##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138755_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7458034 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 24.705493699814188 25.0 18.0 31.0 18.0 33.0 2 31.47147599488015 32.0 31.0 33.0 27.0 33.0 3 31.870290213211685 33.0 31.0 33.0 29.0 34.0 4 32.60111941028963 33.0 33.0 34.0 31.0 34.0 5 32.977721474587 34.0 33.0 34.0 31.0 34.0 6 37.06126346433926 38.0 38.0 38.0 36.0 38.0 7 37.131634556774614 38.0 38.0 38.0 36.0 38.0 8 37.22375910327038 38.0 38.0 38.0 36.0 38.0 9 37.319990362071294 38.0 38.0 38.0 37.0 38.0 10-11 37.34064982809143 38.0 38.0 38.0 37.0 38.0 12-13 37.36503071721046 38.0 38.0 38.0 37.0 38.0 14-15 37.36778553168301 38.0 38.0 38.0 37.0 38.0 16-17 37.35906118153926 38.0 38.0 38.0 37.0 38.0 18-19 37.245986609876006 38.0 38.0 38.0 37.0 38.0 20-21 37.36117280270867 38.0 38.0 38.0 37.0 38.0 22-23 37.383017890943705 38.0 38.0 38.0 37.0 38.0 24-25 37.39202184640325 38.0 38.0 38.0 37.0 38.0 26-27 37.36485446422653 38.0 38.0 38.0 37.0 38.0 28-29 37.34572152394053 38.0 38.0 38.0 37.0 38.0 30-31 37.34795326621388 38.0 38.0 38.0 37.0 38.0 32-33 37.33278173505676 38.0 38.0 38.0 37.0 38.0 34-35 37.314960500608464 38.0 38.0 38.0 37.0 38.0 36-37 37.29604173924718 38.0 38.0 38.0 37.0 38.0 38-39 37.256613627218485 38.0 38.0 38.0 37.0 38.0 40-41 37.27814026843513 38.0 38.0 38.0 37.0 38.0 42-43 37.265775026852104 38.0 38.0 38.0 37.0 38.0 44-45 37.238647146147166 38.0 38.0 38.0 37.0 38.0 46-47 37.20821540607312 38.0 38.0 38.0 37.0 38.0 48-49 37.18326090689568 38.0 38.0 38.0 37.0 38.0 50-51 37.1592150488402 38.0 38.0 38.0 36.5 38.0 52-53 37.14039871228775 38.0 38.0 38.0 36.0 38.0 54-55 37.126230232785154 38.0 38.0 38.0 36.0 38.0 56-57 37.11562619926083 38.0 38.0 38.0 36.0 38.0 58-59 37.10454323493627 38.0 38.0 38.0 36.0 38.0 60-61 37.10065343280891 38.0 38.0 38.0 36.0 38.0 62-63 37.09469122997738 38.0 38.0 38.0 36.0 38.0 64-65 37.10074776768734 38.0 38.0 38.0 36.0 38.0 66-67 37.08954876856282 38.0 38.0 38.0 36.0 38.0 68-69 37.08911160653865 38.0 38.0 38.0 36.0 38.0 70-71 37.081204929203395 38.0 38.0 38.0 36.0 38.0 72-73 37.049185111288665 38.0 38.0 38.0 36.0 38.0 74-75 37.06913968681 38.0 38.0 38.0 36.0 38.0 76-77 37.05998328178623 38.0 38.0 38.0 36.0 38.0 78-79 37.05141662197772 38.0 38.0 38.0 36.0 38.0 80-81 37.02940270758316 38.0 38.0 38.0 36.0 38.0 82-83 37.02136922953946 38.0 38.0 38.0 36.0 38.0 84-85 37.00445904520842 38.0 38.0 38.0 36.0 38.0 86-87 36.97038144463494 38.0 38.0 38.0 36.0 38.0 88-89 36.9553099474922 38.0 38.0 38.0 36.0 38.0 90-91 36.95904523564242 38.0 38.0 38.0 36.0 38.0 92-93 36.927188099244376 38.0 38.0 38.0 35.0 38.0 94-95 36.867812079186336 38.0 38.0 38.0 35.0 38.0 96-97 36.88188562356984 38.0 38.0 38.0 35.0 38.0 98-99 36.91328402121664 38.0 38.0 38.0 35.0 38.0 100 35.41609971462419 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 5.0 18 14.0 19 13.0 20 74.0 21 198.0 22 565.0 23 1491.0 24 3421.0 25 6701.0 26 11749.0 27 18848.0 28 29032.0 29 42268.0 30 59559.0 31 79881.0 32 105253.0 33 142323.0 34 210552.0 35 370353.0 36 1068007.0 37 5307727.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.1451417357443 18.627254850272873 15.334778575694344 23.892824838288483 2 15.253470284528067 20.21444257293544 40.76870660552097 23.763380537015518 3 18.77462612801175 25.129303513499668 29.992300920054802 26.103769438433776 4 13.301146119741475 17.23367042842658 36.724718605466265 32.74046484636568 5 14.26528299624994 36.832347133163104 34.451427635872435 14.450942234714523 6 31.49778634067814 36.11569194100359 17.91631363474427 14.470208083574002 7 27.731892882226067 31.787934997346483 21.84815730258135 18.632014817846095 8 25.47810857392176 35.794017565487096 20.3267509909448 18.401122869646343 9 26.188858886939908 16.458519765396616 20.222474180192794 37.13014716747068 10-11 25.3071654004259 25.908992906173395 27.684836245047954 21.09900544835274 12-13 26.092501461678875 23.352100791716744 27.909830386253965 22.64556736035042 14-15 23.237477866150787 24.527536345369302 25.368012535207 26.866973253272914 16-17 22.97199905497883 27.787805740762245 25.985809396953673 23.25438580730525 18-19 23.137069367074485 26.652023844353618 27.68868444418462 22.522222344387274 20-21 23.750082058622343 25.812682108953865 27.650225281512203 22.78701055091158 22-23 23.656001964930393 25.88294766924083 27.49536300304894 22.965687362779835 24-25 23.500788769023902 26.104001590686433 27.51194557748653 22.883264062803136 26-27 23.343455072662145 26.197356135931237 27.564854449254256 22.894334342152366 28-29 23.192317524010424 26.14885924983943 27.573957847772522 23.08486537837762 30-31 23.69760440815778 25.968121493129054 27.42594496522528 22.908329133487886 32-33 23.08085129531694 26.388218526753 27.47807980336473 23.052850374565335 34-35 23.396826922440905 26.20350445410412 27.558027005541526 22.841641617913446 36-37 23.227291071298037 26.21079204783639 27.496161627411713 23.065755253453858 38-39 23.10412569124107 26.049445413308824 27.743971963749914 23.102456931700193 40-41 23.325085443656512 25.85630174327873 27.674728826391547 23.14388398667321 42-43 23.3822199208698 25.954502685291448 27.455452911991053 23.207824481847698 44-45 23.21335349701649 26.11999380739084 27.411698243953964 23.2549544516387 46-47 23.59409521143113 25.99078970960938 27.02818039363998 23.38693468531951 48-49 23.354744485397173 26.15627096878382 26.942318941658872 23.546665604160136 50-51 23.247154376544643 26.360298353431382 26.969555570436587 23.42299169958739 52-53 23.547409655305476 26.249736392505778 26.89760429776758 23.30524965442116 54-55 23.395795580465922 26.191525672431727 26.709499229823436 23.703179517278915 56-57 23.553555151771366 26.453728696746143 26.538957008249543 23.453759143232947 58-59 23.307343758776025 26.661676531300373 26.784009491780775 23.246970218142827 60-61 23.54931170588566 26.811506015355963 26.490418069460116 23.14876420929826 62-63 23.32936143307236 27.122667982573194 26.403315200810084 23.144655383544364 64-65 23.38391668758567 27.04861756991613 26.32120061233986 23.24626513015834 66-67 23.383344050005906 26.96353811989431 26.31491673468241 23.33820109541738 68-69 23.290773373472128 26.865112977110723 26.46247374066904 23.381639908748106 70-71 23.43652413851768 26.573243450301987 26.52181711456966 23.46841529661067 72-73 23.569949104729634 26.441833662517666 26.382966957350153 23.605250275402547 74-75 23.35342777493676 26.56074192129895 26.523902023626363 23.561928280137938 76-77 23.679673131081884 26.378112464124943 26.37150611095666 23.57070829383651 78-79 23.467523618096784 26.416215780193543 26.386154439070154 23.730106162639526 80-81 23.571523392002653 26.487928176047742 26.354698280234356 23.58585015171525 82-83 23.59911715322091 26.445868250398767 26.37959217076143 23.575422425618893 84-85 23.596358288598076 26.47570260304234 26.325132194735513 23.602806913624075 86-87 23.517640595930814 26.456930452509514 26.453684203374237 23.571744748185434 88-89 23.547285560310776 26.429803361189492 26.372832755565266 23.65007832293447 90-91 23.591320847052504 26.448079412841953 26.355340687249434 23.60525905285611 92-93 23.64839218228991 26.4850803469758 26.28173730851583 23.58479016221846 94-95 23.592891890910792 26.444629009310905 26.352084161579103 23.610394938199196 96-97 23.715363201087467 26.491565375556224 26.397147606327465 23.395923817028844 98-99 24.837586104766803 28.48588942618035 26.478514146814796 20.19801032223805 100 23.686925228280295 29.11645450067375 20.47003553966968 26.726584731376278 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2160.0 1 1864.0 2 1717.0 3 2284.5 4 3245.0 5 4323.5 6 5067.5 7 5128.0 8 4904.5 9 5056.0 10 5448.0 11 6635.5 12 8589.0 13 12947.0 14 19368.0 15 25546.0 16 30308.5 17 31643.0 18 30811.5 19 27128.5 20 22987.5 21 20826.5 22 20277.5 23 22234.5 24 26415.0 25 33480.0 26 42377.5 27 51825.0 28 62136.0 29 74176.5 30 86629.5 31 99810.5 32 114631.5 33 128729.0 34 141413.5 35 153650.0 36 169178.5 37 186643.0 38 201960.0 39 213819.0 40 225578.0 41 238069.0 42 251465.0 43 276353.0 44 295710.0 45 302739.5 46 306216.5 47 306615.5 48 312814.5 49 318090.5 50 320319.0 51 323435.5 52 322346.5 53 315971.0 54 310232.0 55 299512.0 56 281730.5 57 261266.5 58 237642.5 59 211746.5 60 182164.5 61 152292.5 62 124582.0 63 98814.0 64 75973.5 65 56839.5 66 41980.5 67 31809.5 68 24512.0 69 18207.0 70 13358.5 71 9604.5 72 6516.5 73 4295.0 74 2830.5 75 1855.5 76 1191.5 77 706.0 78 411.5 79 250.5 80 169.0 81 105.5 82 68.0 83 49.5 84 35.0 85 20.5 86 11.0 87 9.0 88 4.5 89 2.0 90 2.5 91 3.0 92 2.5 93 1.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0038213824179401702 6 2.815755465850652E-4 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 6.704179680596791E-6 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 5.386084283735957E-5 34-35 1.2824153253221073E-4 36-37 1.3549370824803722E-4 38-39 1.702812958461104E-4 40-41 8.22116411272778E-5 42-43 1.7227954575258907E-4 44-45 1.5266382059669488E-4 46-47 6.296243283482478E-5 48-49 4.090163277202424E-4 50-51 3.558150823324077E-4 52-53 4.234928875087327E-4 54-55 0.0020527982603835812 56-57 0.0034524250008011958 58-59 0.002077752280241354 60-61 0.0034717007165990005 62-63 0.0021194959898240312 64-65 0.0026787646500585263 66-67 7.368053729366981E-4 68-69 7.062314950076341E-4 70-71 3.958244402188676E-4 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 1.749429707783134E-5 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 703.0 20-21 2283.0 22-23 1352.0 24-25 1437.0 26-27 2626.0 28-29 5604.0 30-31 13627.0 32-33 17212.0 34-35 24066.0 36-37 37463.0 38-39 43194.0 40-41 41668.0 42-43 47725.0 44-45 57204.0 46-47 57857.0 48-49 53978.0 50-51 72609.0 52-53 47247.0 54-55 51922.0 56-57 54238.0 58-59 55341.0 60-61 55821.0 62-63 53915.0 64-65 59548.0 66-67 67499.0 68-69 69996.0 70-71 81584.0 72-73 58110.0 74-75 56237.0 76-77 58555.0 78-79 60468.0 80-81 59570.0 82-83 56631.0 84-85 55779.0 86-87 57797.0 88-89 61013.0 90-91 62045.0 92-93 61863.0 94-95 70792.0 96-97 235881.0 98-99 512754.0 100-101 4912820.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.50973613136887 #Duplication Level Percentage of deduplicated Percentage of total 1 89.90679459558703 75.9799948769024 2 6.937548791787684 11.725808355849482 3 1.6771605860117407 4.252091957213525 4 0.618721285753543 2.0915189039157274 5 0.3150129464621445 1.331083049174043 6 0.16811339811473996 0.8524331348894663 7 0.10791422869244006 0.6383862094132813 8 0.06724133581899355 0.45460380377471254 9 0.04660405082464331 0.3544646434059159 >10 0.15045068649160728 2.020625080797495 >50 0.0035268086561687 0.19928734907626236 >100 9.112857992850264E-4 0.09970263558769166 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.340835936119358E-5 0.0 0.0 0.0 3 0.0 1.340835936119358E-5 0.0 0.0 0.0 4 0.0 9.385851552835505E-5 0.0 0.0 0.0 5 1.340835936119358E-5 1.0726687488954864E-4 0.0 0.0 0.0 6 4.022507808358074E-5 1.0726687488954864E-4 0.0 0.0 0.0 7 4.022507808358074E-5 1.0726687488954864E-4 0.0 0.0 0.0 8 4.022507808358074E-5 1.0726687488954864E-4 0.0 0.0 0.0 9 4.022507808358074E-5 1.7430867169551653E-4 0.0 0.0 1.340835936119358E-5 10-11 4.022507808358074E-5 1.7430867169551653E-4 0.0 0.0 1.340835936119358E-5 12-13 4.022507808358074E-5 1.7430867169551653E-4 0.0 0.0 2.011253904179037E-5 14-15 5.363343744477432E-5 2.3464628882088765E-4 0.0 0.0 3.352089840298395E-5 16-17 1.0726687488954864E-4 2.4135046850148445E-4 0.0 0.0 4.022507808358074E-5 18-19 1.0726687488954864E-4 2.5475882786267804E-4 0.0 0.0 4.6929257764177527E-5 20-21 1.0726687488954864E-4 2.815755465850652E-4 0.0 0.0 6.033761712537111E-5 22-23 1.0726687488954864E-4 3.2180062466864593E-4 0.0 0.0 6.70417968059679E-5 24-25 1.2737941393133902E-4 3.82138241794017E-4 0.0 0.0 7.374597648656468E-5 26-27 1.474919529731294E-4 4.1565914019700095E-4 0.0 2.681671872238716E-5 8.045015616716148E-5 28-29 1.474919529731294E-4 4.1565914019700095E-4 0.0 2.9498390594625873E-4 8.045015616716148E-5 30-31 1.6760449201491976E-4 4.894051166835656E-4 0.0 8.983600771999699E-4 8.715433584775827E-5 32-33 1.7430867169551653E-4 5.162218354059528E-4 0.0 0.0024068005053342477 9.385851552835505E-5 34-35 1.810128513761133E-4 5.899678118925175E-4 0.0 0.004672813237375962 1.0726687488954864E-4 36-37 1.877170310567101E-4 6.570096086984855E-4 0.0 0.007723214992047502 1.0726687488954864E-4 38-39 1.877170310567101E-4 6.70417968059679E-4 0.0 0.012637378697924948 1.2067523425074222E-4 40-41 1.877170310567101E-4 8.045015616716148E-4 0.0 0.017383937911787474 1.2067523425074222E-4 42-43 1.877170310567101E-4 8.179099210328083E-4 0.0 0.022143905485011196 1.2737941393133902E-4 44-45 1.877170310567101E-4 9.58697694325341E-4 0.0 0.027594403565336385 1.474919529731294E-4 46-47 1.877170310567101E-4 0.00108607710825668 0.0 0.03350749004362276 1.474919529731294E-4 48-49 1.877170310567101E-4 0.00108607710825668 0.0 0.039507730857756884 1.7430867169551653E-4 50-51 1.877170310567101E-4 0.0011665272644238414 0.0 0.04559512600773877 1.7430867169551653E-4 52-53 1.877170310567101E-4 0.0011799356237850351 0.0 0.05168922533740125 1.877170310567101E-4 54-55 1.877170310567101E-4 0.0012000481628268254 0.0 0.057173244316129426 2.011253904179037E-4 56-57 1.877170310567101E-4 0.0012335690612298093 0.0 0.06249636298252327 2.078295700985005E-4 58-59 1.944212107373069E-4 0.0012335690612298093 0.0 0.06781277746923653 2.1453374977909728E-4 60-61 2.011253904179037E-4 0.0012670899596327933 0.0 0.07362530125231395 2.1453374977909728E-4 62-63 2.2794210914029085E-4 0.0012872024986745837 0.0 0.07886796976254064 2.5475882786267804E-4 64-65 2.2794210914029085E-4 0.00144139863132831 0.0 0.08405030065564195 2.5475882786267804E-4 66-67 2.2794210914029085E-4 0.0014481028110089067 0.0 0.08903821033800596 2.614630075432748E-4 68-69 2.2794210914029085E-4 0.0015017362484536808 0.0 0.09448870841833115 2.815755465850652E-4 70-71 2.2794210914029085E-4 0.0015352571468566648 0.0 0.0994028721242086 2.949839059462588E-4 72-73 2.2794210914029085E-4 0.0015553696858984552 0.0 0.10303653751109207 2.949839059462588E-4 74-75 2.2794210914029085E-4 0.0015821864046208424 0.0 0.10583218043790092 3.0839226530745233E-4 76-77 2.2794210914029085E-4 0.0016492282014268103 0.0 0.10853396484918143 3.285048043492427E-4 78-79 2.4135046850148445E-4 0.0016626365607880038 0.0 0.11039102262070674 3.352089840298395E-4 80-81 2.4135046850148445E-4 0.0016626365607880038 0.0 0.11104132804972464 3.486173433910331E-4 82-83 2.4135046850148445E-4 0.0016626365607880038 0.0 0.11141676211183804 3.6202570275222667E-4 84-85 2.4805464818208124E-4 0.0016693407404686006 0.0 0.11162459168193656 3.6202570275222667E-4 86-87 2.5475882786267804E-4 0.001729678357593972 0.0 0.1117251543771455 3.6872988243282347E-4 88 2.5475882786267804E-4 0.0017967201543999398 0.0 0.1117318585568261 3.754340621134202E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10025 0.0 51.975166 1 CTTATAC 6080 0.0 38.033848 1 GTATCAA 18155 0.0 36.846367 1 TATACAC 8295 0.0 30.763414 3 TCAACGC 22450 0.0 29.968496 4 ATCAACG 22905 0.0 29.279875 3 TATCAAC 23175 0.0 29.03097 2 CAACGCA 23335 0.0 28.776962 5 TTATACA 8540 0.0 28.22915 2 AACGCAG 24010 0.0 28.055456 6 GTGGTAT 4640 0.0 24.41206 1 TACACAT 10290 0.0 24.383682 5 ACGCAGA 27575 0.0 24.366177 7 CGCAGAG 28290 0.0 23.750347 8 TGGTATC 4795 0.0 22.998934 2 GTACATG 26375 0.0 22.721243 1 TACATGG 27315 0.0 22.033222 2 ACACATC 10775 0.0 21.896519 6 ACATGGG 27520 0.0 21.341005 3 ACATCTC 11770 0.0 20.590029 8 >>END_MODULE