.019610944161666 44-45 21.141480580521073 28.31324095314183 29.437123174349782 21.10815529198732 46-47 21.28915354114019 28.263910426880617 28.793047905893786 21.653888126085405 48-49 21.55933742419106 28.468976964134836 28.3763030013798 21.59538261029431 50-51 21.516115156585233 28.54708924519473 28.125386275946706 21.811409322273335 52-53 21.544911412980703 28.576853118533062 27.86780904560377 22.010426422882464 54-55 21.6081989044882 28.542889828203926 27.91091996211565 21.93799130519222 56-57 21.766126343437705 28.53487196068627 27.7510623438254 21.94793935205062 58-59 21.663398467089248 28.51232338610315 27.951217177450626 21.873060969356974 60-61 21.761436245434336 28.45055117742386 27.894633352191285 21.89337922495052 62-63 21.827862448553294 28.386703504399357 27.738714765073198 22.046719281974152 64-65 21.708328646946352 28.44180099331672 27.739338716265415 22.110531643471518 66-67 21.865184244623077 28.382941598981127 27.596963727282365 22.154910429113432 68-69 21.907307448930144 28.326420399420797 27.59558165359048 22.170690498058583 70-71 21.901792215223935 27.941862050812034 27.728396461686227 22.427949272277807 72-73 21.99434256309728 27.973034060279346 27.838666993383974 22.193956383239403 74-75 21.97569647168533 28.092906752041692 27.636045160785798 22.295351615487185 76-77 21.98187707134868 27.887166227103766 27.513734188005483 22.617222513542067 78-79 22.113278646374958 27.792097303263695 27.52545334549569 22.569170704865655 80-81 22.00367052069955 27.785151966786646 27.662596297153456 22.548581215360343 82-83 22.345313340908486 27.562264250289974 27.772718673545622 22.319703735255914 84-85 22.619947583660238 27.570005273872244 27.48509687385671 22.324950268610806 86-87 22.096068131585092 27.78545300475102 27.627710948916317 22.49076791474757 88-89 22.37007032344804 27.48849704362066 27.53954327356815 22.60188935936315 90-91 22.605745785877986 27.304883662366958 27.584924686341907 22.504445865413153 92-93 22.5111456958562 27.3790697081367 27.634894981175297 22.474889614831806 94-95 22.28680487568232 27.408481480088078 27.774978923733286 22.529734720496315 96-97 22.49003602331084 27.463882033315766 27.765853502111792 22.280228441261603 98-99 23.57440665004324 29.40367346612735 27.913913437942362 19.108006445887046 100 22.695586665053394 29.848631911208695 21.732943380262533 25.72283804347538 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2780.0 1 2791.5 2 5317.5 3 8181.5 4 12125.5 5 22104.0 6 29633.5 7 32716.5 8 32810.0 9 29651.5 10 25506.5 11 21732.0 12 23966.0 13 33923.0 14 56766.5 15 88180.0 16 112994.5 17 126273.0 18 127252.0 19 116808.0 20 99569.5 21 80261.0 22 65166.5 23 58955.0 24 60525.0 25 69126.0 26 82698.0 27 96225.0 28 107298.0 29 120926.0 30 134524.5 31 146450.5 32 162084.0 33 178826.5 34 197230.5 35 216672.5 36 236287.5 37 256833.0 38 268173.0 39 274280.5 40 285723.5 41 292603.0 42 296703.0 43 309788.0 44 326365.0 45 339676.5 46 347248.5 47 350156.0 48 349360.5 49 340324.5 50 325200.5 51 310059.0 52 293705.5 53 274234.5 54 249460.5 55 217860.5 56 187751.0 57 159202.5 58 133229.0 59 112938.5 60 91648.5 61 70007.5 62 52117.0 63 37928.0 64 26896.5 65 19133.5 66 14381.5 67 11152.5 68 8438.0 69 6331.5 70 4665.0 71 3251.0 72 2346.5 73 1718.5 74 1243.0 75 865.0 76 568.5 77 364.5 78 227.5 79 140.0 80 90.5 81 63.0 82 45.5 83 30.0 84 20.0 85 16.0 86 13.0 87 8.5 88 5.0 89 3.5 90 2.0 91 2.0 92 3.0 93 3.0 94 3.0 95 2.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 3.793956783291212E-5 2 5.18507427049799E-4 3 3.793956783291212E-5 4 3.793956783291212E-5 5 3.793956783291212E-5 6 3.793956783291212E-5 7 1.2646522610970706E-5 8 1.2646522610970706E-5 9 1.2646522610970706E-5 10-11 0.0016756642459536187 12-13 0.009244608028619587 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.005936903510731593 36-37 0.047544306347415737 38-39 0.1519505967079614 40-41 0.1797703349431936 42-43 0.05549351984942057 44-45 0.00482797672862016 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.014866019451535971 64-65 0.10262264692509418 66-67 0.22583973893435874 68-69 0.25112983690374835 70-71 0.11330673001026675 72-73 0.007448599761252776 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 157.0 20-21 700.0 22-23 1591.0 24-25 3065.0 26-27 5221.0 28-29 11791.0 30-31 27160.0 32-33 32425.0 34-35 41102.0 36-37 44884.0 38-39 49792.0 40-41 66303.0 42-43 80405.0 44-45 101318.0 46-47 97636.0 48-49 78805.0 50-51 64490.0 52-53 60435.0 54-55 73941.0 56-57 68795.0 58-59 66275.0 60-61 72058.0 62-63 74268.0 64-65 86745.0 66-67 103543.0 68-69 98308.0 70-71 96496.0 72-73 91466.0 74-75 92202.0 76-77 87165.0 78-79 89203.0 80-81 91209.0 82-83 92479.0 84-85 99496.0 86-87 104740.0 88-89 108821.0 90-91 105784.0 92-93 104077.0 94-95 117542.0 96-97 246313.0 98-99 440014.0 100-101 4529092.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 76.19530442190326 #Duplication Level Percentage of deduplicated Percentage of total 1 86.20562705062099 65.68463996003125 2 8.021578635526534 12.224132521563593 3 2.612436815251649 5.971662552632607 4 1.2172347909204486 3.7099030178846135 5 0.6567010397742873 2.501876781989111 6 0.38467766613107807 1.7586379125098854 7 0.2578654002140352 1.375369286842903 8 0.16224166411140833 0.9889642389507949 9 0.11121578650396687 0.762670863827204 >10 0.36474066731553656 4.016426385379899 >50 0.0033303464231104053 0.16905858960394066 >100 0.0017792254954763248 0.25734334710493695 >500 2.2836468572953291E-4 0.12038119120340111 >1k 3.4254702578599054E-4 0.45893335047588374 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 5.0586090443882825E-5 2 0.0 0.0 0.0 0.0 7.587913566582423E-5 3 0.0 0.0 0.0 0.0 7.587913566582423E-5 4 0.0 0.0 0.0 0.0 1.0117218088776565E-4 5 0.0 0.0 0.0 0.0 1.0117218088776565E-4 6 0.0 0.0 0.0 0.0 1.7705131655358988E-4 7 0.0 0.0 0.0 0.0 1.896978391645606E-4 8 0.0 0.0 0.0 0.0 2.7822349744135555E-4 9 0.0 0.0 0.0 0.0 3.5410263310717977E-4 10-11 0.0 0.0 0.0 0.0 3.5410263310717977E-4 12-13 0.0 0.0 0.0 6.323261305485353E-6 3.667491557181505E-4 14-15 0.0 0.0 0.0 1.2646522610970706E-5 5.121841657443136E-4 16-17 1.2646522610970706E-5 0.0 0.0 2.5293045221941412E-5 6.196796079375646E-4 18-19 1.2646522610970706E-5 0.0 0.0 8.852565827679495E-5 7.018820049088742E-4 20-21 1.2646522610970706E-5 0.0 0.0 2.466071909139288E-4 7.33498311436301E-4 22-23 1.2646522610970706E-5 0.0 0.0 8.093774471021252E-4 8.536402762405228E-4 24-25 1.2646522610970706E-5 0.0 0.0 0.002971932813578116 0.0010180450701831418 26-27 1.2646522610970706E-5 0.0 0.0 0.0077965811896634415 0.0010370148540995979 28-29 1.2646522610970706E-5 0.0 0.0 0.029833146839279897 0.0010433381154050833 30-31 1.2646522610970706E-5 0.0 0.0 0.04046887235510626 0.0010749544219325101 32-33 1.2646522610970706E-5 0.0 0.0 0.043636826269154425 0.0012014196480422171 34-35 1.2646522610970706E-5 0.0 0.0 0.04698815476106166 0.001289945306319012 36-37 2.5293045221941412E-5 0.0 0.0 0.05166104486581534 0.0013025918289299827 38-39 2.5293045221941412E-5 0.0 0.0 0.063681564607543 0.001340531396762895 40-41 2.5293045221941412E-5 0.0 0.0 0.0764545524446234 0.0013658244419848364 42-43 3.161630652742676E-5 0.0 0.0 0.08413099166948262 0.0014037640098177484 44-45 3.793956783291212E-5 0.0 0.0 0.0932933973011309 0.001448026838956146 46-47 3.793956783291212E-5 0.0 0.0 0.10256962163627792 0.0014922896680945434 48-49 3.793956783291212E-5 0.0 0.0 0.11352151021737855 0.0015681688037603677 50-51 3.793956783291212E-5 0.0 0.0 0.12461883380850536 0.0015681688037603677 52-53 3.793956783291212E-5 0.0 0.0 0.15564707703452196 0.0016440479394261918 54-55 3.793956783291212E-5 0.0 0.0 0.19870848652487721 0.0017325735977029868 56-57 3.793956783291212E-5 0.0 0.0 0.2482765318985769 0.001751543381619443 58-59 3.793956783291212E-5 0.0 0.0 0.2786408326875176 0.0017641899042304134 60-61 3.793956783291212E-5 0.0 0.0 0.30113899641243447 0.0017705131655358988 62-63 3.793956783291212E-5 0.0 0.0 0.3237573021021556 0.0018463923012017232 64-65 3.793956783291212E-5 0.0 0.0 0.33232532117108826 0.0018463923012017232 66-67 3.793956783291212E-5 0.0 0.0 0.3418734457423711 0.0018716853464236646 68-69 3.793956783291212E-5 0.0 0.0 0.3524079990773097 0.001896978391645606 70-71 3.793956783291212E-5 0.0 0.0 0.3603183989704719 0.001947564482089489 72-73 3.793956783291212E-5 0.0 0.0 0.36587654565799355 0.0020740297081991957 74-75 3.793956783291212E-5 0.0 0.0 0.3707138405566898 0.0020740297081991957 76-77 3.793956783291212E-5 0.0 0.0 0.3751970328222789 0.0020740297081991957 78-79 3.793956783291212E-5 0.0 0.0 0.37780853974144435 0.0020740297081991957 80-81 3.793956783291212E-5 0.0 0.0 0.3786558567563794 0.002143585582559535 82-83 3.793956783291212E-5 0.0 0.0 0.3792692131030115 0.002238434502141815 84-85 3.793956783291212E-5 0.0 0.0 0.37950949703261994 0.0022510810247527856 86-87 3.793956783291212E-5 0.0 0.0 0.37971816465570096 0.0022510810247527856 88 3.793956783291212E-5 0.0 0.0 0.37973713443961743 0.0022510810247527856 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 22655 0.0 45.41832 1 GTATCAA 39585 0.0 35.288754 1 TATCAAC 50265 0.0 27.561543 2 ATCAACG 50080 0.0 27.523643 3 AACGCAG 50435 0.0 27.392057 6 CAACGCA 50620 0.0 27.239193 5 TCAACGC 51105 0.0 27.052145 4 ACGCAGA 56300 0.0 24.488262 7 CGCAGAG 56650 0.0 24.322433 8 GCAGAGT 62315 0.0 21.998997 9 GTACATG 34070 0.0 20.730047 1 ACATGGG 32910 0.0 20.69785 3 TACATGG 33585 0.0 20.624996 2 GAGTACT 44200 0.0 20.404373 12-13 ACGGTAC 955 0.0 19.39386 3 CAGAGTA 61745 0.0 19.355146 10-11 GGTTCAC 3520 0.0 18.945545 6 AGAGTAC 60100 0.0 18.56976 10-11 AGTACTT 46525 0.0 18.407063 12-13 GTACTTT 49140 0.0 18.306026 14-15 >>END_MODULE