##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138753_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6825368 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 24.683964000182847 25.0 18.0 31.0 18.0 33.0 2 31.472362369325726 32.0 31.0 33.0 27.0 33.0 3 31.89843038499902 33.0 31.0 33.0 29.0 34.0 4 32.62104856470743 33.0 33.0 34.0 31.0 34.0 5 32.99259160824735 34.0 33.0 34.0 32.0 34.0 6 37.06787575409853 38.0 38.0 38.0 36.0 38.0 7 37.11670564869176 38.0 38.0 38.0 36.0 38.0 8 37.206162363699654 38.0 38.0 38.0 36.0 38.0 9 37.30142037762653 38.0 38.0 38.0 37.0 38.0 10-11 37.32688794215931 38.0 38.0 38.0 37.0 38.0 12-13 37.351113522377105 38.0 38.0 38.0 37.0 38.0 14-15 37.35403124051333 38.0 38.0 38.0 37.0 38.0 16-17 37.34474558734415 38.0 38.0 38.0 37.0 38.0 18-19 37.231406204031785 38.0 38.0 38.0 36.5 38.0 20-21 37.342456407863494 38.0 38.0 38.0 37.0 38.0 22-23 37.3609795335298 38.0 38.0 38.0 37.0 38.0 24-25 37.367814926679415 38.0 38.0 38.0 37.0 38.0 26-27 37.33912230568514 38.0 38.0 38.0 37.0 38.0 28-29 37.31409547733371 38.0 38.0 38.0 37.0 38.0 30-31 37.31668127009844 38.0 38.0 38.0 37.0 38.0 32-33 37.30361926228511 38.0 38.0 38.0 37.0 38.0 34-35 37.28410114534019 38.0 38.0 38.0 37.0 38.0 36-37 37.259252728877044 38.0 38.0 38.0 37.0 38.0 38-39 37.22587931710498 38.0 38.0 38.0 37.0 38.0 40-41 37.22410086762073 38.0 38.0 38.0 37.0 38.0 42-43 37.20169017091278 38.0 38.0 38.0 37.0 38.0 44-45 37.16871394839879 38.0 38.0 38.0 36.5 38.0 46-47 37.131461104204945 38.0 38.0 38.0 36.0 38.0 48-49 37.09772343884393 38.0 38.0 38.0 36.0 38.0 50-51 37.06829884388871 38.0 38.0 38.0 36.0 38.0 52-53 37.04600353044803 38.0 38.0 38.0 36.0 38.0 54-55 37.029834119120416 38.0 38.0 38.0 36.0 38.0 56-57 37.017194438261185 38.0 38.0 38.0 36.0 38.0 58-59 37.00350767316894 38.0 38.0 38.0 36.0 38.0 60-61 37.0011064503201 38.0 38.0 38.0 36.0 38.0 62-63 36.99559199430176 38.0 38.0 38.0 36.0 38.0 64-65 36.99987943061839 38.0 38.0 38.0 36.0 38.0 66-67 36.99233829448487 38.0 38.0 38.0 36.0 38.0 68-69 36.99413149070605 38.0 38.0 38.0 36.0 38.0 70-71 36.98495333292121 38.0 38.0 38.0 36.0 38.0 72-73 36.95701584357029 38.0 38.0 38.0 36.0 38.0 74-75 36.97617146821415 38.0 38.0 38.0 36.0 38.0 76-77 36.9640907030514 38.0 38.0 38.0 36.0 38.0 78-79 36.95244785478056 38.0 38.0 38.0 36.0 38.0 80-81 36.92868602190575 38.0 38.0 38.0 35.5 38.0 82-83 36.91751415353673 38.0 38.0 38.0 35.5 38.0 84-85 36.8979896491679 38.0 38.0 38.0 35.0 38.0 86-87 36.86075052614689 38.0 38.0 38.0 35.0 38.0 88-89 36.8439988876232 38.0 38.0 38.0 35.0 38.0 90-91 36.851461017130035 38.0 38.0 38.0 35.0 38.0 92-93 36.81496112918112 38.0 38.0 38.0 35.0 38.0 94-95 36.75889266994044 38.0 38.0 38.0 35.0 38.0 96-97 36.770687003009805 38.0 38.0 38.0 35.0 38.0 98-99 36.79859801321007 38.0 38.0 38.0 35.0 38.0 100 35.19003112012419 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 3.0 18 10.0 19 30.0 20 82.0 21 223.0 22 604.0 23 1541.0 24 3425.0 25 7220.0 26 12410.0 27 19986.0 28 31227.0 29 45363.0 30 61813.0 31 81296.0 32 105285.0 33 141390.0 34 204479.0 35 352341.0 36 975716.0 37 4780924.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.32448243083743 19.472063630854773 15.825417765020141 23.378036173287654 2 14.595330244464474 20.74399504905816 41.98024194446365 22.680432762013712 3 18.493610893947405 25.65309299073691 30.442314612193805 25.41098150312188 4 12.570208668602193 17.75754801792372 38.82406047556703 30.848182837907057 5 13.577569597210747 37.187288371761824 35.47490731946893 13.760234711558494 6 30.09274249672178 37.710183360560265 18.66365827393467 13.533415868783285 7 26.44946030748818 32.492885365301916 23.08401539667898 17.973638930530925 8 24.085675673458194 37.05401672114969 21.060901038596015 17.799406566796105 9 25.200252938742647 17.12842443074132 21.472527195603224 36.19879543491281 10-11 24.203156518447063 26.813638473412716 28.78089503745439 20.202309970685832 12-13 24.99621265842369 24.275702057383572 29.045774528201264 21.68231075599147 14-15 22.11804141813913 25.62361848088169 26.743624188999654 25.51471591197953 16-17 21.69899850088669 28.761086581705193 27.413254494116657 22.12666042329146 18-19 21.677541782362503 27.70157594433004 29.28373971923565 21.337142554071807 20-21 22.40667958433909 26.93081231159184 29.303222214489526 21.359285889579542 22-23 22.143303508960866 26.86359104199222 29.176229000777294 21.816876448269625 24-25 21.94455749779378 26.95203245093108 29.288503884741026 21.81490616653412 26-27 21.91081578828202 27.12818332642361 29.17870006077331 21.782300824521055 28-29 21.81584080085367 27.123089796924443 29.277727257701958 21.783342144519928 30-31 22.081795844573694 27.042376522775864 29.152466610460582 21.723361022189863 32-33 21.96879741965099 27.092114410049035 29.112717763967886 21.82637040633209 34-35 22.02282587592291 27.137226566178406 29.06743427821835 21.772513279680336 36-37 21.983908565553428 27.12543430475785 29.060114278285944 21.830542851402775 38-39 21.8189190815838 27.200431201939786 29.172743709356357 21.807906007120057 40-41 22.09676563905787 27.057541880313064 29.01973313536518 21.825959345263886 42-43 22.00154693842228 27.14545465726105 28.883765590684053 21.969232813632615 44-45 22.052835865676972 27.289100402995647 28.738930900931166 21.91913283039621 46-47 22.108984673930447 27.23306947279945 28.50463133243614 22.153314520833963 48-49 22.05457074673989 27.307063135983267 28.50376074656297 22.13460537071387 50-51 22.05345779579102 27.485083215167727 28.39652526024069 22.064933728800565 52-53 22.177362958299124 27.489091507154846 28.27817110806754 22.055374426478487 54-55 22.16050395354178 27.392709109628953 28.28548618174262 22.16130075508664 56-57 22.188802716647878 27.501709586672956 28.202590956972852 22.106896739706315 58-59 22.11962151885314 27.564919418164553 28.29359245370449 22.02186660927782 60-61 22.215317718138827 27.54798949621386 28.266225544685554 21.970467240961764 62-63 22.15365960548807 27.638434896382513 28.212565855098642 21.99533964303077 64-65 22.13781705583033 27.583087980462462 28.20104521942482 22.07804974428239 66-67 22.18336171772334 27.565422353439555 28.110306344945542 22.14090958389156 68-69 22.141533899615524 27.52852526465835 28.211696393368314 22.118244442357813 70-71 22.158389846941756 27.341504563590096 28.23870790367053 22.26139768579762 72-73 22.24971149107075 27.333522686071305 28.174322529453367 22.24244329340458 74-75 22.105511998692844 27.49116690680707 28.12903000382154 22.274291090678545 76-77 22.25424375878537 27.4183348008768 28.043551709870357 22.28386973046747 78-79 22.176168275184338 27.440208219293748 27.98941741280268 22.394206092719234 80-81 22.21238885958022 27.485638509968247 27.971234254475956 22.330738375975574 82-83 22.26147295930152 27.494809480083465 28.04812436114579 22.195593199469226 84-85 22.38195177572977 27.450894918772 27.94577649275537 22.221376812742857 86-87 22.27188510609047 27.477970976342814 28.011802572629747 22.23834134493697 88-89 22.292351651529692 27.497488519490194 27.94235631477987 22.267803514200246 90-91 22.301622087246972 27.542025235804036 27.9094931362798 22.246859540669195 92-93 22.34870592419108 27.496356586614105 27.966919650298035 22.188017838896776 94-95 22.233193301516998 27.63213188646592 27.88071409313076 22.25396071888632 96-97 22.34069641755541 27.708121392842592 27.974667292197953 21.976514897404048 98-99 23.427053629204075 29.60394180406432 28.15429032522689 18.814714241504717 100 22.327890116942292 30.481827134379024 22.168134748475847 25.022148000202836 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1644.0 1 1514.0 2 1914.0 3 2644.0 4 3258.0 5 4318.0 6 5502.0 7 7634.0 8 9953.5 9 10890.5 10 10489.0 11 10083.5 12 11122.0 13 13463.0 14 17755.0 15 22691.5 16 26059.5 17 27457.5 18 26918.0 19 24920.5 20 22851.5 21 21874.5 22 22917.5 23 26550.0 24 32592.5 25 41927.0 26 54386.0 27 67646.5 28 80783.0 29 95910.0 30 111021.0 31 125274.5 32 140364.0 33 155196.0 34 170019.0 35 183948.5 36 198390.5 37 212667.5 38 223906.5 39 232426.0 40 242067.0 41 252549.0 42 260603.5 43 268853.0 44 274213.0 45 277756.0 46 280719.5 47 280795.5 48 280391.5 49 277807.5 50 272775.5 51 264348.5 52 253098.0 53 240412.0 54 225549.0 55 209533.5 56 192971.5 57 175563.0 58 156456.5 59 136233.5 60 114907.5 61 93387.0 62 73765.5 63 57054.5 64 43177.5 65 32126.5 66 24036.0 67 18095.0 68 13509.5 69 10066.0 70 7393.0 71 5274.5 72 3753.5 73 2547.0 74 1665.5 75 1039.0 76 620.0 77 355.0 78 220.0 79 147.5 80 103.0 81 62.5 82 36.0 83 22.5 84 16.5 85 12.0 86 8.0 87 7.0 88 5.5 89 3.0 90 2.5 91 2.5 92 1.5 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.004541879646635903 6 2.6372204399821374E-4 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 1.465122466656743E-5 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 6.612206088357734E-5 34-35 1.2516350403033846E-4 36-37 1.6988082417017096E-4 38-39 1.7810870374934405E-4 40-41 7.459606417738109E-5 42-43 1.724816867569086E-4 44-45 1.5092316682684646E-4 46-47 6.842194291709351E-5 48-49 4.365505886310279E-4 50-51 3.084918711620719E-4 52-53 4.579302932298421E-4 54-55 0.0021872505167379345 56-57 0.0034611393110932586 58-59 0.0020522008586440084 60-61 0.0036317170702435545 62-63 0.0020822677455439873 64-65 0.002874513711227972 66-67 8.079060543990077E-4 68-69 6.418961150389758E-4 70-71 3.818472474873206E-4 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 9.127929483458685E-6 94-95 9.217672194873389E-6 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 49.0 20-21 252.0 22-23 495.0 24-25 613.0 26-27 1409.0 28-29 3468.0 30-31 10501.0 32-33 13328.0 34-35 18850.0 36-37 30121.0 38-39 35045.0 40-41 34570.0 42-43 39246.0 44-45 48010.0 46-47 49141.0 48-49 46383.0 50-51 41866.0 52-53 40544.0 54-55 43834.0 56-57 45942.0 58-59 45999.0 60-61 45685.0 62-63 43650.0 64-65 46919.0 66-67 50552.0 68-69 52339.0 70-71 53373.0 72-73 47363.0 74-75 47101.0 76-77 49250.0 78-79 51058.0 80-81 50597.0 82-83 48159.0 84-85 47737.0 86-87 48477.0 88-89 51045.0 90-91 51821.0 92-93 51912.0 94-95 62284.0 96-97 210548.0 98-99 472406.0 100-101 4693426.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.57540942880829 #Duplication Level Percentage of deduplicated Percentage of total 1 90.5772809939394 78.41765186998518 2 6.70488636037283 11.609565636458202 3 1.582012747699664 4.108902040610772 4 0.5452311943005955 1.8881445551972873 5 0.24617517717593157 1.0656358377607846 6 0.11492310364153259 0.5969708850357032 7 0.07124046877597652 0.43173709265262794 8 0.04134445847601384 0.2863530736138609 9 0.028109433939485718 0.21902271769107143 >10 0.08669098280052111 1.1713327387430779 >50 0.0016852545457544195 0.09455388971534057 >100 3.4303953551825307E-4 0.05818916630013717 >500 7.678479683950181E-5 0.05194049623594885 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.930244933313486E-5 0.0 1.465122466656743E-5 0.0 3 0.0 2.930244933313486E-5 0.0 1.465122466656743E-5 0.0 4 0.0 7.325612333283714E-5 0.0 2.930244933313486E-5 0.0 5 0.0 7.325612333283714E-5 0.0 2.930244933313486E-5 0.0 6 5.860489866626972E-5 7.325612333283714E-5 0.0 2.930244933313486E-5 0.0 7 5.860489866626972E-5 7.325612333283714E-5 0.0 2.930244933313486E-5 0.0 8 5.860489866626972E-5 7.325612333283714E-5 0.0 2.930244933313486E-5 0.0 9 5.860489866626972E-5 1.1720979733253944E-4 0.0 4.3953673999702286E-5 0.0 10-11 5.860489866626972E-5 1.1720979733253944E-4 0.0 5.860489866626972E-5 0.0 12-13 8.058173566612086E-5 1.1720979733253944E-4 0.0 5.860489866626972E-5 0.0 14-15 9.523296033268829E-5 1.6848908366552543E-4 0.0 7.325612333283714E-5 0.0 16-17 1.3186102199910687E-4 1.8314030833209286E-4 0.0 7.325612333283714E-5 0.0 18-19 1.3186102199910687E-4 2.2709398233179516E-4 0.0 7.325612333283714E-5 0.0 20-21 1.3186102199910687E-4 2.783732686647812E-4 0.0 7.325612333283714E-5 0.0 22-23 1.3186102199910687E-4 3.0035010566463227E-4 0.0 7.325612333283714E-5 0.0 24-25 1.4651224666567428E-4 3.223269426644834E-4 0.0 9.523296033268829E-5 0.0 26-27 1.4651224666567428E-4 3.223269426644834E-4 0.0 1.1720979733253944E-4 0.0 28-29 1.4651224666567428E-4 3.223269426644834E-4 0.0 3.223269426644834E-4 0.0 30-31 1.611634713322417E-4 3.8093184133075316E-4 0.0 0.0010109345019931526 0.0 32-33 1.611634713322417E-4 3.955830659973206E-4 0.0 0.0026298948276488538 0.0 34-35 1.611634713322417E-4 4.6151357699687404E-4 0.0 0.00479095046596755 0.0 36-37 1.611634713322417E-4 5.347697003297111E-4 0.0 0.008021545504945667 0.0 38-39 1.611634713322417E-4 5.420953126629949E-4 0.0 0.012644006887247691 0.0 40-41 1.611634713322417E-4 6.007002113292645E-4 0.0 0.01779391235754614 0.0 42-43 1.611634713322417E-4 6.080258236625482E-4 0.0 0.022892538541511607 0.0 44-45 1.6848908366552543E-4 6.886075593286691E-4 0.0 0.028965471165803808 0.0 46-47 1.7581469599880914E-4 8.058173566612086E-4 0.0 0.03541201001909347 0.0 48-49 1.7581469599880914E-4 8.131429689944923E-4 0.0 0.04204168918071524 0.0 50-51 1.9046592066537658E-4 9.010503169938969E-4 0.0 0.048488228034004904 0.0 52-53 2.05117145331944E-4 9.083759293271806E-4 0.0 0.054649068006296514 0.0 54-55 2.05117145331944E-4 9.083759293271806E-4 0.0 0.060780605529254975 0.0 56-57 2.1244275766522773E-4 9.230271539937481E-4 0.0 0.06587923171322044 0.0 58-59 2.2709398233179516E-4 9.376783786603155E-4 0.0 0.07073611269018755 0.0 60-61 2.783732686647812E-4 9.96283277326585E-4 0.0 0.07591532060981913 0.0 62-63 2.9302449333134856E-4 0.0010402369513262874 0.0 0.08064034056478714 0.0 64-65 3.0035010566463227E-4 0.0012233772596583802 0.0 0.08524082511008929 0.0 66-67 3.07675717997916E-4 0.0012453540966582315 0.0 0.08981200720605834 0.0 68-69 3.07675717997916E-4 0.0012746565459913661 0.0 0.09485935410369081 0.0 70-71 3.516293919976183E-4 0.0012893077706579337 0.0 0.0989616970103297 0.0 72-73 3.58955004330902E-4 0.0012893077706579337 0.0 0.10214101276297483 0.0 74-75 3.662806166641857E-4 0.0013479126693242034 0.0 0.10468300024262428 0.0 76-77 3.662806166641857E-4 0.0013991919556571894 0.0 0.10734952313193954 0.0 78-79 3.662806166641857E-4 0.0014211687926570407 0.0 0.10896115784526197 0.0 80-81 3.8093184133075316E-4 0.0014577968543234591 0.0 0.10950325315792496 0.0 82-83 3.8093184133075316E-4 0.0014870993036565942 0.0 0.10978895203892303 0.0 84-85 3.8093184133075316E-4 0.0014944249159898778 0.0 0.10991348744858885 0.0 86-87 3.8093184133075316E-4 0.0015090761406564453 0.0 0.1099794179595884 0.0 88 3.8093184133075316E-4 0.0015530298146561475 0.0 0.10998674357192169 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8690 0.0 49.71104 1 GTATCAA 15525 0.0 37.249195 1 TCAACGC 19045 0.0 30.296415 4 ATCAACG 19070 0.0 30.188602 3 CAACGCA 19600 0.0 29.394365 5 TATCAAC 20045 0.0 28.957748 2 AACGCAG 20215 0.0 28.520258 6 ACGCAGA 23095 0.0 24.963717 7 CGCAGAG 23645 0.0 24.401348 8 GTGGTAT 4260 0.0 23.065258 1 GTACATG 18080 0.0 21.331497 1 GCAGAGT 27415 0.0 21.061562 9 TGGTATC 4235 0.0 20.952822 2 TACATGG 18175 0.0 20.696049 2 ACATGGG 18315 0.0 19.734293 3 GAGTACT 17850 0.0 19.617033 12-13 CAGAGTA 26855 0.0 18.938068 10-11 AGAGTAC 25080 0.0 18.811438 10-11 GTACTTT 19665 0.0 17.729616 14-15 CATGGGG 13440 0.0 17.391481 4 >>END_MODULE