##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138756_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7785579 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 24.85605283820253 28.0 18.0 31.0 18.0 33.0 2 31.51757936050742 33.0 31.0 33.0 27.0 33.0 3 31.93156462737068 33.0 31.0 33.0 29.0 34.0 4 32.62770925579202 33.0 33.0 34.0 31.0 34.0 5 32.99525712859634 34.0 33.0 34.0 32.0 34.0 6 37.08335385203849 38.0 38.0 38.0 36.0 38.0 7 37.148375477276645 38.0 38.0 38.0 36.0 38.0 8 37.240568235194836 38.0 38.0 38.0 36.0 38.0 9 37.332562677740476 38.0 38.0 38.0 37.0 38.0 10-11 37.34828154720413 38.0 38.0 38.0 37.0 38.0 12-13 37.37234045149371 38.0 38.0 38.0 37.0 38.0 14-15 37.37582259456876 38.0 38.0 38.0 37.0 38.0 16-17 37.36826060078512 38.0 38.0 38.0 37.0 38.0 18-19 37.25395978898936 38.0 38.0 38.0 37.0 38.0 20-21 37.366937478039596 38.0 38.0 38.0 37.0 38.0 22-23 37.385757441224165 38.0 38.0 38.0 37.0 38.0 24-25 37.39291852770914 38.0 38.0 38.0 37.0 38.0 26-27 37.36461817562508 38.0 38.0 38.0 37.0 38.0 28-29 37.34093268274013 38.0 38.0 38.0 37.0 38.0 30-31 37.34259476090473 38.0 38.0 38.0 37.0 38.0 32-33 37.32678267034193 38.0 38.0 38.0 37.0 38.0 34-35 37.30832115754288 38.0 38.0 38.0 37.0 38.0 36-37 37.28277618590594 38.0 38.0 38.0 37.0 38.0 38-39 37.24744145895563 38.0 38.0 38.0 37.0 38.0 40-41 37.24444347407026 38.0 38.0 38.0 37.0 38.0 42-43 37.219733807684776 38.0 38.0 38.0 37.0 38.0 44-45 37.1766681614165 38.0 38.0 38.0 37.0 38.0 46-47 37.1280234177091 38.0 38.0 38.0 36.0 38.0 48-49 37.08664834424779 38.0 38.0 38.0 36.0 38.0 50-51 37.05531433997638 38.0 38.0 38.0 36.0 38.0 52-53 37.03537787697783 38.0 38.0 38.0 36.0 38.0 54-55 37.02264251047232 38.0 38.0 38.0 36.0 38.0 56-57 37.012704156665606 38.0 38.0 38.0 36.0 38.0 58-59 37.00411001296186 38.0 38.0 38.0 36.0 38.0 60-61 37.00587954326218 38.0 38.0 38.0 36.0 38.0 62-63 37.005921433931285 38.0 38.0 38.0 36.0 38.0 64-65 37.01355327800888 38.0 38.0 38.0 36.0 38.0 66-67 37.00985551284857 38.0 38.0 38.0 36.0 38.0 68-69 37.014422622558214 38.0 38.0 38.0 36.0 38.0 70-71 37.009828415330226 38.0 38.0 38.0 36.0 38.0 72-73 36.98561598877181 38.0 38.0 38.0 36.0 38.0 74-75 37.00803756509869 38.0 38.0 38.0 36.0 38.0 76-77 36.99663402438074 38.0 38.0 38.0 36.0 38.0 78-79 36.9898096766121 38.0 38.0 38.0 36.0 38.0 80-81 36.969553258855896 38.0 38.0 38.0 36.0 38.0 82-83 36.96040300162985 38.0 38.0 38.0 36.0 38.0 84-85 36.94641976552704 38.0 38.0 38.0 36.0 38.0 86-87 36.91276092024532 38.0 38.0 38.0 35.0 38.0 88-89 36.89785611940006 38.0 38.0 38.0 35.0 38.0 90-91 36.90649995196976 38.0 38.0 38.0 35.0 38.0 92-93 36.87679870823701 38.0 38.0 38.0 35.0 38.0 94-95 36.821667556673646 38.0 38.0 38.0 35.0 38.0 96-97 36.83887619520179 38.0 38.0 38.0 35.0 38.0 98-99 36.868291204862444 38.0 38.0 38.0 35.0 38.0 100 35.313205768790226 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 16.0 19 25.0 20 94.0 21 211.0 22 633.0 23 1673.0 24 3947.0 25 7730.0 26 13495.0 27 22236.0 28 34249.0 29 51577.0 30 70307.0 31 92240.0 32 119001.0 33 156732.0 34 225378.0 35 384933.0 36 1097847.0 37 5503255.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.082265172570985 18.959848715169418 15.638091913266825 23.31979419899278 2 14.902488305622485 20.594178030946704 41.51285344352681 22.990480219904004 3 18.47483661780325 25.653827416047026 30.431468231200277 25.439867734949452 4 12.760348331190269 17.50531334920627 38.1308313742626 31.603506945340865 5 13.655213410917764 37.22360996239165 34.99922096161723 14.121955665073353 6 30.451713055525087 37.12677389249485 18.389989059235546 14.031523992744518 7 26.83014326872799 32.634708349886374 22.503361663917353 18.031786717468286 8 24.855441066104397 36.16917893967809 20.73242080004583 18.242959194171686 9 26.001393088426695 16.58147711300598 20.865513020932674 36.55161677763465 10-11 24.6394327255558 26.470035176574534 28.2818336311275 20.608698466742165 12-13 25.541550958608923 24.089712793981846 28.50755406293829 21.86118218447094 14-15 22.664079832228246 25.17640470472486 26.52735779715763 25.632157665889267 16-17 21.977633262728435 28.28206482780536 27.148057967172385 22.592243942293823 18-19 21.99785654991106 27.063908798562057 29.287417159340368 21.650817492186516 20-21 22.956886353681924 26.236026855154538 29.24906909923229 21.55801769193125 22-23 22.64991908242982 26.17582882546018 29.09834101961405 22.075911072495952 24-25 22.323490389487066 26.317309046101485 29.250813679475545 22.108386884935907 26-27 22.193994754988697 26.475943148723257 29.228835331004614 22.10122676528343 28-29 22.110712034193373 26.492094614003936 29.291211118115847 22.105982233686845 30-31 22.423337413290195 26.321749382232944 29.117788185202294 22.137125019274563 32-33 22.277957924758347 26.457463125444264 29.118014305592478 22.146564644204915 34-35 22.386879017451427 26.5512281178609 29.09144229491049 21.970450569777178 36-37 22.315347163964624 26.440365684583035 29.038273263388753 22.206013888063588 38-39 22.147651225612716 26.591184298307063 29.15483157239046 22.106332903689758 40-41 22.44487752022306 26.400340159429387 29.0026543121266 22.152128008220956 42-43 22.352896803740556 26.506602028887517 28.850745359675127 22.289755807696796 44-45 22.38103456756613 26.673753606008994 28.67232508031713 22.272886746107748 46-47 22.519912736830836 26.646645014303644 28.316276466978042 22.51716578188748 48-49 22.435927711818174 26.735422075099375 28.29294227525885 22.535707937823606 50-51 22.423873550744712 26.911947003661346 28.19057194993208 22.47360749566186 52-53 22.556122697656562 26.928148517553396 28.077003675928957 22.438725108861085 54-55 22.545011614882448 26.809293598575483 28.035177551585416 22.61051723495665 56-57 22.599532303890843 26.930925086789003 27.936036674850484 22.533505934469666 58-59 22.485406738170997 27.024492583788035 28.058754944864333 22.431345733176634 60-61 22.622645433141837 27.03582707323506 27.954855436070876 22.386672057552236 62-63 22.521931698409578 27.15994325598794 27.925017435661676 22.393107609940806 64-65 22.52524854217412 27.048761331862636 27.921101765091695 22.504888360871554 66-67 22.586636623052165 27.066183065533767 27.787619743818748 22.559560567595323 68-69 22.555777806865045 26.980696091101326 27.946912867859204 22.516613234174425 70-71 22.56223919956479 26.763405189858357 27.936680781123957 22.737674829452896 72-73 22.674366180985 26.76433738871729 27.86033123376229 22.700965196535414 74-75 22.50915224042546 26.91487552322527 27.845493515284524 22.73047872106475 76-77 22.68118481729478 26.806740540718792 27.757680429409227 22.7543942125772 78-79 22.604739258371968 26.871893655303058 27.66902031841069 22.85434676791428 80-81 22.638370930140738 26.952632851283116 27.63252063645999 22.776475582116156 82-83 22.719028417285895 26.92449546752698 27.708761105066866 22.64771501012026 84-85 22.850600542283132 26.918522370676058 27.544312282146898 22.686564804893912 86-87 22.61589265155937 26.975834668954153 27.639409789966233 22.768862889520243 88-89 22.71019526451777 26.94092376766357 27.570377333285546 22.778503634533116 90-91 22.76492288215334 27.019709998297287 27.516659108192233 22.698708011357144 92-93 22.852168678840336 26.9751874778551 27.48800440529991 22.684639438004652 94-95 22.715910470158093 27.053883115070715 27.502293226241477 22.727913188529712 96-97 22.804050688419153 27.132725181076182 27.522793310239656 22.540430820265005 98-99 23.898811491917304 29.05506185319583 27.70919587377148 19.336930781115388 100 22.7807586224031 29.90932785154409 21.6218907438661 25.688022782186714 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2856.0 1 2598.5 2 3107.0 3 4160.0 4 5007.0 5 6549.0 6 8183.5 7 11270.0 8 15010.5 9 16749.5 10 16044.5 11 15033.0 12 16294.0 13 19839.5 14 26411.5 15 33465.5 16 37926.5 17 39539.0 18 37909.0 19 33827.0 20 29350.0 21 25779.5 22 24816.5 23 27462.5 24 33519.5 25 42949.0 26 55254.5 27 68418.5 28 81373.0 29 96471.5 30 111016.5 31 125103.0 32 141806.0 33 158600.5 34 175500.0 35 191737.0 36 209549.5 37 226934.5 38 239315.0 39 249522.0 40 262159.5 41 273613.5 42 281653.5 43 291638.0 44 303677.5 45 316945.0 46 323264.5 47 325538.0 48 328571.0 49 328084.5 50 325534.0 51 321023.5 52 312852.5 53 301058.5 54 287395.5 55 270046.0 56 250619.5 57 229934.5 58 206198.0 59 180777.0 60 153299.5 61 125370.0 62 100156.5 63 77739.0 64 58807.0 65 44303.5 66 33341.5 67 25189.5 68 18858.5 69 14045.0 70 10419.0 71 7462.0 72 5340.5 73 3626.5 74 2364.0 75 1538.0 76 980.5 77 594.5 78 336.0 79 184.5 80 124.5 81 95.5 82 73.5 83 53.0 84 31.5 85 18.0 86 10.5 87 6.0 88 3.0 89 1.5 90 1.5 91 1.5 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.00436704835953755 6 2.1835241797687753E-4 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 6.4221299404963965E-6 14-15 1.9266389821489194E-5 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 3.8673503970286375E-5 34-35 1.9387062509124036E-4 36-37 2.1407323964493682E-4 38-39 1.8265091580843025E-4 40-41 1.5096586648631277E-4 42-43 2.2458301539424094E-4 44-45 1.996816940675434E-4 46-47 2.68650778032802E-5 48-49 3.5236356330363883E-4 50-51 4.987717915445473E-4 52-53 4.1305495999149655E-4 54-55 0.002157344947942087 56-57 0.003189307650267797 58-59 0.0019821035098186073 60-61 0.0034361801742221606 62-63 0.0019514072336513865 64-65 0.002640820868417663 66-67 8.032206519420743E-4 68-69 7.152958721823795E-4 70-71 4.0225408289756425E-4 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 59.0 20-21 284.0 22-23 704.0 24-25 773.0 26-27 2153.0 28-29 5647.0 30-31 14454.0 32-33 18698.0 34-35 25848.0 36-37 40051.0 38-39 47788.0 40-41 46671.0 42-43 54830.0 44-45 65811.0 46-47 67217.0 48-49 62366.0 50-51 55922.0 52-53 54016.0 54-55 58403.0 56-57 60341.0 58-59 60355.0 60-61 59404.0 62-63 58042.0 64-65 61870.0 66-67 66471.0 68-69 67364.0 70-71 71440.0 72-73 61323.0 74-75 61819.0 76-77 64022.0 78-79 65780.0 80-81 65797.0 82-83 61837.0 84-85 60651.0 86-87 62997.0 88-89 65110.0 90-91 65746.0 92-93 65477.0 94-95 76535.0 96-97 241283.0 98-99 528507.0 100-101 5111713.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.99087288724883 #Duplication Level Percentage of deduplicated Percentage of total 1 89.95136140248033 76.45044722993187 2 6.960916000058064 11.832286538795028 3 1.6965466591710407 4.325729443706778 4 0.6281161323019452 2.1353655343562 5 0.2877305007693665 1.222723320833684 6 0.14604758376282947 0.744762697624588 7 0.09545715608821623 0.5679090913490299 8 0.06322527141906399 0.4298856805151579 9 0.04072542247368376 0.3115160284266327 >10 0.12654927230413957 1.652321870083605 >50 0.0025688663243814665 0.14554599862562712 >100 6.315654831531753E-4 0.08051375994141158 >500 7.450072712269708E-5 0.04160036978998247 >1k 4.9666636677361204E-5 0.05939243602047961 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.568851976198559E-5 2 0.0 0.0 0.0 0.0 2.568851976198559E-5 3 0.0 0.0 0.0 0.0 2.568851976198559E-5 4 0.0 2.568851976198559E-5 0.0 0.0 2.568851976198559E-5 5 0.0 3.853277964297838E-5 0.0 0.0 2.568851976198559E-5 6 7.706555928595676E-5 3.853277964297838E-5 0.0 0.0 2.568851976198559E-5 7 7.706555928595676E-5 3.853277964297838E-5 0.0 0.0 2.568851976198559E-5 8 8.990981916694956E-5 3.853277964297838E-5 0.0 0.0 2.568851976198559E-5 9 8.990981916694956E-5 1.2844259880992795E-4 0.0 1.2844259880992795E-5 8.990981916694956E-5 10-11 9.633194910744597E-5 1.2844259880992795E-4 0.0 1.926638982148919E-5 9.633194910744597E-5 12-13 1.0275407904794236E-4 1.2844259880992795E-4 0.0 2.568851976198559E-5 1.0275407904794236E-4 14-15 1.0275407904794236E-4 1.7981963833389912E-4 0.0 2.568851976198559E-5 1.0275407904794236E-4 16-17 1.5413111857191352E-4 1.926638982148919E-4 0.0 3.853277964297838E-5 1.0275407904794236E-4 18-19 1.5413111857191352E-4 2.119302880363811E-4 0.0 3.853277964297838E-5 1.0275407904794236E-4 20-21 1.5413111857191352E-4 2.504630676793595E-4 0.0 3.853277964297838E-5 1.0275407904794236E-4 22-23 1.7981963833389912E-4 3.0826223714382705E-4 0.0 3.853277964297838E-5 1.0917620898843875E-4 24-25 2.183524179768775E-4 3.4679501678680546E-4 0.0 4.495490958347478E-5 1.1559833892893516E-4 26-27 2.440409377388631E-4 3.72483536548791E-4 0.0 8.348768922645317E-5 1.2844259880992795E-4 28-29 2.440409377388631E-4 3.72483536548791E-4 0.0 3.72483536548791E-4 1.2844259880992795E-4 30-31 2.440409377388631E-4 3.9817205631077665E-4 0.0 0.0012458932084563011 1.2844259880992795E-4 32-33 2.568851976198559E-4 3.9817205631077665E-4 0.0 0.002652339665425012 1.7981963833389912E-4 34-35 2.8899584732233784E-4 4.752376155967334E-4 0.0 0.0050670605230516575 1.990860281553883E-4 36-37 3.0826223714382705E-4 5.523031748826901E-4 0.0 0.008156105024430425 2.3119667785787029E-4 38-39 3.0826223714382705E-4 5.908359545256685E-4 0.0 0.013088300818731658 2.440409377388631E-4 40-41 3.211064970248199E-4 6.293687341686469E-4 0.0 0.0180012302232114 2.825737173818415E-4 42-43 3.211064970248199E-4 6.486351239901361E-4 0.0 0.023004069446858094 3.0826223714382705E-4 44-45 3.211064970248199E-4 7.064342934546036E-4 0.0 0.02845003563639904 3.0826223714382705E-4 46-47 3.211064970248199E-4 7.44967073097582E-4 0.0 0.03448683778046566 3.0826223714382705E-4 48-49 3.2752862696531625E-4 7.44967073097582E-4 0.0 0.04078052512215212 3.0826223714382705E-4 50-51 3.5963927666779824E-4 8.09188372502546E-4 0.0 0.047331097661458446 3.0826223714382705E-4 52-53 3.789056664892874E-4 8.09188372502546E-4 0.0 0.05343212110493002 3.0826223714382705E-4 54-55 3.9174992637028023E-4 8.09188372502546E-4 0.0 0.05940470194959167 3.0826223714382705E-4 56-57 4.1101631619176943E-4 8.220326323835389E-4 0.0 0.06520388528585992 3.1468436708432347E-4 58-59 4.238605760727622E-4 8.284547623240352E-4 0.0 0.07071407277480583 3.211064970248199E-4 60-61 4.4312696589425137E-4 8.477211521455244E-4 0.0 0.07698207159673032 3.211064970248199E-4 62-63 4.752376155967334E-4 8.605654120265173E-4 0.0 0.08330786958811927 3.3395075690581267E-4 64-65 4.880818754777262E-4 9.37630971312474E-4 0.0 0.08898503245551809 3.4679501678680546E-4 66-67 5.00926135358719E-4 9.504752311934668E-4 0.0 0.09462366254327392 3.4679501678680546E-4 68-69 5.00926135358719E-4 9.633194910744595E-4 0.0 0.10057697699811408 3.4679501678680546E-4 70-71 5.073482652992155E-4 9.825858808959489E-4 0.0 0.10512384499598552 3.4679501678680546E-4 72-73 5.330367850612009E-4 9.890080108364452E-4 0.0 0.10922758602796273 3.5963927666779824E-4 74-75 5.394589150016974E-4 0.001014696530598431 0.0 0.11242580673832993 3.5963927666779824E-4 76-77 5.394589150016974E-4 0.001053229310241409 0.0 0.11535429799119629 3.853277964297838E-4 78-79 5.394589150016974E-4 0.0010789178300033948 0.0 0.11715891650447577 4.1101631619176943E-4 80-81 5.523031748826901E-4 0.0010789178300033948 0.0 0.1178203958883469 4.1101631619176943E-4 82-83 5.779916946446758E-4 0.0010789178300033948 0.0 0.11834058841352711 4.3028270601325864E-4 84-85 5.779916946446758E-4 0.0010917620898843875 0.0 0.118533252311742 4.495490958347478E-4 86-87 5.779916946446758E-4 0.0011110284797058766 0.0 0.11867453917043291 4.559712257752442E-4 88 5.779916946446758E-4 0.0012202046886943155 0.0 0.11869380556025441 4.623933557157406E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11670 0.0 54.428627 1 GTATCAA 22320 0.0 39.36655 1 TCAACGC 28240 0.0 31.174576 4 ATCAACG 28400 0.0 30.983902 3 TATCAAC 28885 0.0 30.567179 2 CAACGCA 29030 0.0 30.355642 5 AACGCAG 29815 0.0 29.540184 6 ACGCAGA 34220 0.0 25.712467 7 GTGGTAT 4835 0.0 25.443874 1 CGCAGAG 34845 0.0 25.300306 8 TGGTATC 5055 0.0 22.899996 2 GCAGAGT 39955 0.0 22.064552 9 GAGTACT 24030 0.0 20.432041 12-13 GTACATG 27445 0.0 20.248892 1 TACATGG 27695 0.0 19.988989 2 CAGAGTA 38895 0.0 19.426323 10-11 ACATGGG 28025 0.0 19.38781 3 AGAGTAC 36870 0.0 19.375349 10-11 CTTATAC 4690 0.0 18.853188 1 GTACTTT 26245 0.0 18.593775 14-15 >>END_MODULE