##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138754_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7636511 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.47225008907864 28.0 18.0 32.0 18.0 33.0 2 31.639800820034175 33.0 32.0 33.0 27.0 33.0 3 32.00118797707487 33.0 33.0 33.0 29.0 34.0 4 32.66066231031422 33.0 33.0 34.0 31.0 34.0 5 33.01038262106871 34.0 33.0 34.0 32.0 34.0 6 37.08128293143295 38.0 38.0 38.0 36.0 38.0 7 37.14794308552688 38.0 38.0 38.0 36.0 38.0 8 37.23296961138405 38.0 38.0 38.0 36.0 38.0 9 37.323829036584904 38.0 38.0 38.0 37.0 38.0 10-11 37.34357961377912 38.0 38.0 38.0 37.0 38.0 12-13 37.36643880955583 38.0 38.0 38.0 37.0 38.0 14-15 37.36802245161435 38.0 38.0 38.0 37.0 38.0 16-17 37.357231856275725 38.0 38.0 38.0 37.0 38.0 18-19 37.241375544407646 38.0 38.0 38.0 37.0 38.0 20-21 37.355800751695114 38.0 38.0 38.0 37.0 38.0 22-23 37.373684923406884 38.0 38.0 38.0 37.0 38.0 24-25 37.38094218481399 38.0 38.0 38.0 37.0 38.0 26-27 37.351956712013276 38.0 38.0 38.0 37.0 38.0 28-29 37.32604117730226 38.0 38.0 38.0 37.0 38.0 30-31 37.327337038385025 38.0 38.0 38.0 37.0 38.0 32-33 37.31117866301834 38.0 38.0 38.0 37.0 38.0 34-35 37.28986210303835 38.0 38.0 38.0 37.0 38.0 36-37 37.26405632048634 38.0 38.0 38.0 37.0 38.0 38-39 37.22259645999476 38.0 38.0 38.0 37.0 38.0 40-41 37.23404689566061 38.0 38.0 38.0 37.0 38.0 42-43 37.216030517065775 38.0 38.0 38.0 37.0 38.0 44-45 37.18212583576754 38.0 38.0 38.0 37.0 38.0 46-47 37.14380216797371 38.0 38.0 38.0 36.0 38.0 48-49 37.10909560964109 38.0 38.0 38.0 36.0 38.0 50-51 37.08037106725935 38.0 38.0 38.0 36.0 38.0 52-53 37.059516728099396 38.0 38.0 38.0 36.0 38.0 54-55 37.04513207593382 38.0 38.0 38.0 36.0 38.0 56-57 37.031959077398156 38.0 38.0 38.0 36.0 38.0 58-59 37.02128863059285 38.0 38.0 38.0 36.0 38.0 60-61 37.016770491733524 38.0 38.0 38.0 36.0 38.0 62-63 37.00944937139268 38.0 38.0 38.0 36.0 38.0 64-65 37.015055533538536 38.0 38.0 38.0 36.0 38.0 66-67 37.0078645864331 38.0 38.0 38.0 36.0 38.0 68-69 37.00933922960051 38.0 38.0 38.0 36.0 38.0 70-71 36.99940606912463 38.0 38.0 38.0 36.0 38.0 72-73 36.96931786379978 38.0 38.0 38.0 36.0 38.0 74-75 36.98953871029961 38.0 38.0 38.0 36.0 38.0 76-77 36.97749664158627 38.0 38.0 38.0 36.0 38.0 78-79 36.97014125356588 38.0 38.0 38.0 36.0 38.0 80-81 36.94699835240642 38.0 38.0 38.0 36.0 38.0 82-83 36.93960548391064 38.0 38.0 38.0 36.0 38.0 84-85 36.922416108367855 38.0 38.0 38.0 35.5 38.0 86-87 36.88568486503173 38.0 38.0 38.0 35.0 38.0 88-89 36.87061711148895 38.0 38.0 38.0 35.0 38.0 90-91 36.8787161601554 38.0 38.0 38.0 35.0 38.0 92-93 36.84700895321692 38.0 38.0 38.0 35.0 38.0 94-95 36.78847109288561 38.0 38.0 38.0 35.0 38.0 96-97 36.80321500515279 38.0 38.0 38.0 35.0 38.0 98-99 36.82921841691439 38.0 38.0 38.0 35.0 38.0 100 35.24857077445148 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 12.0 19 36.0 20 91.0 21 240.0 22 657.0 23 1780.0 24 3968.0 25 7805.0 26 13868.0 27 22331.0 28 34397.0 29 49755.0 30 68123.0 31 89122.0 32 115682.0 33 154316.0 34 222261.0 35 381913.0 36 1061365.0 37 5408787.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.03465574789325 19.686542715645928 15.626259164689216 23.652542371771613 2 14.418128907298112 20.766302831227506 42.170449305972326 22.64511895550206 3 18.189589460422436 25.97636538466323 30.744969790523445 25.089075364390883 4 12.432156517551013 18.05594203949945 38.781742080905794 30.73015936204374 5 13.3713365286399 37.39141195882769 35.55988580707682 13.677365705455594 6 29.678648174750442 37.86238180106306 18.784022502484778 13.674947521701725 7 26.220141632743015 32.61623010822613 23.106219581167366 18.05740867786349 8 24.122953532051483 36.90832109061324 21.16308088864142 17.805644488693854 9 25.32507319114711 16.991581626740274 21.346410684146203 36.33693449796642 10-11 24.19923836945956 26.73736736580357 28.821925353083365 20.241468911653502 12-13 25.033632835311366 24.31022650986992 28.91258383000979 21.743556824808923 14-15 22.181485902494337 25.517256867518224 26.71719629011183 25.584060939875613 16-17 21.659400477521736 28.697817629019323 27.409133568981957 22.233648324476977 18-19 21.71305063267767 27.625515107619176 29.197659768970414 21.463774490732746 20-21 22.47568586301322 26.747717936761045 29.233181966216808 21.543414234008925 22-23 22.178997065932094 26.85648761381226 29.055077435649924 21.909437884605726 24-25 22.03571335255147 26.967560706497895 29.191749373815007 21.80497656713563 26-27 21.981446331096656 27.10662786157328 29.131477774329927 21.780448033000134 28-29 21.71480084684273 27.049667660415146 29.247691672199927 21.98783982054219 30-31 22.16272682320339 26.82604920147098 29.295079846344496 21.716144128981128 32-33 21.788005470690944 27.145781301115292 29.136099859816827 21.930113368376936 34-35 21.93479848458241 27.185346301443573 29.28419979560286 21.595655418371155 36-37 22.06443381753529 27.008585277135484 29.05918771081677 21.86779319451246 38-39 21.81870307018517 27.048392052906934 29.194551162955367 21.93835371395253 40-41 22.083933717458912 26.92929835114092 29.092906023523902 21.89386190787627 42-43 22.08811681559215 26.930696808897075 29.020606684767973 21.9605796907428 44-45 22.013208610012786 27.14507274399155 28.88660696860018 21.955111677395482 46-47 22.197069192543626 27.030424097638 28.489318771519024 22.28318793829935 48-49 22.09713282283302 27.116545037790168 28.519718090021577 22.266604049355227 50-51 22.015075313835663 27.29004878033226 28.42331410268097 22.27156180315111 52-53 22.159944811086035 27.308431863025156 28.43255274696369 22.09907057892512 54-55 22.13261918367255 27.224021828874044 28.311697277633673 22.33166170981973 56-57 22.232289840302407 27.42624578450958 28.146708522836057 22.194755852351957 58-59 22.017038012167195 27.670458998714125 28.3647554247775 21.94774756434118 60-61 22.223241487242447 27.805760799556566 28.050578664332093 21.92041904886889 62-63 22.068982124669635 27.98119581917198 27.957144061181406 21.992677994976983 64-65 22.005309801942357 27.87415680185746 28.02511329963746 22.095420096562727 66-67 22.117540174442098 27.828508775262833 27.931703761994747 22.12224728830032 68-69 22.115183375582372 27.6992017423845 28.03466082712748 22.150954054905647 70-71 22.132166032890996 27.423927536320253 28.11606371223852 22.327842718550233 72-73 22.2681222069335 27.265420466860686 28.145487561340914 22.3209697648649 74-75 22.140060845955453 27.414902062054708 28.087944521802854 22.357092570186985 76-77 22.25046611720016 27.388322578271872 27.99313844503689 22.368072859491075 78-79 22.228216186971892 27.33898733902173 28.006617920674522 22.42617855333186 80-81 22.234309716533225 27.419313476789892 27.959605272076328 22.386771534600555 82-83 22.33009654601959 27.388785520502708 28.013138007708577 22.267979925769126 84-85 22.422351341470826 27.379184349469526 27.91150919366419 22.28695511539546 86-87 22.216391658564355 27.430024177956767 27.976814600027026 22.376769563451845 88-89 22.32397080399097 27.394116474457913 27.902381639162527 22.37953108238859 90-91 22.356027746117256 27.533993807854905 27.815559474760377 22.29441897126746 92-93 22.415941129400903 27.504721357010286 27.81287225361067 22.26646525997814 94-95 22.311377372917534 27.55442410986885 27.798588745629726 22.33560977158389 96-97 22.382275504741724 27.594816269169296 27.909325426673746 22.11358279941523 98-99 23.467450698877986 29.523279488811788 28.13489939855528 18.874370413754946 100 22.383506949298244 30.40128582888239 22.05119893454977 25.164008287269596 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1947.0 1 1833.5 2 2250.5 3 3035.0 4 3945.5 5 5484.5 6 6896.5 7 8985.0 8 11407.0 9 12555.5 10 12327.0 11 11883.5 12 12810.0 13 15677.5 14 21256.0 15 27398.0 16 31406.0 17 33102.5 18 32429.5 19 29766.0 20 26572.5 21 24392.5 22 24664.0 23 28280.0 24 35277.5 25 45513.5 26 59193.0 27 75038.0 28 89916.0 29 105603.5 30 122084.0 31 138314.5 32 156202.0 33 173897.5 34 191551.5 35 208291.5 36 225636.5 37 242223.5 38 253654.5 39 262472.0 40 272445.5 41 281598.0 42 290130.5 43 306203.5 44 319632.0 45 325272.5 46 325993.0 47 321354.0 48 317865.0 49 314100.5 50 307918.5 51 300192.5 52 289096.0 53 272815.5 54 255679.5 55 238496.0 56 219471.0 57 198310.5 58 176648.5 59 154453.5 60 129793.5 61 104859.0 62 82149.5 63 63167.5 64 47576.0 65 35132.5 66 25693.0 67 19336.0 68 14528.0 69 10471.5 70 7647.5 71 5648.5 72 4076.5 73 2736.0 74 1849.0 75 1200.0 76 694.0 77 405.5 78 258.0 79 156.0 80 94.0 81 57.0 82 35.5 83 25.5 84 22.0 85 18.5 86 18.0 87 16.0 88 11.5 89 8.5 90 5.5 91 3.0 92 1.5 93 0.5 94 0.0 95 0.5 96 0.5 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.004072540457284747 6 2.749946932571694E-4 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 6.547492696599272E-6 14-15 6.547492696599272E-6 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 2.627612635243222E-5 34-35 1.2510601088290606E-4 36-37 1.1233196129754252E-4 38-39 1.3284903659871393E-4 40-41 1.068981581915023E-4 42-43 1.344121340822867E-4 44-45 1.6241399164055185E-4 46-47 2.0468720043175354E-5 48-49 3.0267540985861967E-4 50-51 3.8818376924637657E-4 52-53 3.699910971764862E-4 54-55 0.001982511994549076 56-57 0.003123602878304432 58-59 0.0018773097423310293 60-61 0.0033023096094403747 62-63 0.001842290102956455 64-65 0.0024642068471314293 66-67 6.418750424227758E-4 68-69 5.51346735181681E-4 70-71 3.387351809003942E-4 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 8.189898857206083E-6 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 66.0 20-21 309.0 22-23 680.0 24-25 756.0 26-27 1872.0 28-29 4585.0 30-31 12984.0 32-33 16682.0 34-35 23256.0 36-37 36831.0 38-39 44005.0 40-41 43220.0 42-43 48625.0 44-45 58846.0 46-47 60997.0 48-49 56612.0 50-51 51659.0 52-53 49464.0 54-55 52338.0 56-57 54189.0 58-59 54890.0 60-61 56375.0 62-63 55342.0 64-65 58645.0 66-67 64858.0 68-69 67390.0 70-71 76375.0 72-73 57556.0 74-75 56273.0 76-77 58697.0 78-79 60096.0 80-81 60650.0 82-83 57195.0 84-85 56106.0 86-87 58078.0 88-89 60135.0 90-91 60633.0 92-93 60821.0 94-95 72432.0 96-97 233030.0 98-99 518125.0 100-101 5114833.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.18449967192925 #Duplication Level Percentage of deduplicated Percentage of total 1 89.96731870148503 76.63821030411006 2 6.9968901085680075 11.920531663156728 3 1.6679293108639557 4.262451715022754 4 0.6252961188077643 2.130621481097545 5 0.29748308697741743 1.2670473962516158 6 0.1452170096352451 0.7422142985779249 7 0.08982919556599657 0.5356438556154913 8 0.050919153466761465 0.3470018089427405 9 0.03279173816919429 0.2514013028384149 >10 0.12343741407250576 1.6264568527520267 >50 0.002289273141204285 0.12909940959583585 >100 4.990985548198607E-4 0.07704339193564438 >500 7.484302388154514E-5 0.04851729122673942 >1k 2.4947668276515706E-5 0.0237592288764997 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 5.2379941572794174E-5 0.0 0.0 0.0 3 0.0 5.2379941572794174E-5 0.0 0.0 0.0 4 0.0 6.547492696599271E-5 0.0 0.0 0.0 5 0.0 6.547492696599271E-5 0.0 0.0 0.0 6 9.16648977523898E-5 6.547492696599271E-5 0.0 0.0 0.0 7 1.0475988314558835E-4 6.547492696599271E-5 0.0 0.0 0.0 8 1.0475988314558835E-4 1.0475988314558835E-4 0.0 0.0 0.0 9 1.0475988314558835E-4 1.4404483932518397E-4 0.0 0.0 2.6189970786397087E-5 10-11 1.0475988314558835E-4 1.4404483932518397E-4 0.0 0.0 2.6189970786397087E-5 12-13 1.0475988314558835E-4 1.4404483932518397E-4 0.0 0.0 3.273746348299636E-5 14-15 1.1785486853878688E-4 2.553522151673716E-4 0.0 0.0 8.511740505579054E-5 16-17 1.9642478089797815E-4 2.6189970786397084E-4 0.0 0.0 1.0475988314558835E-4 18-19 1.9642478089797815E-4 2.749946932571694E-4 0.0 0.0 1.1785486853878688E-4 20-21 2.0297227359457743E-4 2.8808967865036794E-4 0.0 1.3094985393198544E-5 1.2440236123538616E-4 22-23 2.2261475168437522E-4 3.3392212752656283E-4 0.0 1.9642478089797815E-5 1.4404483932518397E-4 24-25 2.3570973707757377E-4 3.6011209831296E-4 0.0 3.928495617959563E-5 1.636873174149818E-4 26-27 2.3570973707757377E-4 3.7975457640275777E-4 0.0 6.547492696599271E-5 1.7023481011158107E-4 28-29 2.3570973707757377E-4 3.8630206909935703E-4 0.0 4.3868201067215123E-4 1.7678230280818033E-4 30-31 2.3570973707757377E-4 4.452295033687505E-4 0.0 0.0011654536999946702 1.9642478089797815E-4 32-33 2.4225722977417306E-4 4.648719814585483E-4 0.0 0.002985656669649268 2.095197662911767E-4 34-35 2.749946932571694E-4 5.761793573007359E-4 0.0 0.005454061416267193 2.2261475168437525E-4 36-37 2.749946932571694E-4 6.809392404463243E-4 0.0 0.009159942282542381 2.2261475168437525E-4 38-39 2.749946932571694E-4 6.809392404463243E-4 0.0 0.015255657983076303 2.2261475168437525E-4 40-41 3.0118466404356647E-4 8.118890943783096E-4 0.0 0.021259708785857836 2.291622443809745E-4 42-43 3.0118466404356647E-4 8.315315724681075E-4 0.0 0.02732268702290876 2.3570973707757377E-4 44-45 3.077321567401658E-4 9.559339337034936E-4 0.0 0.03407969948579921 2.3570973707757377E-4 46-47 3.1427964943676504E-4 0.0010737888022422806 0.0 0.04219859042958231 2.3570973707757377E-4 48-49 3.1427964943676504E-4 0.0010803362949388798 0.0 0.04996391676774904 2.3570973707757377E-4 50-51 3.3392212752656283E-4 0.0012571185977470602 0.0 0.057310203573333426 2.3570973707757377E-4 52-53 3.4046962022316214E-4 0.0012964035539266559 0.0 0.06485946265251238 2.488047224707723E-4 54-55 3.4046962022316214E-4 0.0012964035539266559 0.0 0.07231050934124236 2.6189970786397084E-4 56-57 3.4046962022316214E-4 0.0013094985393198543 0.0 0.07942763390244575 2.6189970786397084E-4 58-59 3.4046962022316214E-4 0.0013094985393198543 0.0 0.08666261333218796 2.6189970786397084E-4 60-61 3.5356460561636067E-4 0.0013160460320164537 0.0 0.09338688833159542 2.6189970786397084E-4 62-63 3.928495617959563E-4 0.0013422360028028505 0.0 0.09999985595516067 3.0118466404356647E-4 64-65 3.928495617959563E-4 0.0015059233202178324 0.0 0.10631163891468237 3.0118466404356647E-4 66-67 3.928495617959563E-4 0.0015059233202178324 0.0 0.1122502147904979 3.0118466404356647E-4 68-69 3.928495617959563E-4 0.0015583032617906265 0.0 0.11796617591462907 3.0118466404356647E-4 70-71 3.928495617959563E-4 0.001591040725273623 0.0 0.12243156593370978 3.077321567401658E-4 72-73 4.321345179755519E-4 0.0015975882179702222 0.0 0.12637315653706255 3.1427964943676504E-4 74-75 4.452295033687505E-4 0.0016368731741498179 0.0 0.12928679078704922 3.1427964943676504E-4 76-77 4.5177699606534975E-4 0.001689253115722612 0.0 0.1322135200224291 3.1427964943676504E-4 78-79 4.58324488761949E-4 0.0017416330572954063 0.0 0.13420395780219527 3.1427964943676504E-4 80-81 4.58324488761949E-4 0.0017416330572954063 0.0 0.1347343047106198 3.3392212752656283E-4 82-83 4.58324488761949E-4 0.0017416330572954063 0.0 0.13525155663365113 3.666595910095592E-4 84-85 4.58324488761949E-4 0.0017481805499920055 0.0 0.13540869645836953 3.666595910095592E-4 86-87 4.714194741551476E-4 0.001780918013475002 0.0 0.13550690884881852 3.666595910095592E-4 88 4.845144595483461E-4 0.0018463929404409945 0.0 0.13552000383421173 3.666595910095592E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10060 0.0 50.612236 1 GTATCAA 18780 0.0 37.993057 1 CTTATAC 6360 0.0 32.9406 1 TCAACGC 23100 0.0 30.664845 4 ATCAACG 23020 0.0 30.62222 3 CAACGCA 23430 0.0 30.123009 5 TATCAAC 23910 0.0 29.787607 2 AACGCAG 24365 0.0 28.983335 6 TATACAC 9390 0.0 26.380257 3 ACGCAGA 27895 0.0 25.407782 7 CGCAGAG 28015 0.0 25.207008 8 TTATACA 9585 0.0 23.82804 2 ACCGAAC 1005 0.0 23.066078 8 TGGTATC 4600 0.0 23.051964 2 GTGGTAT 5140 0.0 22.133574 1 GCAGAGT 32455 0.0 21.824705 9 ACATCTC 10805 0.0 20.81865 8 GAGTACT 19795 0.0 20.645601 12-13 ACACATC 11150 0.0 20.405624 6 TACACAT 12545 0.0 19.711544 5 >>END_MODULE