##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138745_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7004676 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.20343053697273 33.0 32.0 34.0 31.0 34.0 2 32.00037717661745 33.0 32.0 33.0 30.0 34.0 3 32.045792553431454 33.0 33.0 33.0 29.0 34.0 4 32.47299975045241 33.0 33.0 34.0 31.0 34.0 5 32.80853047307256 33.0 33.0 34.0 31.0 34.0 6 36.82773778544504 38.0 37.0 38.0 35.0 38.0 7 37.112746685214276 38.0 38.0 38.0 36.0 38.0 8 37.156686761814534 38.0 38.0 38.0 36.0 38.0 9 37.238742377234864 38.0 38.0 38.0 36.0 38.0 10-11 37.283252430233745 38.0 38.0 38.0 37.0 38.0 12-13 37.317831331527685 38.0 38.0 38.0 37.0 38.0 14-15 37.34318446706172 38.0 38.0 38.0 37.0 38.0 16-17 37.34061239948856 38.0 38.0 38.0 37.0 38.0 18-19 37.216189228452535 38.0 38.0 38.0 36.5 38.0 20-21 37.33165771534752 38.0 38.0 38.0 37.0 38.0 22-23 37.351787764954324 38.0 38.0 38.0 37.0 38.0 24-25 37.35656112524194 38.0 38.0 38.0 37.0 38.0 26-27 37.324684464325045 38.0 38.0 38.0 37.0 38.0 28-29 37.29818307945908 38.0 38.0 38.0 37.0 38.0 30-31 37.300241857417234 38.0 38.0 38.0 37.0 38.0 32-33 37.27950500766555 38.0 38.0 38.0 37.0 38.0 34-35 37.26002502140216 38.0 38.0 38.0 37.0 38.0 36-37 37.230984911345296 38.0 38.0 38.0 37.0 38.0 38-39 37.17980248399789 38.0 38.0 38.0 36.5 38.0 40-41 37.192509109414786 38.0 38.0 38.0 37.0 38.0 42-43 37.16556180888246 38.0 38.0 38.0 36.5 38.0 44-45 37.12723391155867 38.0 38.0 38.0 36.0 38.0 46-47 37.07904014098956 38.0 38.0 38.0 36.0 38.0 48-49 37.03936051616367 38.0 38.0 38.0 36.0 38.0 50-51 37.01363016674879 38.0 38.0 38.0 36.0 38.0 52-53 36.994645992271366 38.0 38.0 38.0 36.0 38.0 54-55 36.98048768185191 38.0 38.0 38.0 36.0 38.0 56-57 36.97284249608077 38.0 38.0 38.0 36.0 38.0 58-59 36.96330614420151 38.0 38.0 38.0 36.0 38.0 60-61 36.96331010362681 38.0 38.0 38.0 36.0 38.0 62-63 36.95890527152227 38.0 38.0 38.0 36.0 38.0 64-65 36.96439446248736 38.0 38.0 38.0 36.0 38.0 66-67 36.95814768474892 38.0 38.0 38.0 36.0 38.0 68-69 36.96035083351967 38.0 38.0 38.0 36.0 38.0 70-71 36.954235591985935 38.0 38.0 38.0 36.0 38.0 72-73 36.92610334945296 38.0 38.0 38.0 36.0 38.0 74-75 36.95066054846098 38.0 38.0 38.0 36.0 38.0 76-77 36.94310118246262 38.0 38.0 38.0 36.0 38.0 78-79 36.93444463532326 38.0 38.0 38.0 36.0 38.0 80-81 36.91379991743959 38.0 38.0 38.0 35.5 38.0 82-83 36.90516640309639 38.0 38.0 38.0 35.5 38.0 84-85 36.890640090016575 38.0 38.0 38.0 35.0 38.0 86-87 36.855597955422525 38.0 38.0 38.0 35.0 38.0 88-89 36.84019621903673 38.0 38.0 38.0 35.0 38.0 90-91 36.848526168096896 38.0 38.0 38.0 35.0 38.0 92-93 36.817019703476106 38.0 38.0 38.0 35.0 38.0 94-95 36.758924189217424 38.0 38.0 38.0 35.0 38.0 96-97 36.779103842961476 38.0 38.0 38.0 35.0 38.0 98-99 36.80983566739237 38.0 38.0 38.0 35.0 38.0 100 35.22942581298267 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 6.0 18 12.0 19 46.0 20 73.0 21 233.0 22 620.0 23 1615.0 24 3890.0 25 7528.0 26 13623.0 27 21792.0 28 33236.0 29 48693.0 30 66118.0 31 86623.0 32 110725.0 33 145749.0 34 205783.0 35 337357.0 36 824804.0 37 5096150.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.50650222794031 19.822287283523178 14.007114675967882 24.664095812568632 2 14.56621262710795 20.192825478294786 42.94841046181151 22.292551432785757 3 18.316907163157868 25.985555934350142 30.073810694456103 25.62372620803589 4 12.428926048827954 17.902084264853933 38.92828162216211 30.740708064156003 5 13.40770844939276 37.286192480805404 35.34331841776368 13.962780652038159 6 29.562367980593468 37.684099081581785 18.828829754854347 13.924703182970402 7 26.205380520098288 32.817991867147036 22.887154238111798 18.089473374642882 8 24.029691023539133 36.93876776027899 21.20496365570656 17.826577560475318 9 25.40374458433195 16.972233976275277 21.361616154694378 36.26240528469839 10-11 24.22301188520354 26.87089310055169 28.540499232227155 20.36559578201761 12-13 25.15364915905098 24.337137387734806 28.84883817958448 21.660375273629732 14-15 22.254633120684847 25.550903582379426 26.732378980092435 25.4620843168433 16-17 21.618030584141223 28.803659155684002 27.38771928922908 22.190590970945696 18-19 21.580912521863965 27.493156000363182 29.505932893969682 21.419998583803164 20-21 22.38697203057922 26.64656833216017 29.523808096168203 21.442651541092406 22-23 22.089277072766585 26.79256618562321 29.36842674096131 21.7497300006489 24-25 21.91332215571256 26.923768602546343 29.538239563994257 21.624669677746837 26-27 21.83040540545365 27.09543475732344 29.508966213130055 21.56519362409286 28-29 21.604776199228098 26.989078304057294 29.687918280984256 21.71822721573035 30-31 21.99824551633342 27.104134703625444 29.37089442993972 21.526725350101415 32-33 22.02885544416599 26.961204010024343 29.36882297033164 21.64111757547803 34-35 21.96653266444233 26.97019027320198 29.467316027449154 21.59596103490654 36-37 21.743328480235693 27.159946167877493 29.369050940372055 21.727674411514762 38-39 21.653199247645123 27.008908122951112 29.58186497734702 21.75602765205674 40-41 21.915211423032318 26.84438265431363 29.489163285169024 21.751242637485028 42-43 21.956923915952405 26.868364184134265 29.316280227825136 21.85843167208819 44-45 21.87261737653829 27.12296671400401 29.175956888197003 21.8284590212607 46-47 22.095648653261136 26.97644325842898 28.762361068511886 22.165547019797998 48-49 21.99648411605578 27.121429100404544 28.685958319961998 22.196128463577683 50-51 21.88443092129152 27.315063164525544 28.692872648997408 22.107633265185527 52-53 22.06772992384719 27.275412523059405 28.72010917728754 21.936748375805866 54-55 22.013963064324468 27.237150610426653 28.517176495058997 22.231709830189878 56-57 22.17773427791751 27.408360340388306 28.28663846666203 22.12726691503216 58-59 21.92317145362155 27.63942264237779 28.5886888521882 21.848717051812464 60-61 22.13730918067271 27.852452802822913 28.218920075691805 21.791317940812576 62-63 21.921754440841536 28.035098568823376 28.19528938918665 21.84785760114844 64-65 21.86677734003052 28.008457994878277 28.15731259788044 21.967452067210765 66-67 21.990509107553983 27.959774530457032 28.053422697304104 21.99629366468488 68-69 21.99873169242795 27.82969087852646 28.176839437558975 21.99473799148661 70-71 22.004901048390387 27.498466348755446 28.29433098134768 22.202301621506486 72-73 22.153219470956763 27.368828251555 28.265224930869433 22.212727346618806 74-75 22.0151093059161 27.50354319064413 28.217225158056525 22.264122345383246 76-77 22.145261530282873 27.430132477138148 28.12935968670075 22.29524630587823 78-79 22.129712041353066 27.411110516613412 28.114893028878672 22.34428441315485 80-81 22.147341235413723 27.4944329057062 28.042836888896883 22.31538896998319 82-83 22.218556870572755 27.43872441762964 28.169845905832595 22.172872805965007 84-85 22.314003643877157 27.44403781714101 28.038023112454795 22.20393542652704 86-87 22.1778709424539 27.507464374362222 28.0692592463647 22.245405436819173 88-89 22.248838205512538 27.490526633813122 27.97891250637034 22.281722654304005 90-91 22.292713464524596 27.470536362659857 28.01952147162485 22.21722870119069 92-93 22.3186140095123 27.471588153738157 27.999803421944574 22.209994414804964 94-95 22.224693103404217 27.58082130211492 27.97966662081914 22.21481897366172 96-97 22.263875913862556 27.673591060062915 28.03267998369608 22.02985304237845 98-99 23.318424109853385 29.58567889882723 28.22935532984982 18.866541661469572 100 22.221413784592567 30.472567859564798 22.157847350371085 25.148171005471546 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1924.0 1 1777.0 2 2476.0 3 3578.5 4 4499.5 5 6224.0 6 7850.5 7 9989.5 8 12683.5 9 14064.5 10 13562.5 11 12946.0 12 14095.5 13 17205.0 14 23032.5 15 29541.5 16 34146.5 17 36317.0 18 35377.5 19 32210.0 20 28638.5 21 25781.5 22 25302.5 23 28152.5 24 34217.5 25 43960.5 26 56960.5 27 70766.5 28 84358.0 29 99358.0 30 114330.0 31 129520.5 32 146249.5 33 161763.0 34 177180.5 35 192686.5 36 208345.5 37 223588.5 38 234775.0 39 243585.0 40 252575.5 41 259262.0 42 266097.5 43 282965.5 44 293986.0 45 295129.5 46 292658.0 47 286982.5 48 284525.0 49 280224.0 50 274926.0 51 267494.0 52 257389.5 53 245807.5 54 233410.0 55 218582.0 56 200829.5 57 181436.5 58 162373.0 59 144093.5 60 122889.0 61 100270.0 62 79003.0 63 61137.5 64 46888.5 65 34991.0 66 25587.0 67 19031.0 68 14193.5 69 10248.5 70 7559.0 71 5621.0 72 3995.5 73 2776.0 74 1897.0 75 1278.0 76 819.5 77 482.0 78 302.0 79 203.5 80 140.0 81 95.5 82 68.0 83 51.5 84 36.5 85 22.0 86 12.0 87 8.0 88 7.0 89 6.0 90 5.5 91 4.0 92 3.0 93 1.5 94 0.0 95 0.0 96 0.5 97 0.5 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.005167976363217942 6 3.426282671746702E-4 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 7.1380888994722945E-6 14-15 2.8552355597889178E-5 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 7.16228740540409E-5 34-35 1.866856109480484E-4 36-37 2.4504467416661927E-4 38-39 1.95683781097686E-4 40-41 8.021949804909827E-5 42-43 1.9812884186500585E-4 44-45 1.330737212890674E-4 46-47 6.713102940137695E-5 48-49 3.461985219731449E-4 50-51 5.387849261636995E-4 52-53 4.2054610894300473E-4 54-55 0.002064564954949729 56-57 0.0033239940491186916 58-59 0.002161684271600904 60-61 0.0035073455981943806 62-63 0.0022865669054256805 64-65 0.0028042536912696674 66-67 7.058245698181787E-4 68-69 8.446565142780574E-4 70-71 4.893725290316106E-4 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 1.878996743510744E-5 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 68.0 20-21 286.0 22-23 610.0 24-25 727.0 26-27 1723.0 28-29 4285.0 30-31 12332.0 32-33 16106.0 34-35 22688.0 36-37 36165.0 38-39 43305.0 40-41 41525.0 42-43 47804.0 44-45 58233.0 46-47 60881.0 48-49 56130.0 50-51 50836.0 52-53 47809.0 54-55 51712.0 56-57 53960.0 58-59 54168.0 60-61 54554.0 62-63 52448.0 64-65 57330.0 66-67 64399.0 68-69 67901.0 70-71 76541.0 72-73 58389.0 74-75 54929.0 76-77 57516.0 78-79 59216.0 80-81 58843.0 82-83 55218.0 84-85 54335.0 86-87 56157.0 88-89 59024.0 90-91 59767.0 92-93 59088.0 94-95 67884.0 96-97 211567.0 98-99 467744.0 100-101 4590473.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.10836474029038 #Duplication Level Percentage of deduplicated Percentage of total 1 90.27156264342699 77.73136641776183 2 6.942877278219376 11.95679618039977 3 1.6527214067502762 4.269394131196158 4 0.5407245084494318 1.862436127903116 5 0.23832870956287938 1.0261047725561576 6 0.11481216003642383 0.5931772411822186 7 0.07014400940213168 0.42279901621615784 8 0.04214728002186947 0.29033866887474324 9 0.027254509481867077 0.21121571189540822 >10 0.09621258882143079 1.3109549618495375 >50 0.002608244280410276 0.14959489209963758 >100 5.294060957536101E-4 0.10546228931672798 >500 2.5751817179364274E-5 0.018515681334489893 >1k 5.1503634038371655E-5 0.05184390741409706 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.427617779894459E-5 0.0 0.0 0.0 3 0.0 1.427617779894459E-5 0.0 0.0 0.0 4 0.0 5.710471119577836E-5 0.0 0.0 0.0 5 0.0 5.710471119577836E-5 0.0 0.0 0.0 6 0.0 5.710471119577836E-5 0.0 0.0 0.0 7 0.0 5.710471119577836E-5 0.0 0.0 0.0 8 0.0 5.710471119577836E-5 0.0 0.0 0.0 9 0.0 1.2848560019050132E-4 0.0 0.0 0.0 10-11 1.427617779894459E-5 1.2848560019050132E-4 0.0 2.855235559788918E-5 0.0 12-13 1.427617779894459E-5 1.2848560019050132E-4 0.0 4.282853339683377E-5 0.0 14-15 1.427617779894459E-5 1.9986648918522427E-4 0.0 5.710471119577836E-5 0.0 16-17 1.427617779894459E-5 1.9986648918522427E-4 0.0 7.138088899472295E-5 0.0 18-19 1.427617779894459E-5 2.0700457808469657E-4 0.0 7.138088899472295E-5 0.0 20-21 1.427617779894459E-5 2.3555693368258575E-4 0.0 7.138088899472295E-5 0.0 22-23 1.427617779894459E-5 2.926616448783641E-4 0.0 7.851897789419525E-5 0.0 24-25 2.1414266698416886E-5 3.14075911576781E-4 0.0 1.1420942239155673E-4 0.0 26-27 2.855235559788918E-5 3.14075911576781E-4 0.0 1.498998668889182E-4 0.0 28-29 2.855235559788918E-5 3.14075911576781E-4 0.0 3.5690444497361477E-4 0.0 30-31 3.569044449736148E-5 3.426282671746702E-4 0.0 0.0011278180461166227 0.0 32-33 5.710471119577836E-5 3.426282671746702E-4 0.0 0.002997997337778364 0.0 34-35 5.710471119577836E-5 3.9973297837044854E-4 0.0 0.005453499919196834 0.0 36-37 5.710471119577836E-5 4.282853339683377E-4 0.0 0.009236687035917152 0.0 38-39 5.710471119577836E-5 4.3542342286781E-4 0.0 0.014697325044013457 0.0 40-41 5.710471119577836E-5 4.425615117672823E-4 0.0 0.02105736225344327 0.0 42-43 5.710471119577836E-5 4.568376895662269E-4 0.0 0.027503056529666753 0.0 44-45 5.710471119577836E-5 4.996662229630606E-4 0.0 0.03464828351803852 0.0 46-47 5.710471119577836E-5 5.282185785609498E-4 0.0 0.04191485801770132 0.0 48-49 7.138088899472295E-5 5.282185785609498E-4 0.0 0.04922426105076095 0.0 50-51 7.138088899472295E-5 5.781852008572559E-4 0.0 0.05729743959606411 0.0 52-53 7.138088899472295E-5 5.853232897567282E-4 0.0 0.06452118556233008 0.0 54-55 7.138088899472295E-5 5.853232897567282E-4 0.0 0.07135233663912506 0.0 56-57 7.138088899472295E-5 5.853232897567282E-4 0.0 0.0763918274021525 0.0 58-59 7.138088899472295E-5 5.924613786562004E-4 0.0 0.08233071736651346 0.0 60-61 7.138088899472295E-5 5.995994675556728E-4 0.0 0.08751296990753034 0.0 62-63 7.138088899472295E-5 5.995994675556728E-4 0.0 0.0924453893370657 0.0 64-65 7.138088899472295E-5 6.28151823153562E-4 0.0 0.09777040365607204 0.0 66-67 7.138088899472295E-5 6.424280009525065E-4 0.0 0.10328814637536411 0.0 68-69 7.138088899472295E-5 6.852565343493404E-4 0.0 0.10824198007159788 7.138088899472295E-6 70-71 7.138088899472295E-5 7.066708010477572E-4 0.0 0.11269614754486859 1.427617779894459E-5 72-73 7.138088899472295E-5 7.138088899472295E-4 0.0 0.11641509186149367 1.427617779894459E-5 74-75 7.138088899472295E-5 7.423612455451187E-4 0.0 0.11929887977688047 1.427617779894459E-5 76-77 7.138088899472295E-5 7.637755122435355E-4 0.0 0.12193283458078574 1.427617779894459E-5 78-79 7.138088899472295E-5 7.709136011430079E-4 0.0 0.12390294711704011 1.427617779894459E-5 80-81 7.138088899472295E-5 7.709136011430079E-4 0.0 0.12460247982918839 1.427617779894459E-5 82-83 7.138088899472295E-5 7.780516900424802E-4 0.0 0.1250878698743525 1.427617779894459E-5 84-85 7.138088899472295E-5 7.851897789419524E-4 0.0 0.12528773636353774 1.427617779894459E-5 86-87 7.138088899472295E-5 7.851897789419524E-4 0.0 0.12540194578592928 1.427617779894459E-5 88 7.138088899472295E-5 9.279515569313983E-4 0.0 0.12540194578592928 1.427617779894459E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11100 0.0 54.252846 1 GTATCAA 20965 0.0 38.50938 1 CTTATAC 6180 0.0 32.090412 1 TCAACGC 25155 0.0 31.68807 4 ATCAACG 25210 0.0 31.551268 3 CAACGCA 25700 0.0 30.982895 5 TATCAAC 25850 0.0 30.9351 2 AACGCAG 26595 0.0 30.050983 6 ACGCAGA 30270 0.0 26.359934 7 CGCAGAG 30645 0.0 26.023453 8 TATACAC 8730 0.0 25.745848 3 GTGGTAT 4530 0.0 24.85516 1 TGGTATC 4515 0.0 23.237432 2 GCAGAGT 35040 0.0 22.698526 9 TTATACA 9510 0.0 22.01972 2 GTACATG 24625 0.0 21.129751 1 GAGTACT 21805 0.0 21.08364 12-13 TACATGG 23995 0.0 21.009104 2 ACATCTC 10265 0.0 20.315748 8 CAGAGTA 34040 0.0 20.302166 10-11 >>END_MODULE