##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138746_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8514004 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.264994472635905 33.0 33.0 34.0 31.0 34.0 2 32.02342705030441 33.0 32.0 33.0 30.0 34.0 3 32.071582066440186 33.0 33.0 33.0 29.0 34.0 4 32.4754632485491 33.0 33.0 34.0 31.0 34.0 5 32.79933565922685 33.0 33.0 34.0 31.0 34.0 6 36.8029179925215 38.0 37.0 38.0 35.0 38.0 7 37.081949808809114 38.0 38.0 38.0 36.0 38.0 8 37.12393945316445 38.0 38.0 38.0 36.0 38.0 9 37.21382090024858 38.0 38.0 38.0 36.0 38.0 10-11 37.25758738191807 38.0 38.0 38.0 36.5 38.0 12-13 37.29353744724574 38.0 38.0 38.0 37.0 38.0 14-15 37.317695645902916 38.0 38.0 38.0 37.0 38.0 16-17 37.3139414193369 38.0 38.0 38.0 37.0 38.0 18-19 37.18499315950521 38.0 38.0 38.0 36.5 38.0 20-21 37.30403265557037 38.0 38.0 38.0 37.0 38.0 22-23 37.324692424974884 38.0 38.0 38.0 37.0 38.0 24-25 37.3306101346055 38.0 38.0 38.0 37.0 38.0 26-27 37.30022182521089 38.0 38.0 38.0 37.0 38.0 28-29 37.277081663245696 38.0 38.0 38.0 37.0 38.0 30-31 37.2788819066373 38.0 38.0 38.0 37.0 38.0 32-33 37.26391972285647 38.0 38.0 38.0 37.0 38.0 34-35 37.24863512708008 38.0 38.0 38.0 37.0 38.0 36-37 37.226276569791395 38.0 38.0 38.0 37.0 38.0 38-39 37.185237433737825 38.0 38.0 38.0 36.5 38.0 40-41 37.19288449609276 38.0 38.0 38.0 37.0 38.0 42-43 37.169675872506346 38.0 38.0 38.0 36.0 38.0 44-45 37.13902880472943 38.0 38.0 38.0 36.0 38.0 46-47 37.105021632681726 38.0 38.0 38.0 36.0 38.0 48-49 37.07584733046366 38.0 38.0 38.0 36.0 38.0 50-51 37.05220939874747 38.0 38.0 38.0 36.0 38.0 52-53 37.03384951754626 38.0 38.0 38.0 36.0 38.0 54-55 37.01764193041577 38.0 38.0 38.0 36.0 38.0 56-57 37.005772852284004 38.0 38.0 38.0 36.0 38.0 58-59 36.99318420597437 38.0 38.0 38.0 36.0 38.0 60-61 36.98884989748777 38.0 38.0 38.0 36.0 38.0 62-63 36.983342194405964 38.0 38.0 38.0 36.0 38.0 64-65 36.984148577575795 38.0 38.0 38.0 36.0 38.0 66-67 36.97191771673957 38.0 38.0 38.0 36.0 38.0 68-69 36.97342062819004 38.0 38.0 38.0 36.0 38.0 70-71 36.96137216511013 38.0 38.0 38.0 36.0 38.0 72-73 36.93061993597575 38.0 38.0 38.0 36.0 38.0 74-75 36.949479839524656 38.0 38.0 38.0 36.0 38.0 76-77 36.93797911303323 38.0 38.0 38.0 36.0 38.0 78-79 36.92614367088228 38.0 38.0 38.0 36.0 38.0 80-81 36.90238542820752 38.0 38.0 38.0 35.0 38.0 82-83 36.888279739522886 38.0 38.0 38.0 35.0 38.0 84-85 36.87019067685165 38.0 38.0 38.0 35.0 38.0 86-87 36.831358649228775 38.0 38.0 38.0 35.0 38.0 88-89 36.814057987778654 38.0 38.0 38.0 35.0 38.0 90-91 36.8220891708917 38.0 38.0 38.0 35.0 38.0 92-93 36.78892075759103 38.0 38.0 38.0 35.0 38.0 94-95 36.72729110451245 38.0 38.0 38.0 34.5 38.0 96-97 36.74534802955468 38.0 38.0 38.0 35.0 38.0 98-99 36.772909454388525 38.0 38.0 38.0 35.0 38.0 100 35.202284424795764 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 5.0 18 22.0 19 37.0 20 74.0 21 235.0 22 763.0 23 2119.0 24 4829.0 25 9736.0 26 16536.0 27 26881.0 28 40132.0 29 57664.0 30 78321.0 31 103161.0 32 135551.0 33 178342.0 34 253178.0 35 415410.0 36 1005338.0 37 6185670.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.51644749051093 19.392426876942974 13.878957538662185 25.212168093883914 2 14.72822892730612 19.87610059849631 42.420792849051985 22.974877625145584 3 18.561748385366037 25.078482462540542 29.740683701816444 26.61908545027698 4 12.793064226890191 17.40639304374299 38.42701976649294 31.373522962873874 5 13.888948270876142 36.77371946920804 35.19776198556242 14.139570274353394 6 30.592493209103015 37.083541863132965 18.468232978477374 13.855731949286648 7 26.989137776907057 32.13789095446643 22.549627948216603 18.32334332040992 8 24.370707366357827 36.79643561360788 20.82736865051978 18.00548836951451 9 25.463225058386158 16.967175491108534 21.045092297349164 36.524507153156144 10-11 24.554492809728536 26.490086215604315 28.41966012700957 20.535760847657578 12-13 25.302127254234748 23.894417003704543 28.618146562894882 22.18530917916583 14-15 22.410801075498675 25.245513156911837 26.25149694550296 26.09218882208653 16-17 22.15636144873787 28.371157683270997 26.956124286528404 22.51635658146273 18-19 22.148956002369744 27.36160917941782 28.658384468694166 21.83105034951828 20-21 22.82322091879432 26.57390436199733 28.67260207602296 21.93027264318539 22-23 22.551485292781535 26.616711635317618 28.528945741443014 22.30285733045783 24-25 22.40224740087009 26.726978736500705 28.609082990668917 22.26169087196029 26-27 22.34995256467648 26.862484788595175 28.594615686944604 22.19294695978374 28-29 22.180853626579207 26.80712025297862 28.64255488665434 22.369471233787827 30-31 22.56706705873851 26.613284715766046 28.666252282108978 22.15339594338647 32-33 22.239533851115556 26.917696279623364 28.536253089339493 22.30651677992159 34-35 22.352802363782175 26.91131938901432 28.644780507332047 22.09109773987146 36-37 22.441502520304144 26.801784436211417 28.468883994235856 22.287829049248586 38-39 22.207398893861935 26.86249527138206 28.657415267361724 22.27269056739428 40-41 22.48013561297297 26.7246697096029 28.542109688687823 22.253084988736312 42-43 22.43891817239635 26.773717385380785 28.41714471666778 22.37021972555509 44-45 22.397306047523507 26.917452119279705 28.351217564304743 22.334024268892044 46-47 22.576099384458765 26.847393777736027 28.00535422975306 22.571152608052145 48-49 22.467188403844638 26.920449748788812 28.02007796556918 22.592283881797375 50-51 22.359830641716858 27.123719444633583 28.014397930065428 22.50205198358413 52-53 22.583575300641783 27.051797619789397 27.96394167860926 22.40068540095956 54-55 22.48598969853467 26.96922344083294 27.900023572659176 22.644763287973213 56-57 22.583964951913256 27.177651499691617 27.74669263438998 22.491690914005147 58-59 22.456477953321407 27.281125315245582 27.90258740547884 22.359809325954174 60-61 22.60276375703317 27.365502355299085 27.752139447714256 22.279594439953488 62-63 22.451272511983124 27.522583080399386 27.686979374033722 22.339165033583768 64-65 22.43070543305778 27.46107661408964 27.68030045032243 22.427917502530146 66-67 22.490693449526 27.436905115557842 27.57969117743088 22.49271025748528 68-69 22.459589080787097 27.365237373415237 27.68292341706965 22.492250128728024 70-71 22.486710170087733 27.104893850380762 27.739438672660356 22.66895730687115 72-73 22.596573854142267 27.01628280727909 27.715507425200297 22.671635913378342 74-75 22.468850269868078 27.13059354205204 27.704406244202538 22.696149943877337 76-77 22.631190516448783 27.091311546572506 27.58603783774603 22.691460099232682 78-79 22.581055830532744 27.109191578170634 27.54631754311439 22.763435048182235 80-81 22.576880858257297 27.172483213158838 27.535558891408556 22.71507703717531 82-83 22.651779201579917 27.130305309188046 27.591606745736012 22.626308743496022 84-85 22.727005138049993 27.12469471179682 27.506990946620785 22.641309203532405 86-87 22.588546019599306 27.15452729919685 27.577355537519892 22.679571143683948 88-89 22.665820430677613 27.155075260674018 27.488785026789813 22.690319281858557 90-91 22.685224062388116 27.182724530990715 27.516791654227994 22.61525975239317 92-93 22.687693304428553 27.190423385492924 27.493176184857404 22.628707125221123 94-95 22.641989492148422 27.23442500836078 27.497596065959417 22.625989433531384 96-97 22.73330373372496 27.320886318529737 27.517359411347275 22.42845053639803 98-99 23.805864590555192 29.255722830193694 27.72454358938351 19.213868989867606 100 22.682719818916446 30.12298614437501 21.66795752749915 25.52633650920939 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1641.0 1 1542.0 2 2068.0 3 2951.5 4 3652.5 5 4917.5 6 6221.0 7 8077.0 8 10562.5 9 11987.0 10 11891.0 11 11580.0 12 12507.5 13 14860.5 14 19401.0 15 24702.5 16 28598.0 17 30632.5 18 30177.0 19 27751.0 20 25065.5 21 23190.0 22 23217.5 23 26186.0 24 32476.0 25 42321.5 26 55498.0 27 70501.5 28 85655.0 29 102184.5 30 118889.0 31 136011.0 32 154956.5 33 173934.0 34 193653.0 35 212466.0 36 232069.5 37 252737.0 38 269235.5 39 282282.0 40 296468.0 41 309799.0 42 321264.0 43 339410.0 44 353452.5 45 360313.0 46 363688.5 47 362082.5 48 360870.5 49 358179.0 50 354266.0 51 346385.5 52 333716.0 53 319784.5 54 304668.5 55 285492.5 56 263622.0 57 239848.0 58 213742.5 59 186808.0 60 158795.5 61 130294.5 62 103762.5 63 80823.5 64 61225.5 65 45089.0 66 33155.5 67 25412.5 68 19349.0 69 14087.0 70 10235.0 71 7363.5 72 5114.5 73 3385.5 74 2220.5 75 1433.5 76 912.5 77 533.5 78 316.0 79 195.0 80 127.5 81 89.5 82 62.5 83 46.5 84 33.5 85 23.0 86 18.0 87 10.0 88 4.0 89 2.5 90 1.5 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.00453370705487101 6 3.8759671712627805E-4 7 1.1745355064432668E-5 8 0.0 9 0.0 10-11 0.0 12-13 5.872677532216334E-6 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 4.7117135141543704E-5 34-35 1.7707440152836456E-4 36-37 1.8950064566423114E-4 38-39 1.5471936614570077E-4 40-41 1.2563388276420388E-4 42-43 1.864677244519518E-4 44-45 1.4529421988718268E-4 46-47 4.269718873169953E-5 48-49 3.011525970324423E-4 50-51 5.137670059200196E-4 52-53 3.676227995672519E-4 54-55 0.0022142002242928373 56-57 0.003411590588407137 58-59 0.0020177346784558386 60-61 0.003566126798256318 62-63 0.002107020346189906 64-65 0.0028529876936571243 66-67 7.423374840947625E-4 68-69 8.221552268850063E-4 70-71 4.2171164321749117E-4 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 85.0 20-21 264.0 22-23 587.0 24-25 693.0 26-27 1722.0 28-29 4225.0 30-31 13118.0 32-33 17012.0 34-35 24132.0 36-37 38619.0 38-39 45018.0 40-41 44384.0 42-43 50543.0 44-45 60380.0 46-47 62763.0 48-49 59267.0 50-51 53894.0 52-53 52308.0 54-55 56155.0 56-57 58736.0 58-59 59458.0 60-61 59936.0 62-63 59381.0 64-65 63154.0 66-67 68771.0 68-69 70489.0 70-71 78512.0 72-73 62013.0 74-75 61094.0 76-77 63793.0 78-79 66068.0 80-81 65074.0 82-83 61614.0 84-85 61116.0 86-87 63102.0 88-89 66236.0 90-91 66970.0 92-93 67490.0 94-95 80571.0 96-97 267271.0 98-99 591808.0 100-101 5766178.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.95588838891881 #Duplication Level Percentage of deduplicated Percentage of total 1 89.8739622678575 76.35322307498001 2 7.040075959131531 11.961918148669778 3 1.6701870208859801 4.256766664050304 4 0.6290549474758894 2.137676876330354 5 0.3127395329084589 1.328453242628682 6 0.16039786367712422 0.817604580262487 7 0.08648084292379485 0.5142939787449474 8 0.053439183270421305 0.36319786316135116 9 0.03744490419163782 0.28630485911146863 >10 0.13285974309345608 1.7053945012223528 >50 0.0027206805559700786 0.1574042423142212 >100 5.910519286041298E-4 0.0819046992148132 >500 4.600209968822307E-5 0.035857269309170464 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.349071012886534E-5 2 0.0 2.349071012886534E-5 0.0 2.349071012886534E-5 2.349071012886534E-5 3 0.0 2.349071012886534E-5 0.0 2.349071012886534E-5 2.349071012886534E-5 4 0.0 5.8726775322163343E-5 0.0 4.698142025773068E-5 2.349071012886534E-5 5 0.0 7.047213038659601E-5 0.0 4.698142025773068E-5 2.349071012886534E-5 6 3.5236065193298005E-5 7.047213038659601E-5 0.0 4.698142025773068E-5 2.349071012886534E-5 7 3.5236065193298005E-5 7.047213038659601E-5 0.0 4.698142025773068E-5 2.349071012886534E-5 8 3.5236065193298005E-5 8.221748545102868E-5 0.0 4.698142025773068E-5 2.349071012886534E-5 9 3.5236065193298005E-5 1.2919890570875937E-4 0.0 7.047213038659601E-5 4.698142025773068E-5 10-11 3.5236065193298005E-5 1.2919890570875937E-4 0.0 9.396284051546135E-5 4.698142025773068E-5 12-13 3.5236065193298005E-5 1.4094426077319202E-4 0.0 1.1745355064432669E-4 5.8726775322163343E-5 14-15 4.698142025773068E-5 1.6443497090205735E-4 0.0 1.1745355064432669E-4 9.983551804767768E-5 16-17 4.698142025773068E-5 1.7618032596649003E-4 0.0 1.2919890570875937E-4 1.2919890570875937E-4 18-19 4.698142025773068E-5 1.9379835856313905E-4 0.0 1.4681693830540836E-4 1.350715832409757E-4 20-21 4.698142025773068E-5 2.231617462242207E-4 0.0 1.526896158376247E-4 1.4094426077319202E-4 22-23 5.285409778994701E-5 2.64270488949735E-4 0.0 1.703076484342737E-4 1.4681693830540836E-4 24-25 5.8726775322163343E-5 2.760158440141677E-4 0.0 1.7618032596649003E-4 1.58562293369841E-4 26-27 5.8726775322163343E-5 2.8188852154638404E-4 0.0 2.1141639115978804E-4 1.6443497090205735E-4 28-29 5.8726775322163343E-5 2.8188852154638404E-4 0.0 4.5219616998065773E-4 1.6443497090205735E-4 30-31 5.8726775322163343E-5 3.406152968685474E-4 0.0 0.0013448431548775406 1.703076484342737E-4 32-33 5.8726775322163343E-5 3.406152968685474E-4 0.0 0.0030596649942847103 1.879256810309227E-4 34-35 5.8726775322163343E-5 4.5219616998065773E-4 0.0 0.005649515785992114 1.9967103609535536E-4 36-37 5.8726775322163343E-5 5.755223981572008E-4 0.0 0.009349302631288404 1.9967103609535536E-4 38-39 5.8726775322163343E-5 5.755223981572008E-4 0.0 0.015128017322989278 2.231617462242207E-4 40-41 5.8726775322163343E-5 6.342491734793642E-4 0.0 0.02119449321376875 2.3490710128865337E-4 42-43 5.8726775322163343E-5 6.577398836082294E-4 0.0 0.026661955996262157 2.3490710128865337E-4 44-45 5.8726775322163343E-5 7.810661117847725E-4 0.0 0.03366218761466403 2.4665245635308605E-4 46-47 5.8726775322163343E-5 8.691562747680175E-4 0.0 0.041020652562531096 2.5839781141751873E-4 48-49 5.8726775322163343E-5 8.809016298324502E-4 0.0 0.04831451805754378 2.7014316648195136E-4 50-51 8.221748545102868E-5 9.513737602190462E-4 0.0 0.05541458519399334 2.760158440141677E-4 52-53 8.221748545102868E-5 9.631191152834789E-4 0.0 0.06247941626524958 2.877611990786004E-4 54-55 8.221748545102868E-5 9.689917928156952E-4 0.0 0.06928584952508832 2.936338766108167E-4 56-57 8.221748545102868E-5 9.748644703479115E-4 0.0 0.07614513688271698 3.053792316752494E-4 58-59 8.221748545102868E-5 9.748644703479115E-4 0.0 0.08242890184218847 3.229972642718984E-4 60-61 8.221748545102868E-5 9.866098254123442E-4 0.0 0.0887713935769821 3.288699418041147E-4 62-63 8.221748545102868E-5 0.0010394639232022911 0.0 0.09482025143516493 3.288699418041147E-4 64-65 8.221748545102868E-5 0.0011334267637177525 0.0 0.10089847268100885 3.288699418041147E-4 66-67 8.221748545102868E-5 0.001156917473846618 0.0 0.10660084256479091 3.288699418041147E-4 68-69 8.221748545102868E-5 0.0011686628289110505 0.0 0.11282000807140799 3.288699418041147E-4 70-71 9.396284051546135E-5 0.0011921535390399158 0.0 0.11771782113327642 3.288699418041147E-4 72-73 1.0570819557989402E-4 0.0012156442491687812 0.0 0.12134713584818611 3.288699418041147E-4 74-75 1.0570819557989402E-4 0.0012508803143620791 0.0 0.1241836390962466 3.288699418041147E-4 76-77 1.0570819557989402E-4 0.0012978617346198098 0.0 0.12693205218132386 3.288699418041147E-4 78-79 1.0570819557989402E-4 0.0013037344121520262 0.0 0.12908145215811503 3.288699418041147E-4 80-81 1.0570819557989402E-4 0.0013154797672164588 0.0 0.12979204613951323 3.288699418041147E-4 82-83 1.0570819557989402E-4 0.0013213524447486752 0.0 0.13034407782754154 3.5236065193298006E-4 84-85 1.0570819557989402E-4 0.0013389704773453242 0.0 0.1305789849288302 3.5236065193298006E-4 86-87 1.0570819557989402E-4 0.0013389704773453242 0.0 0.13070818383453894 3.6410600699741274E-4 88 1.0570819557989402E-4 0.0013742065425386223 0.0 0.13071405651207116 3.6410600699741274E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10555 0.0 50.2271 1 GTATCAA 18880 0.0 37.241753 1 TCAACGC 22620 0.0 30.64557 4 ATCAACG 22830 0.0 30.306997 3 CAACGCA 23280 0.0 29.721165 5 TATCAAC 23870 0.0 29.257612 2 AACGCAG 24130 0.0 28.797657 6 CTTATAC 6325 0.0 26.256971 1 ACGCAGA 27885 0.0 24.88882 7 CGCAGAG 28600 0.0 24.236439 8 GTGGTAT 5240 0.0 23.626265 1 TGGTATC 5140 0.0 22.827074 2 TATACAC 9380 0.0 21.108349 3 GCAGAGT 33775 0.0 20.561247 9 GTACATG 23985 0.0 20.035027 1 TACATGG 24065 0.0 19.448599 2 GAGTACT 19950 0.0 19.329184 12-13 CAGAGTA 32620 0.0 18.618196 10-11 ACATGGG 24455 0.0 18.450514 3 AGAGTAC 30270 0.0 18.21115 10-11 >>END_MODULE