##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138744_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7172118 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 23.87418751336774 18.0 18.0 31.0 18.0 33.0 2 31.22669147384357 32.0 31.0 33.0 27.0 33.0 3 31.789654604121125 33.0 31.0 33.0 29.0 33.0 4 32.302763005293556 33.0 33.0 33.0 31.0 34.0 5 32.56705759721187 33.0 33.0 34.0 31.0 34.0 6 36.962139078024094 38.0 37.0 38.0 35.0 38.0 7 37.1346763954525 38.0 38.0 38.0 36.0 38.0 8 37.24388764936662 38.0 38.0 38.0 36.0 38.0 9 37.34781636331137 38.0 38.0 38.0 37.0 38.0 10-11 37.37275139644942 38.0 38.0 38.0 37.0 38.0 12-13 37.397270513396464 38.0 38.0 38.0 37.0 38.0 14-15 37.38952712434458 38.0 38.0 38.0 37.0 38.0 16-17 37.39505742933956 38.0 38.0 38.0 37.0 38.0 18-19 37.2784971608108 38.0 38.0 38.0 37.0 38.0 20-21 37.385736312335126 38.0 38.0 38.0 37.0 38.0 22-23 37.39926415816089 38.0 38.0 38.0 37.0 38.0 24-25 37.40636865354951 38.0 38.0 38.0 37.0 38.0 26-27 37.37554428545346 38.0 38.0 38.0 37.0 38.0 28-29 37.34997580305745 38.0 38.0 38.0 37.0 38.0 30-31 37.35248910097756 38.0 38.0 38.0 37.0 38.0 32-33 37.335044989187786 38.0 38.0 38.0 37.0 38.0 34-35 37.31182527047899 38.0 38.0 38.0 37.0 38.0 36-37 37.27881281151393 38.0 38.0 38.0 37.0 38.0 38-39 37.24155456825423 38.0 38.0 38.0 37.0 38.0 40-41 37.24376487502558 38.0 38.0 38.0 37.0 38.0 42-43 37.21525223628761 38.0 38.0 38.0 37.0 38.0 44-45 37.173120137581016 38.0 38.0 38.0 37.0 38.0 46-47 37.123494668803396 38.0 38.0 38.0 36.5 38.0 48-49 37.07784825109568 38.0 38.0 38.0 36.0 38.0 50-51 37.04511626423546 38.0 38.0 38.0 36.0 38.0 52-53 37.025820462767236 38.0 38.0 38.0 36.0 38.0 54-55 37.01299473141046 38.0 38.0 38.0 36.0 38.0 56-57 37.00098525447518 38.0 38.0 38.0 36.0 38.0 58-59 36.991255408497594 38.0 38.0 38.0 36.0 38.0 60-61 36.9929504280345 38.0 38.0 38.0 36.0 38.0 62-63 36.991791737614534 38.0 38.0 38.0 36.0 38.0 64-65 37.00016121768841 38.0 38.0 38.0 36.0 38.0 66-67 36.995146357325126 38.0 38.0 38.0 36.0 38.0 68-69 37.000582724176866 38.0 38.0 38.0 36.0 38.0 70-71 36.997306286143655 38.0 38.0 38.0 36.0 38.0 72-73 36.975369308585954 38.0 38.0 38.0 36.0 38.0 74-75 37.0009625513297 38.0 38.0 38.0 36.0 38.0 76-77 36.994976373037495 38.0 38.0 38.0 36.0 38.0 78-79 36.98819415173043 38.0 38.0 38.0 36.0 38.0 80-81 36.970745932352585 38.0 38.0 38.0 36.0 38.0 82-83 36.96188645254983 38.0 38.0 38.0 36.0 38.0 84-85 36.951105486935234 38.0 38.0 38.0 36.0 38.0 86-87 36.92066800035536 38.0 38.0 38.0 36.0 38.0 88-89 36.9073062002507 38.0 38.0 38.0 35.0 38.0 90-91 36.916209043609655 38.0 38.0 38.0 35.0 38.0 92-93 36.89029946945381 38.0 38.0 38.0 35.0 38.0 94-95 36.83212935204084 38.0 38.0 38.0 35.0 38.0 96-97 36.84610849254341 38.0 38.0 38.0 35.0 38.0 98-99 36.877566330389854 38.0 38.0 38.0 35.0 38.0 100 35.290433853220776 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 3.0 19 28.0 20 88.0 21 205.0 22 611.0 23 1594.0 24 3578.0 25 7370.0 26 13341.0 27 21636.0 28 33931.0 29 49681.0 30 65925.0 31 84072.0 32 107012.0 33 140930.0 34 203019.0 35 358476.0 36 1095695.0 37 4984921.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.749831500262545 20.1523176277914 16.519848111812998 22.57800276013306 2 14.128560071097548 21.377436902181476 42.5932479080796 21.90075511864138 3 18.136943647608696 26.97048486932312 30.60353998637502 24.289031496693166 4 12.116727583121193 18.81119356931941 39.685362120366676 29.38671672719272 5 12.973723350959112 37.85008423870948 35.86837260685167 13.30781980347973 6 28.466778962972754 38.71849474428469 19.372716236269532 13.442010056473022 7 25.41893482511024 33.265375723043036 23.73837128725434 17.577318164592384 8 23.619382726274164 37.09099599309437 21.687247755823314 17.602373524808154 9 25.315116120510005 17.185258245890545 21.962299002888685 35.53732663071076 10-11 23.684007987598644 27.316345046191376 29.11077313563441 19.88887383057557 12-13 24.708964960487613 24.906549565034314 29.409452647701322 20.97503282677675 14-15 21.852221467369993 26.09060713241243 27.45021257669022 24.60695882352736 16-17 20.949334631694573 29.270502799870275 28.13498048972424 21.64518207871092 18-19 20.92522738750255 28.045522954307224 30.298609141678927 20.7306405165113 20-21 21.854656307565552 27.131095408503626 30.32491067851285 20.68933760541797 22-23 21.551989615595627 27.174602439774475 30.141928698971704 21.13147924565819 24-25 21.299371635942943 27.284504764642037 30.303591920782537 21.112531678632486 26-27 21.237887207171095 27.47470850740183 30.193548756020007 21.093855529407072 28-29 21.110742948425056 27.502345583849824 30.238395027711025 21.148516440014088 30-31 21.464382598141444 27.353386005728233 30.19619282503509 20.986038571095236 32-33 21.303135686202637 27.447203141946876 30.15084716655725 21.09881400529324 34-35 21.369734130993418 27.520268709911488 30.134805881900405 20.97519127719469 36-37 21.321874223711678 27.43734207185119 30.071223012619186 21.169560691817946 38-39 21.149244412501602 27.50546732934065 30.201161338115984 21.144126920041764 40-41 21.4538175840559 27.3949879424923 30.010314455214377 21.14088001823742 42-43 21.344671170120233 27.452609985367182 29.889807666049172 21.312911178463416 44-45 21.395613096484052 27.627627041982834 29.663770118270065 21.312989743263046 46-47 21.47089277182072 27.582760132560537 29.31327066848458 21.633076427134164 48-49 21.488433579177823 27.713665362171685 29.25153460334516 21.54636645530533 50-51 21.444224506063946 27.86731611247214 29.06283825044824 21.62562113101567 52-53 21.558139818113364 27.90889992558932 28.96811084957663 21.56484940672069 54-55 21.55788136190165 27.838672282557326 28.94594133296729 21.657505022573737 56-57 21.654255805162933 27.875443251823906 28.831013239642417 21.63928770337074 58-59 21.53641637895218 28.028141935834032 28.997637511471314 21.437804173742474 60-61 21.665627373148823 28.073120523948862 28.85543140651219 21.405820696390126 62-63 21.501837868899205 28.200108956816223 28.824029766604177 21.4740234076804 64-65 21.450086706199258 28.11264279868169 28.820960322114313 21.616310173004738 66-67 21.49472572379131 28.1482296115055 28.738513391894642 21.61853127280855 68-69 21.526352440039265 28.031895958990226 28.819602614928485 21.62214898604202 70-71 21.545651982448913 27.826261257323075 28.84646076519322 21.781625995034787 72-73 21.631186000839346 27.81410293646375 28.78721325406341 21.767497808633497 74-75 21.561457173837095 27.879625672108137 28.75748002438169 21.80143712967308 76-77 21.742991454703546 27.86245072442892 28.564849174175215 21.829708646692318 78-79 21.67947580628914 27.884339664201207 28.557956921804088 21.878227607705565 80-81 21.69074353081094 27.88408030042526 28.563203740084862 21.861972428678936 82-83 21.782438711374276 27.874166786964334 28.607475646683834 21.73591885497756 84-85 21.874881597925846 27.935830790265832 28.421030595874498 21.768257015933827 86-87 21.7123029622369 27.988187146446208 28.48534517646909 21.814164714847802 88-89 21.816457835301634 27.936333127722907 28.43427216996658 21.81293686700888 90-91 21.84587208729793 27.990902778867987 28.391941197206716 21.771283936627366 92-93 21.92410902677338 28.049615333287647 28.346356937526373 21.6799187024126 94-95 21.791540772551365 28.119699260131487 28.34539913901601 21.74336082830114 96-97 21.848702609597538 28.177504491322946 28.438751319615506 21.535041579464004 98-99 22.91200734792593 30.022456658967943 28.717594273701845 18.347941719404275 100 21.802660606641926 30.997237362329262 22.735232642340137 24.46486938868868 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1671.0 1 1661.0 2 2420.0 3 3414.0 4 4501.5 5 6386.0 6 7999.5 7 10278.0 8 12822.5 9 13848.0 10 13688.0 11 13535.0 12 14866.0 13 18378.5 14 25403.0 15 33576.5 16 38898.0 17 41067.0 18 39898.5 19 36020.5 20 31594.0 21 28330.0 22 27852.0 23 31584.0 24 39435.5 25 50542.5 26 64856.0 27 81324.5 28 98115.0 29 116322.0 30 134928.0 31 153003.5 32 172675.5 33 191463.0 34 208652.0 35 224542.0 36 240530.5 37 254248.0 38 263250.0 39 270356.5 40 277481.5 41 282785.5 42 284979.0 43 288305.0 44 295839.5 45 303683.0 46 301822.0 47 297227.0 48 293131.5 49 283772.0 50 273104.0 51 260384.5 52 245069.5 53 228646.5 54 211031.0 55 192660.5 56 174155.0 57 155206.5 58 136444.0 59 117569.0 60 97370.0 61 78242.5 62 61565.0 63 46946.5 64 35197.5 65 26024.5 66 18876.0 67 14348.5 68 10996.5 69 7984.0 70 5944.5 71 4455.0 72 3094.5 73 2007.5 74 1302.0 75 813.0 76 495.5 77 291.5 78 185.0 79 120.5 80 77.0 81 46.0 82 29.0 83 20.0 84 15.0 85 11.0 86 9.5 87 8.0 88 5.5 89 3.5 90 3.0 91 3.0 92 3.0 93 3.0 94 1.5 95 0.5 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0033044632004102553 6 2.928005367452125E-4 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 6.9714413510764875E-6 14-15 6.9714413510764875E-6 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 5.596126305410132E-5 34-35 2.033721914475682E-4 36-37 2.1821375290065911E-4 38-39 2.123436345713274E-4 40-41 1.495568843170378E-4 42-43 2.2219759731287127E-4 44-45 2.0224225993590943E-4 46-47 5.102404530002212E-5 48-49 3.530685926950697E-4 50-51 4.821198796272753E-4 52-53 4.408284885784327E-4 54-55 0.0019490878682675477 56-57 0.0031921832304075393 58-59 0.0018499001703666325 60-61 0.003291608787284985 62-63 0.002005586101443789 64-65 0.00254781164538068 66-67 7.35802104995321E-4 68-69 6.951573580568578E-4 70-71 3.794169378825048E-4 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 73.0 20-21 348.0 22-23 724.0 24-25 724.0 26-27 1709.0 28-29 4189.0 30-31 12754.0 32-33 16687.0 34-35 23411.0 36-37 36795.0 38-39 43239.0 40-41 43874.0 42-43 50574.0 44-45 61297.0 46-47 63255.0 48-49 58289.0 50-51 50659.0 52-53 47190.0 54-55 49652.0 56-57 52295.0 58-59 54240.0 60-61 54899.0 62-63 53480.0 64-65 56974.0 66-67 61144.0 68-69 63385.0 70-71 67331.0 72-73 56523.0 74-75 56408.0 76-77 58613.0 78-79 60214.0 80-81 60454.0 82-83 56715.0 84-85 56001.0 86-87 57160.0 88-89 60058.0 90-91 60722.0 92-93 60220.0 94-95 69581.0 96-97 213970.0 98-99 472633.0 100-101 4743655.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.6865669439428 #Duplication Level Percentage of deduplicated Percentage of total 1 89.42826036905463 75.73372358424291 2 7.370866517456838 12.4842676153095 3 1.7939918359448699 4.557810291348962 4 0.6685403121942673 2.2646553561345697 5 0.278987345509947 1.1813240256020512 6 0.15198528019350854 0.7722666963360879 7 0.09276230688679774 0.5499004918430354 8 0.051549929065598854 0.3492469215015472 9 0.04121312018533811 0.31411778953899566 >10 0.11929014124399441 1.5427682556371443 >50 0.0020699627273809383 0.12288327507682426 >100 4.0396416077243674E-4 0.07330382658817577 >500 7.891537611476502E-5 0.05373187084012618 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 1.3942882702152977E-5 4.182864810645893E-5 0.0 1.3942882702152977E-5 0.0 3 1.3942882702152977E-5 4.182864810645893E-5 0.0 1.3942882702152977E-5 0.0 4 1.3942882702152977E-5 1.5337170972368273E-4 0.0 1.3942882702152977E-5 0.0 5 1.3942882702152977E-5 1.5337170972368273E-4 0.0 2.7885765404305954E-5 0.0 6 1.812574751279887E-4 1.5337170972368273E-4 0.0 2.7885765404305954E-5 1.3942882702152977E-5 7 1.9520035783014166E-4 1.5337170972368273E-4 0.0 8.365729621291786E-5 1.3942882702152977E-5 8 2.0914324053229464E-4 1.812574751279887E-4 0.0 9.760017891507083E-5 1.3942882702152977E-5 9 2.0914324053229464E-4 3.2068630214951844E-4 0.0 9.760017891507083E-5 1.3942882702152977E-5 10-11 2.370290059366006E-4 3.3462918485167143E-4 0.0 9.760017891507083E-5 1.3942882702152977E-5 12-13 2.6491477134090656E-4 3.3462918485167143E-4 0.0 9.760017891507083E-5 1.3942882702152977E-5 14-15 2.6491477134090656E-4 4.3920080511781876E-4 0.0 9.760017891507083E-5 1.3942882702152977E-5 16-17 3.485720675538244E-4 4.670865705221247E-4 0.0 1.4640026837260624E-4 1.3942882702152977E-5 18-19 3.485720675538244E-4 4.949723359264307E-4 0.0 1.6731459242583571E-4 1.3942882702152977E-5 20-21 3.485720675538244E-4 5.019437772775071E-4 0.0 1.6731459242583571E-4 1.3942882702152977E-5 22-23 3.485720675538244E-4 5.437724253839661E-4 0.0 1.6731459242583571E-4 2.0914324053229464E-5 24-25 3.834292743092069E-4 5.925725148415014E-4 0.0 2.0217179918121818E-4 2.7885765404305954E-5 26-27 4.043435983624363E-4 6.204582802458074E-4 0.0 2.9977197809628897E-4 2.7885765404305954E-5 28-29 4.3222936376674227E-4 6.274297215968839E-4 0.0 5.85601073490425E-4 2.7885765404305954E-5 30-31 4.4617224646889526E-4 7.250299005119548E-4 0.0 0.001498859890481445 2.7885765404305954E-5 32-33 4.8102945322427767E-4 7.668585486184136E-4 0.0 0.0038552070671452983 2.7885765404305954E-5 34-35 5.228581013307366E-4 8.714301688845609E-4 0.0 0.0068947554962146464 2.7885765404305954E-5 36-37 5.437724253839661E-4 9.969161132039378E-4 0.0 0.011677164263053118 2.7885765404305954E-5 38-39 5.437724253839661E-4 0.0010317733199593203 0.0 0.02453947355578924 2.7885765404305954E-5 40-41 5.856010734904251E-4 0.0011851450296830029 0.0 0.03823138436930346 2.7885765404305954E-5 42-43 6.204582802458074E-4 0.0012269736777894618 0.0 0.046074255889264504 3.485720675538244E-5 44-45 6.483440456501134E-4 0.0013594310634599152 0.0 0.05592490251833558 4.182864810645893E-5 46-47 6.971441351076488E-4 0.0014500598010239096 0.0 0.06681429390871707 4.880008945753542E-5 48-49 7.110870178098018E-4 0.0014640026837260626 0.0 0.07723659872857641 5.577153080861191E-5 50-51 7.250299005119548E-4 0.0016104029520986687 0.0 0.08781227525815945 6.274297215968839E-5 52-53 7.250299005119548E-4 0.0016173743934497452 0.0 0.11994364844527097 6.971441351076489E-5 54-55 7.459442245651843E-4 0.0016243458348008217 0.0 0.16081023764528135 6.971441351076489E-5 56-57 7.877728726716431E-4 0.0016313172761518982 0.0 0.2150271370326032 6.971441351076489E-5 58-59 8.086871967248726E-4 0.0016592030415562042 0.0 0.25049085918552927 8.365729621291786E-5 60-61 8.226300794270256E-4 0.0017219460137158926 0.0 0.26504025728522596 8.365729621291786E-5 62-63 8.296015207781021E-4 0.0017358888964180456 0.0 0.2779513666674196 9.760017891507083E-5 64-65 8.365729621291786E-4 0.0020356608745143345 0.0 0.28442086424121854 9.760017891507083E-5 66-67 8.644587275334845E-4 0.0020496037572164875 0.0 0.2907160757812406 9.760017891507083E-5 68-69 8.644587275334845E-4 0.0020774895226207935 0.0 0.29697643011450736 9.760017891507083E-5 70-71 8.923444929377905E-4 0.002098403846674023 0.0 0.3019261534737716 9.760017891507083E-5 72-73 9.062873756399435E-4 0.0021053752880250995 0.0 0.30585107495442765 1.1154306161722381E-4 74-75 9.760017891507083E-4 0.002126289612078329 0.0 0.3088139375286352 1.1154306161722381E-4 76-77 0.0010178304372571673 0.002168118260184788 0.0 0.311616456951768 1.185145029683003E-4 78-79 0.0010178304372571673 0.002196004025589094 0.0 0.3134987461165586 1.2548594431937679E-4 80-81 0.0010248018786082438 0.002209946908291247 0.0 0.3139379469216764 1.3245738567045328E-4 82-83 0.0010387447613103968 0.0022238897909934 0.0 0.3143492619613899 1.3942882702152977E-4 84-85 0.0010736019680657792 0.0022448041150466293 0.0 0.31457931952597545 1.3942882702152977E-4 86-87 0.0010736019680657792 0.0023145185285573943 0.0 0.31469783402894375 1.3942882702152977E-4 88 0.0010736019680657792 0.0024539473555789237 0.0 0.31470480547029483 1.3942882702152977E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11675 0.0 52.382915 1 GTATCAA 21615 0.0 37.27031 1 TCAACGC 26640 0.0 30.304327 4 ATCAACG 26725 0.0 30.207945 3 CAACGCA 26995 0.0 29.92164 5 TATCAAC 27530 0.0 29.666162 2 AACGCAG 27850 0.0 29.032923 6 TGGTATC 5170 0.0 25.956493 2 GTGGTAT 5380 0.0 25.340508 1 ACGCAGA 31965 0.0 25.30875 7 CGCAGAG 31970 0.0 25.291426 8 GCAGAGT 36520 0.0 22.128683 9 GAGTACT 22930 0.0 21.0978 12-13 TACATGG 23290 0.0 19.909813 2 CAGAGTA 36195 0.0 19.64715 10-11 GTACATG 23995 0.0 19.485138 1 ACATGGG 23400 0.0 19.19525 3 AGAGTAC 34250 0.0 18.735252 10-11 GTACTTT 25820 0.0 18.687086 14-15 CATGGGG 15795 0.0 17.966164 4 >>END_MODULE