##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138758_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6316226 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.70385464357989 33.0 33.0 33.0 33.0 33.0 2 32.63610801766751 33.0 33.0 33.0 33.0 33.0 3 32.71356487244123 33.0 33.0 33.0 33.0 33.0 4 36.6888920694098 37.0 37.0 37.0 37.0 37.0 5 36.69123888220592 37.0 37.0 37.0 37.0 37.0 6 36.683809762348595 37.0 37.0 37.0 37.0 37.0 7 36.67082653470601 37.0 37.0 37.0 37.0 37.0 8 36.66056344405663 37.0 37.0 37.0 37.0 37.0 9 36.660810585308376 37.0 37.0 37.0 37.0 37.0 10-11 36.665470409070224 37.0 37.0 37.0 37.0 37.0 12-13 36.66522144711098 37.0 37.0 37.0 37.0 37.0 14-15 38.87477490514114 40.0 37.0 40.0 37.0 40.0 16-17 38.80800932392223 40.0 37.0 40.0 37.0 40.0 18-19 38.844970794268605 40.0 37.0 40.0 37.0 40.0 20-21 38.85888195638866 40.0 37.0 40.0 37.0 40.0 22-23 38.859638034179326 40.0 37.0 40.0 37.0 40.0 24-25 38.85479930598942 40.0 37.0 40.0 37.0 40.0 26-27 38.77502515867235 40.0 37.0 40.0 37.0 40.0 28-29 38.67441963217849 40.0 37.0 40.0 37.0 40.0 30-31 38.529047476141045 40.0 37.0 40.0 37.0 40.0 32-33 38.42471388110883 40.0 37.0 40.0 37.0 40.0 34-35 38.39511103047545 40.0 37.0 40.0 37.0 40.0 36-37 38.370434925488425 40.0 37.0 40.0 37.0 40.0 38-39 38.327202138049294 40.0 37.0 40.0 37.0 40.0 40-41 38.29867685989092 40.0 37.0 40.0 37.0 40.0 42-43 38.270396741861255 40.0 37.0 40.0 37.0 40.0 44-45 38.17497765810482 40.0 37.0 40.0 37.0 40.0 46-47 37.79556769279065 40.0 37.0 40.0 33.0 40.0 48-49 37.96386091570846 40.0 37.0 40.0 33.0 40.0 50-51 37.97471412668132 40.0 37.0 40.0 33.0 40.0 52-53 37.93605957138803 40.0 37.0 40.0 33.0 40.0 54-55 37.83564313807064 40.0 37.0 40.0 33.0 40.0 56-57 37.65862306258714 40.0 37.0 40.0 33.0 40.0 58-59 37.47578656675479 40.0 37.0 40.0 33.0 40.0 60-61 37.29703694280832 37.0 37.0 40.0 33.0 40.0 62-63 37.15080576784154 37.0 37.0 40.0 33.0 40.0 64-65 36.963868955652515 37.0 37.0 40.0 33.0 40.0 66-67 36.744516032295834 37.0 37.0 40.0 33.0 40.0 68-69 36.52975857562526 37.0 37.0 40.0 33.0 40.0 70-71 36.30426175862843 37.0 37.0 38.5 33.0 40.0 72-73 36.02658025993898 37.0 37.0 37.0 33.0 40.0 74-75 35.69576963831924 37.0 35.0 37.0 33.0 40.0 76-77 33.5211301307601 35.0 33.0 37.0 27.0 37.0 78-79 35.20565534799675 37.0 33.0 37.0 33.0 37.0 80-81 35.421330925669636 37.0 33.0 37.0 33.0 37.0 82-83 35.253882211322534 37.0 33.0 37.0 33.0 37.0 84-85 35.10409379647426 37.0 33.0 37.0 33.0 37.0 86-87 35.01107634052215 37.0 33.0 37.0 33.0 37.0 88-89 34.833595879419676 37.0 33.0 37.0 33.0 37.0 90-91 34.778516955033275 37.0 33.0 37.0 33.0 37.0 92-93 34.82588555964834 37.0 33.0 37.0 33.0 37.0 94-95 34.81031686503121 37.0 33.0 37.0 33.0 37.0 96-97 34.80843192557422 37.0 33.0 37.0 33.0 37.0 98-99 34.813027871825966 37.0 33.0 37.0 33.0 37.0 100 34.76312549902892 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 1.0 18 3.0 19 6.0 20 30.0 21 129.0 22 460.0 23 1406.0 24 3595.0 25 7133.0 26 13038.0 27 21192.0 28 32704.0 29 46818.0 30 65424.0 31 89173.0 32 120423.0 33 168052.0 34 241618.0 35 376969.0 36 743002.0 37 2025306.0 38 2280131.0 39 79612.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.172531852491005 20.085715755851 14.608852597872938 23.132899793785054 2 14.871010157222821 20.531775855558607 42.43518447419689 22.162029513021686 3 17.874439578317812 26.454594879917217 30.886830205252313 24.78413533651266 4 12.292577877992333 17.75200887365335 39.16585631989736 30.789556928456964 5 12.926136588526123 37.72600917066615 35.73067208171462 13.617182159093105 6 29.2925395639738 38.04111822471204 18.73154950440342 13.93479270691074 7 25.991470222883095 33.21399519269893 23.398592767263235 17.395941817154736 8 24.253438683163015 36.352562432059905 21.222609830617206 18.171389054159874 9 25.69448908256291 16.82862519485528 21.856152708911935 35.62073301366987 10-11 24.067571171598793 26.915741303747055 28.84821557139737 20.168471953256788 12-13 25.109562983881574 24.47403157184139 29.106073562072183 21.310331882204856 14-15 22.06378460808717 25.71910029818439 27.63726313782946 24.57985195589898 16-17 20.997499139517807 28.80044190945669 28.26938903072816 21.932669920297343 18-19 20.890615693611977 27.44314405469342 30.83889018537335 20.827350066321248 20-21 21.901448567708336 26.62982866457928 30.89909139155723 20.569631376155158 22-23 21.531890070864712 26.56959622916249 30.74350311792703 21.15501058204577 24-25 21.15136169901077 26.802607588772243 30.867056920740943 21.178973791476043 26-27 21.07189462959539 27.026585786535197 30.803365685702776 21.098153898166636 28-29 20.9709199309832 27.240043758940903 30.703931257782603 21.085105052293297 30-31 21.28758360681124 26.99253718009041 30.603072879131698 21.11680633396665 32-33 20.97448869838184 27.38008015106005 30.440400595954202 21.20503055460391 34-35 21.093531263520525 27.416499102479026 30.387972474796555 21.10199715920389 36-37 21.30221863138305 27.146583127323026 30.33687465757202 21.214323583721907 38-39 21.098307116640257 27.46914628094408 30.279984048251603 21.152562554164064 40-41 21.422333162202513 27.398847588006152 30.160167957360233 21.0186512924311 42-43 21.406251834521566 27.54425713514167 29.65922175440372 21.390269275933044 44-45 21.40874698263612 27.938948405797486 29.180155746356316 21.472148865210077 46-47 21.720868499528684 27.712142137741274 28.72122323934681 21.84576612338323 48-49 21.686723146075188 27.871079857875426 28.548044651352633 21.894152344696753 50-51 21.4804552050342 28.053500634182 28.427684545744192 22.038359615039603 52-53 21.78872632695212 28.04054908751289 28.12916599612503 22.041558589409963 54-55 21.81892334959087 27.909356167772124 28.122285299857168 22.149435182779836 56-57 21.86496778091109 28.056254542669862 28.07106874047523 22.00770893594382 58-59 21.833577412844065 28.06330646015205 28.107841694572457 21.995274432431426 60-61 21.83035096098529 28.01029426533178 28.055751030825903 22.103603742857022 62-63 21.941840821461252 27.97575210088149 28.03394898079688 22.048458096860383 64-65 21.891432045719274 28.023421673456074 27.956567736043166 22.128578544781487 66-67 22.007588086339336 28.08645662512241 27.702067489152345 22.203887799385914 68-69 21.956094474456897 28.038252161849147 27.848096175923104 22.157557187770852 70-71 22.071312079310314 27.580567796443766 27.81332818237488 22.534791941871035 72-73 22.11680049835171 27.62686482415051 27.8876804841533 22.368654193344476 74-75 21.977294300958704 27.755285899033566 27.820278790343412 22.44714100966432 76-77 22.04498417743981 27.76306968264705 27.588388698131304 22.603557441781835 78-79 22.19896419614196 27.767117615135824 27.543570971611032 22.490347217111186 80-81 22.104098910193493 27.711336754549183 27.657042893991697 22.527521441265627 82-83 22.414208554711525 27.320448530832998 27.845175091086126 22.42016782336935 84-85 22.620696142556973 27.45955483176166 27.518588221164293 22.40116080451707 86-87 22.1960944068185 27.589954454195677 27.65766199340195 22.55628914558388 88-89 22.384115823274787 27.352254976693523 27.691619817566536 22.57200938246515 90-91 22.517616092573352 27.291311122286693 27.71061141204518 22.480461373094776 92-93 22.545224214313674 27.301894910727363 27.720182428510665 22.4326984464483 94-95 22.295372991419335 27.390102393181742 27.751707592711096 22.562817022687828 96-97 22.491364706909543 27.334678820595382 27.812794233665723 22.361162238829355 98-99 23.659542081403394 29.351739293648933 27.926805489877214 19.06191313507046 100 22.68149221613811 30.01445749572751 21.67023246207644 25.633817826057943 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1754.0 1 1753.5 2 3028.5 3 4551.5 4 6492.0 5 11442.0 6 15341.5 7 17378.5 8 18340.0 9 17250.0 10 15130.0 11 13312.5 12 14594.0 13 19748.5 14 31802.5 15 48683.0 16 62394.5 17 69883.0 18 70557.5 19 65608.0 20 57812.0 21 48804.0 22 42067.5 23 40924.0 24 45016.0 25 53950.5 26 66388.0 27 78485.5 28 87495.0 29 97663.5 30 107558.0 31 115542.5 32 127403.0 33 141827.5 34 157638.5 35 173510.0 36 192870.0 37 210586.0 38 216477.5 39 220923.5 40 231582.5 41 239256.5 42 245396.5 43 254446.5 44 262454.0 45 271265.0 46 276420.0 47 278104.0 48 280672.0 49 276174.5 50 267453.5 51 258458.5 52 246311.5 53 235660.0 54 222393.5 55 202785.5 56 179360.0 57 153270.5 58 128686.0 59 107117.0 60 84763.0 61 63928.0 62 47265.0 63 34713.0 64 24921.5 65 16998.5 66 12268.5 67 9348.0 68 6933.0 69 4878.5 70 3468.5 71 2351.0 72 1618.0 73 1150.0 74 818.0 75 564.0 76 378.5 77 259.5 78 183.0 79 126.0 80 85.5 81 58.0 82 45.5 83 36.0 84 27.0 85 18.0 86 10.5 87 7.5 88 5.0 89 2.0 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 1.5832239061743515E-5 2 4.90799410914049E-4 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0015911400257052233 12-13 0.008968963428477701 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 7.941281529071522E-6 32-33 0.0 34-35 0.005920975303051919 36-37 0.04678782734277733 38-39 0.1511584557297278 40-41 0.17910373519481662 42-43 0.05475553381274037 44-45 0.004954072733151885 46-47 0.0 48-49 0.0 50-51 0.0 52-53 1.756877340270422E-5 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.015281506789830313 64-65 0.10450643155985974 66-67 0.23071666647635308 68-69 0.2566561872790892 70-71 0.11425695060700816 72-73 0.0075540628544937 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 115.0 20-21 460.0 22-23 1023.0 24-25 1854.0 26-27 3208.0 28-29 8779.0 30-31 19346.0 32-33 24857.0 34-35 33048.0 36-37 45513.0 38-39 52565.0 40-41 58339.0 42-43 71226.0 44-45 85964.0 46-47 80821.0 48-49 67657.0 50-51 56565.0 52-53 51711.0 54-55 55789.0 56-57 58085.0 58-59 57889.0 60-61 56035.0 62-63 53971.0 64-65 55996.0 66-67 64197.0 68-69 60571.0 70-71 60049.0 72-73 57928.0 74-75 57619.0 76-77 54530.0 78-79 59209.0 80-81 61475.0 82-83 61182.0 84-85 65504.0 86-87 68966.0 88-89 73447.0 90-91 71187.0 92-93 72074.0 94-95 79696.0 96-97 193237.0 98-99 363426.0 100-101 3791113.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 80.82769353061691 #Duplication Level Percentage of deduplicated Percentage of total 1 87.66568672778658 70.85815259984604 2 7.865572366008204 12.71512145285201 3 2.2993296343491902 5.5754853303312535 4 0.9528238614895667 3.0805822026055067 5 0.4711056622939226 1.903919204621574 6 0.26099071145755137 1.2657166344017179 7 0.1454117822363223 0.8227309279236785 8 0.09203679119250434 0.5951297241639297 9 0.06461917400426904 0.4700716913356798 >10 0.17855934373321136 2.0937194130601444 >50 0.0022352713340334073 0.12314000031958534 >100 0.0011894985034778466 0.17450467888098126 >500 2.561857785421661E-4 0.14267057776454842 >1k 1.8298983270476416E-4 0.17905556189336458 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 1.5832239061743515E-5 0.0 0.0 0.0 6 0.0 1.5832239061743515E-5 0.0 0.0 0.0 7 0.0 1.5832239061743515E-5 0.0 0.0 0.0 8 0.0 1.5832239061743515E-5 0.0 0.0 0.0 9 0.0 1.5832239061743515E-5 0.0 0.0 0.0 10-11 3.166447812348703E-5 4.749671718523055E-5 0.0 0.0 0.0 12-13 4.749671718523055E-5 4.749671718523055E-5 0.0 7.916119530871758E-6 6.332895624697406E-5 14-15 4.749671718523055E-5 5.5412836716102305E-5 0.0 1.5832239061743515E-5 8.707731483958934E-5 16-17 6.332895624697406E-5 6.332895624697406E-5 0.0 5.5412836716102305E-5 1.0290955390133285E-4 18-19 7.916119530871757E-5 6.332895624697406E-5 0.0 1.345740320248199E-4 1.4249015155569163E-4 20-21 7.916119530871757E-5 6.332895624697406E-5 0.0 2.3748358592615273E-4 1.4249015155569163E-4 22-23 1.4249015155569163E-4 6.332895624697406E-5 0.0 6.095412038771254E-4 1.4249015155569163E-4 24-25 2.058191078026657E-4 6.332895624697406E-5 0.0 0.002034442719434042 1.4249015155569163E-4 26-27 2.058191078026657E-4 6.332895624697406E-5 0.0 0.005470038595832385 1.6623851014830693E-4 28-29 2.3748358592615273E-4 6.332895624697406E-5 0.0 0.0182466555186594 1.899868687409222E-4 30-31 2.6914806404963976E-4 7.916119530871757E-5 0.0 0.02108062631071149 1.9790298827179395E-4 32-33 3.008125421731268E-4 8.707731483958934E-5 0.0 0.02610736221281506 2.2165134686440922E-4 34-35 3.0872866170399854E-4 1.0290955390133285E-4 0.0 0.032408593359388976 2.2165134686440922E-4 36-37 4.116382156053314E-4 1.1874179296307637E-4 0.0 0.042256246055793444 2.2165134686440922E-4 38-39 4.116382156053314E-4 1.2665791249394812E-4 0.0 0.0670416163069529 2.3748358592615273E-4 40-41 4.195543351362032E-4 1.2665791249394812E-4 0.0 0.0940355839072256 2.3748358592615273E-4 42-43 4.2747045466707493E-4 1.4249015155569163E-4 0.0 0.1107465122368959 2.3748358592615273E-4 44-45 4.2747045466707493E-4 1.7415462967917869E-4 0.0 0.13265041497881805 2.453997054570245E-4 46-47 4.2747045466707493E-4 1.7415462967917869E-4 0.0 0.15451473712308583 2.61231944518768E-4 48-49 4.353865741979467E-4 1.7415462967917869E-4 0.0 0.17410713296199343 2.8498030311138327E-4 50-51 4.670510523214337E-4 1.899868687409222E-4 0.0 0.1927575105767273 3.166447812348703E-4 52-53 4.90799410914049E-4 1.9790298827179395E-4 0.0 0.2353383175332865 3.403931398274856E-4 54-55 5.066316499757925E-4 2.61231944518768E-4 0.0 0.28448158758093833 3.4830925935835737E-4 56-57 5.303800085684077E-4 2.6914806404963976E-4 0.0 0.33597594512925916 3.8788985701271615E-4 58-59 5.462122476301513E-4 3.166447812348703E-4 0.0 0.3766806317570017 3.958059765435879E-4 60-61 5.699606062227665E-4 3.166447812348703E-4 0.0 0.39385069501946257 4.0372209607445966E-4 62-63 5.699606062227665E-4 3.166447812348703E-4 0.0 0.41535879178484114 4.4330269372881844E-4 64-65 5.699606062227665E-4 3.166447812348703E-4 0.0 0.4223724736891935 4.512188132596902E-4 66-67 5.699606062227665E-4 3.4830925935835737E-4 0.0 0.4280958281100138 4.828832913831772E-4 68-69 5.699606062227665E-4 3.4830925935835737E-4 0.0 0.43408041447535284 5.066316499757925E-4 70-71 5.699606062227665E-4 3.562253788892291E-4 0.0 0.4391546470946417 5.066316499757925E-4 72-73 5.778767257536383E-4 3.641414984201009E-4 0.0 0.4429068877522748 5.066316499757925E-4 74-75 5.8579284528451E-4 3.641414984201009E-4 0.0 0.44624749019430276 5.066316499757925E-4 76-77 5.8579284528451E-4 3.641414984201009E-4 0.0 0.44944560248477494 5.145477695066643E-4 78-79 5.8579284528451E-4 3.641414984201009E-4 0.0 0.4514404646065546 5.22463889037536E-4 80-81 6.332895624697406E-4 3.641414984201009E-4 0.0 0.4522874893963579 5.382961280992795E-4 82-83 6.332895624697406E-4 3.641414984201009E-4 0.0 0.4528099532853954 5.699606062227665E-4 84-85 6.491218015314841E-4 3.641414984201009E-4 0.0 0.45307910134944507 5.699606062227665E-4 86-87 6.491218015314841E-4 3.799737374818444E-4 0.0 0.4531899270228773 5.8579284528451E-4 88 6.491218015314841E-4 3.799737374818444E-4 0.0 0.4532136753814699 6.016250843462536E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12880 0.0 49.772766 1 GTATCAA 23760 0.0 36.03879 1 TATCAAC 30105 0.0 28.223217 2 TCAACGC 30270 0.0 28.083046 4 ATCAACG 30245 0.0 28.037842 3 CAACGCA 30630 0.0 27.70003 5 AACGCAG 31080 0.0 27.410275 6 ACGCAGA 34485 0.0 24.681965 7 CGCAGAG 34635 0.0 24.539211 8 GCAGAGT 38835 0.0 21.842657 9 TACATGG 23740 0.0 20.3619 2 GAGTACT 26395 0.0 20.269392 12-13 ACATGGG 23220 0.0 20.19407 3 GTGGTAT 5920 0.0 20.133856 1 GTACATG 24685 0.0 20.018309 1 CAGAGTA 38530 0.0 19.270334 10-11 TGGTATC 5785 0.0 18.958271 2 AGAGTAC 37190 0.0 18.695654 10-11 AGTACTT 27685 0.0 18.427832 12-13 GTACTTT 29140 0.0 18.286303 14-15 >>END_MODULE