##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138748_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6954901 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.18762855143445 33.0 32.0 34.0 31.0 34.0 2 32.007662078870716 33.0 32.0 33.0 30.0 34.0 3 32.05200217803244 33.0 33.0 33.0 29.0 34.0 4 32.486064575182304 33.0 33.0 34.0 31.0 34.0 5 32.80282465559179 33.0 33.0 34.0 31.0 34.0 6 36.80748237825384 38.0 37.0 38.0 35.0 38.0 7 37.0805572933389 38.0 38.0 38.0 36.0 38.0 8 37.11968725363596 38.0 38.0 38.0 36.0 38.0 9 37.20558955476145 38.0 38.0 38.0 36.0 38.0 10-11 37.251748730859006 38.0 38.0 38.0 36.5 38.0 12-13 37.286664253021 38.0 38.0 38.0 37.0 38.0 14-15 37.314115398623215 38.0 38.0 38.0 37.0 38.0 16-17 37.31102175286176 38.0 38.0 38.0 37.0 38.0 18-19 37.18585311279053 38.0 38.0 38.0 36.5 38.0 20-21 37.301866542647346 38.0 38.0 38.0 37.0 38.0 22-23 37.32212672896104 38.0 38.0 38.0 37.0 38.0 24-25 37.32671996035724 38.0 38.0 38.0 37.0 38.0 26-27 37.29460127530889 38.0 38.0 38.0 37.0 38.0 28-29 37.271920790684185 38.0 38.0 38.0 37.0 38.0 30-31 37.2759636664521 38.0 38.0 38.0 37.0 38.0 32-33 37.25950217605748 38.0 38.0 38.0 37.0 38.0 34-35 37.24674417250989 38.0 38.0 38.0 37.0 38.0 36-37 37.223958945810054 38.0 38.0 38.0 37.0 38.0 38-39 37.1909217753607 38.0 38.0 38.0 36.5 38.0 40-41 37.18103426102752 38.0 38.0 38.0 36.0 38.0 42-43 37.15381529031433 38.0 38.0 38.0 36.0 38.0 44-45 37.121519864980144 38.0 38.0 38.0 36.0 38.0 46-47 37.08664672638798 38.0 38.0 38.0 36.0 38.0 48-49 37.05593002064131 38.0 38.0 38.0 36.0 38.0 50-51 37.035683482043666 38.0 38.0 38.0 36.0 38.0 52-53 37.01785113249515 38.0 38.0 38.0 36.0 38.0 54-55 37.00248246208817 38.0 38.0 38.0 36.0 38.0 56-57 36.99151274330251 38.0 38.0 38.0 36.0 38.0 58-59 36.97961287834006 38.0 38.0 38.0 36.0 38.0 60-61 36.97529629553124 38.0 38.0 38.0 36.0 38.0 62-63 36.97084722670586 38.0 38.0 38.0 36.0 38.0 64-65 36.97281042263563 38.0 38.0 38.0 36.0 38.0 66-67 36.96610748027054 38.0 38.0 38.0 36.0 38.0 68-69 36.96769070641223 38.0 38.0 38.0 36.0 38.0 70-71 36.95725922049306 38.0 38.0 38.0 36.0 38.0 72-73 36.9321863282467 38.0 38.0 38.0 36.0 38.0 74-75 36.95052448694841 38.0 38.0 38.0 36.0 38.0 76-77 36.937105043414164 38.0 38.0 38.0 36.0 38.0 78-79 36.92519600932789 38.0 38.0 38.0 36.0 38.0 80-81 36.898447202975795 38.0 38.0 38.0 35.0 38.0 82-83 36.88683949868855 38.0 38.0 38.0 35.0 38.0 84-85 36.86676793575037 38.0 38.0 38.0 35.0 38.0 86-87 36.82382703070833 38.0 38.0 38.0 35.0 38.0 88-89 36.805539050664535 38.0 38.0 38.0 35.0 38.0 90-91 36.80928861830693 38.0 38.0 38.0 35.0 38.0 92-93 36.77362656518498 38.0 38.0 38.0 35.0 38.0 94-95 36.71370345848078 38.0 38.0 38.0 34.5 38.0 96-97 36.726892329382395 38.0 38.0 38.0 34.5 38.0 98-99 36.75395265361914 38.0 38.0 38.0 35.0 38.0 100 35.13088229310614 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 8.0 18 18.0 19 42.0 20 79.0 21 228.0 22 718.0 23 1957.0 24 4354.0 25 8224.0 26 14147.0 27 22789.0 28 33801.0 29 48234.0 30 65754.0 31 85297.0 32 109174.0 33 145047.0 34 206676.0 35 342585.0 36 829818.0 37 5035950.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.754124178043654 19.735176676130976 14.103105134063016 24.407594011762352 2 14.591609571437466 20.183766814222086 42.827568645477484 22.397054968862964 3 18.405725688978176 25.815306357344266 29.90317187836319 25.875796075314373 4 12.502895440208277 17.598942098528795 39.22130595388777 30.67685650737516 5 13.485377241152221 37.335564959443936 35.30748845723028 13.871569342173565 6 29.850523510637792 37.72491604088242 18.809070992381887 13.615489456097905 7 26.506372987911693 32.73346378330906 22.990967089251164 17.76919613952808 8 24.162270606008626 36.98141785195792 21.02478525574987 17.831526286283587 9 25.532671133636555 17.065965424957163 21.40464688138623 35.99671656002005 10-11 24.289310516425754 26.91243915621516 28.591197775496735 20.207052551862347 12-13 25.075267067065372 24.474935013453102 28.893099988051592 21.556697931429937 14-15 22.258900593984013 25.71346450510223 26.83866384295046 25.1889710579633 16-17 21.56403088987176 28.86680917528517 27.476099228443367 22.093060706399704 18-19 21.483382725361583 27.776764902908035 29.478413855208004 21.261438516522375 20-21 22.507176961927044 26.95861919293857 29.396815918423176 21.137387926711213 22-23 22.150560250484894 26.86334393996373 29.328745311104964 21.65735049844641 24-25 21.821435894853096 26.988024016721045 29.441902630831052 21.748637457594803 26-27 21.749365207239453 27.15778801225124 29.345993252578644 21.746853527930664 28-29 21.67922760659303 27.242163056350428 29.382015579424653 21.69659375763189 30-31 21.975890506760017 27.057053877839937 29.272194375537403 21.694861239862643 32-33 21.77548262482752 27.247650602144326 29.20014229345013 21.776724479578025 34-35 21.929145577748603 27.255751590548254 29.181062786660377 21.634040045042767 36-37 21.923035607635967 27.14969030096307 29.118093670803518 21.809180420597446 38-39 21.742463716407386 27.333925718518913 29.227170957735865 21.696439607337837 40-41 22.024693385035377 27.21077565842932 29.07090815715569 21.69362279937961 42-43 21.9031776718068 27.239206332418902 28.92904684616871 21.928569149605583 44-45 21.987913929976173 27.409533882187255 28.745960731464464 21.856591456372108 46-47 22.016345750520948 27.425145076688885 28.4713540778348 22.087155094955367 48-49 21.98107230055876 27.504096421202874 28.47642911039087 22.03840216784749 50-51 22.016513592261227 27.75331989198409 28.167307651676076 22.062858864078606 52-53 22.209398471661903 27.726052895727655 27.952980720787934 22.111567911822508 54-55 22.18163354154338 27.63341361585595 27.9961485452271 22.18880429737357 56-57 22.1928106420895 27.74743354232787 27.927184652335047 22.132571163247583 58-59 22.17757547375469 27.782657535575478 27.982274700167427 22.057492290502406 60-61 22.17542432864862 27.733150480310087 28.02335623037104 22.06806896067025 62-63 22.16336032923627 27.746016822213072 28.007997134048924 22.082625714501738 64-65 22.135725827942736 27.684660917894956 27.998448196825144 22.181165057337164 66-67 22.216952960801507 27.72131316877346 27.842251231718006 22.21948263870702 68-69 22.240231078890705 27.672003003462965 27.929678667570673 22.158087250075663 70-71 22.191681459690965 27.470078930688125 28.004987319263098 22.333252290357812 72-73 22.224172168677747 27.53254774068053 27.95975243945791 22.283527651183814 74-75 22.097412621440675 27.688927294998074 27.90338439854355 22.310275685017704 76-77 22.225250094904208 27.635496432980794 27.81157366872048 22.32767980339452 78-79 22.189511788091703 27.65679062153173 27.753476389456694 22.400221200919873 80-81 22.20104028547016 27.732248677239557 27.718418760570625 22.348292276719658 82-83 22.263109739632753 27.680576800106653 27.802439284645565 22.25387417561503 84-85 22.385734565605865 27.664042837426887 27.708929782764553 22.241292814202694 86-87 22.187272405033585 27.7037828534205 27.79304454298112 22.315900198564787 88-89 22.327514555874043 27.690109578625567 27.705764561031348 22.276611304469046 90-91 22.352814974317464 27.76481864700179 27.679398151802904 22.202968226877847 92-93 22.361863848077963 27.746031699734736 27.673460265590304 22.218644186596997 94-95 22.223133078424596 27.84980808157473 27.662329312711716 22.264729527288964 96-97 22.33235930374874 27.911213507415773 27.76632859252024 21.990098596315246 98-99 23.351359592408645 29.872686184179216 27.951332730486182 18.824621492925957 100 22.30913416096487 30.793972833740813 21.89871969689062 24.998173308403697 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2239.0 1 1889.0 2 1701.5 3 2318.0 4 3461.0 5 4843.5 6 5772.0 7 5921.0 8 5698.5 9 5712.0 10 6006.5 11 7181.5 12 9217.0 13 13693.0 14 20876.0 15 28590.0 16 34606.0 17 37077.5 18 37271.5 19 34154.0 20 30236.0 21 27824.5 22 27380.5 23 30876.5 24 37178.0 25 46311.0 26 58953.5 27 73730.0 28 87922.0 29 102969.5 30 117565.5 31 131234.0 32 147504.5 33 164011.0 34 180308.0 35 194874.5 36 209351.5 37 224014.5 38 233942.0 39 242196.0 40 252300.0 41 260074.0 42 264594.0 43 269759.5 44 275172.5 45 280799.5 46 283964.0 47 283959.5 48 283048.5 49 279674.5 50 274487.0 51 267822.5 52 256571.5 53 242650.0 54 228368.0 55 213128.0 56 196525.5 57 177868.5 58 158520.5 59 139061.5 60 118063.5 61 96036.0 62 75585.0 63 58385.5 64 44445.0 65 33226.5 66 24742.0 67 18816.0 68 14439.0 69 10739.5 70 7785.5 71 5583.5 72 3899.0 73 2612.0 74 1697.0 75 1104.5 76 679.5 77 404.0 78 272.5 79 171.5 80 109.0 81 73.5 82 54.5 83 40.0 84 27.0 85 16.0 86 11.5 87 10.5 88 7.5 89 4.0 90 2.0 91 1.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0047592338122426185 6 4.025937968060221E-4 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 4.332049578574607E-5 34-35 1.2303587697222893E-4 36-37 1.2347128028968396E-4 38-39 1.679176286643277E-4 40-41 1.1014379566240515E-4 42-43 1.6248156018929986E-4 44-45 1.63604376952516E-4 46-47 5.247910544416741E-5 48-49 3.0233193915479026E-4 50-51 3.5086817371666345E-4 52-53 4.3842420495423964E-4 54-55 0.0017887850610583582 56-57 0.002855091916017861 58-59 0.0017058989356291223 60-61 0.003090065668649406 62-63 0.001612750114988285 64-65 0.0023889411810506934 66-67 6.080919525840706E-4 68-69 5.070076222053964E-4 70-71 2.887508604775642E-4 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 835.0 20-21 2646.0 22-23 1718.0 24-25 1662.0 26-27 2471.0 28-29 4835.0 30-31 12096.0 32-33 15445.0 34-35 21250.0 36-37 33309.0 38-39 39836.0 40-41 38619.0 42-43 43730.0 44-45 53295.0 46-47 54876.0 48-49 51308.0 50-51 65807.0 52-53 43037.0 54-55 46180.0 56-57 49235.0 58-59 49691.0 60-61 48942.0 62-63 45969.0 64-65 48446.0 66-67 52071.0 68-69 53590.0 70-71 52901.0 72-73 49359.0 74-75 49055.0 76-77 52135.0 78-79 54011.0 80-81 54301.0 82-83 50157.0 84-85 48803.0 86-87 51002.0 88-89 55201.0 90-91 57717.0 92-93 56595.0 94-95 62836.0 96-97 209567.0 98-99 476083.0 100-101 4694279.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.26622492071486 #Duplication Level Percentage of deduplicated Percentage of total 1 89.69595047733206 76.48035087877497 2 7.3147856552259 12.474083178506204 3 1.7174450032315542 4.393201558034987 4 0.591313653515781 2.0167633191746495 5 0.2710668641149876 1.1556424102090692 6 0.1385053544244522 0.7085897221847202 7 0.08453963513257894 0.5045862880750752 8 0.04573151554986297 0.3119482952671828 9 0.032913035942053206 0.2525733292912813 >10 0.10429637549017286 1.3214292073289564 >50 0.0025443383119478093 0.14115891478770295 >100 7.493051336363614E-4 0.10940395944874573 >500 1.0585780770245459E-4 0.07053888254489211 >1k 5.2928787294833065E-5 0.05973005637164943 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.875669977185872E-5 0.0 0.0 0.0 3 0.0 2.875669977185872E-5 0.0 0.0 0.0 4 0.0 1.1502679908743489E-4 0.0 0.0 1.437834988592936E-5 5 0.0 1.1502679908743489E-4 0.0 0.0 1.437834988592936E-5 6 5.751339954371744E-5 1.1502679908743489E-4 0.0 0.0 1.437834988592936E-5 7 5.751339954371744E-5 1.1502679908743489E-4 0.0 0.0 1.437834988592936E-5 8 5.751339954371744E-5 1.2940514897336424E-4 0.0 0.0 1.437834988592936E-5 9 5.751339954371744E-5 2.444319480607991E-4 0.0 2.875669977185872E-5 1.437834988592936E-5 10-11 5.751339954371744E-5 2.444319480607991E-4 0.0 6.470257448668212E-5 1.437834988592936E-5 12-13 5.751339954371744E-5 2.444319480607991E-4 0.0 7.18917494296468E-5 1.437834988592936E-5 14-15 5.751339954371744E-5 3.2351287243341065E-4 0.0 7.908092437261148E-5 1.437834988592936E-5 16-17 1.1502679908743489E-4 3.3070204737637533E-4 0.0 1.0064844920150553E-4 1.437834988592936E-5 18-19 1.1502679908743489E-4 3.3789122231934E-4 0.0 1.1502679908743489E-4 1.437834988592936E-5 20-21 1.1502679908743489E-4 3.4508039726230465E-4 0.0 1.2940514897336424E-4 1.437834988592936E-5 22-23 1.1502679908743489E-4 3.8821544692009275E-4 0.0 1.3659432391632893E-4 1.437834988592936E-5 24-25 1.1502679908743489E-4 4.241613216349161E-4 0.0 1.437834988592936E-4 1.437834988592936E-5 26-27 1.1502679908743489E-4 4.457288464638102E-4 0.0 2.0129689840301106E-4 1.437834988592936E-5 28-29 1.2940514897336424E-4 4.457288464638102E-4 0.0 3.8821544692009275E-4 1.437834988592936E-5 30-31 1.2940514897336424E-4 4.744855462356689E-4 0.0 0.0011071329412165609 1.437834988592936E-5 32-33 1.2940514897336424E-4 4.744855462356689E-4 0.0 0.002480265355322815 1.437834988592936E-5 34-35 1.2940514897336424E-4 5.319989457793863E-4 0.0 0.0043925858901514205 1.437834988592936E-5 36-37 1.2940514897336424E-4 5.895123453231038E-4 0.0 0.007102904843649104 1.437834988592936E-5 38-39 1.2940514897336424E-4 6.038906952090332E-4 0.0 0.01155300413334424 1.437834988592936E-5 40-41 1.2940514897336424E-4 6.757824446386799E-4 0.0 0.01586650909912305 1.437834988592936E-5 42-43 1.2940514897336424E-4 6.97349969467574E-4 0.0 0.020309419213875222 2.156752482889404E-5 44-45 1.2940514897336424E-4 7.620525439542561E-4 0.0 0.025104598900832664 2.875669977185872E-5 46-47 1.2940514897336424E-4 7.908092437261149E-4 0.0 0.030712155356345115 2.875669977185872E-5 48-49 1.2940514897336424E-4 7.908092437261149E-4 0.0 0.036621657159462084 2.875669977185872E-5 50-51 1.2940514897336424E-4 8.483226432698324E-4 0.0 0.04254553731246498 2.875669977185872E-5 52-53 1.437834988592936E-4 8.483226432698324E-4 0.0 0.048203417992578185 2.875669977185872E-5 54-55 1.437834988592936E-4 8.483226432698324E-4 0.0 0.05355935332508687 2.875669977185872E-5 56-57 1.437834988592936E-4 8.483226432698324E-4 0.0 0.05915253143071339 2.875669977185872E-5 58-59 1.437834988592936E-4 8.55511818212797E-4 0.0 0.06534241105660599 2.875669977185872E-5 60-61 1.437834988592936E-4 8.627009931557617E-4 0.0 0.07108656183603476 2.875669977185872E-5 62-63 1.5816184874522298E-4 8.77079343041691E-4 0.0 0.07629152449474119 2.875669977185872E-5 64-65 1.5816184874522298E-4 9.92106142129126E-4 0.0 0.08151086550333356 2.875669977185872E-5 66-67 1.869185485170817E-4 9.992953170720907E-4 0.0 0.086917125060443 2.875669977185872E-5 68-69 1.869185485170817E-4 0.00101367366695802 0.0 0.0922874387428376 2.875669977185872E-5 70-71 2.0129689840301106E-4 0.0010208628419009847 0.0 0.0970107266803654 2.875669977185872E-5 72-73 2.0848607334597575E-4 0.0010280520168439492 0.0 0.10059812497690478 4.313504965778808E-5 74-75 2.1567524828894043E-4 0.001035241191786914 0.0 0.1032581197058017 4.313504965778808E-5 76-77 2.1567524828894043E-4 0.0010496195416728432 0.0 0.10574557423606748 4.313504965778808E-5 78-79 2.1567524828894043E-4 0.0010639978915587727 0.0 0.10730562519869083 4.313504965778808E-5 80-81 2.1567524828894043E-4 0.0010639978915587727 0.0 0.10790232671895689 5.751339954371744E-5 82-83 2.1567524828894043E-4 0.0010639978915587727 0.0 0.10830492051576292 7.18917494296468E-5 84-85 2.2286442323190512E-4 0.0010639978915587727 0.0 0.10858529833853853 7.18917494296468E-5 86-87 2.3724277311783443E-4 0.0010639978915587727 0.0 0.10867875761279708 7.18917494296468E-5 88 2.444319480607991E-4 0.0010927545913306314 0.0 0.10868594678774005 7.18917494296468E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10790 0.0 49.723114 1 GTATCAA 19775 0.0 38.3484 1 TCAACGC 23680 0.0 31.389072 4 ATCAACG 23750 0.0 31.296556 3 CAACGCA 24145 0.0 30.748951 5 TATCAAC 24610 0.0 30.395048 2 AACGCAG 24885 0.0 29.867622 6 ACGCAGA 28490 0.0 26.103207 7 CGCAGAG 28970 0.0 25.64103 8 GTGGTAT 5035 0.0 25.273037 1 TGGTATC 5005 0.0 23.878437 2 GCAGAGT 32865 0.0 22.57602 9 GTACATG 24590 0.0 20.43719 1 TACATGG 24150 0.0 20.43572 2 GAGTACT 19045 0.0 20.34815 12-13 ACATGGG 24285 0.0 19.737946 3 CAGAGTA 32670 0.0 19.427841 10-11 AGAGTAC 30360 0.0 18.768007 10-11 GTACTTT 20870 0.0 18.253786 14-15 CATGGGG 16580 0.0 17.553728 4 >>END_MODULE