##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138741_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8393758 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 23.135862268128292 18.0 18.0 30.0 18.0 33.0 2 30.96678793932348 32.0 30.0 33.0 27.0 33.0 3 31.653188119076106 33.0 31.0 33.0 29.0 33.0 4 32.222967590916966 33.0 33.0 33.0 31.0 34.0 5 32.51258339828239 33.0 33.0 34.0 31.0 34.0 6 36.92628522290016 38.0 37.0 38.0 35.0 38.0 7 37.12062666090683 38.0 38.0 38.0 36.0 38.0 8 37.21975448899051 38.0 38.0 38.0 36.0 38.0 9 37.33333793993108 38.0 38.0 38.0 37.0 38.0 10-11 37.35910941201783 38.0 38.0 38.0 37.0 38.0 12-13 37.38183403667344 38.0 38.0 38.0 37.0 38.0 14-15 37.37492056597296 38.0 38.0 38.0 37.0 38.0 16-17 37.37938269128083 38.0 38.0 38.0 37.0 38.0 18-19 37.26517121413317 38.0 38.0 38.0 37.0 38.0 20-21 37.36964147267206 38.0 38.0 38.0 37.0 38.0 22-23 37.38481780894183 38.0 38.0 38.0 37.0 38.0 24-25 37.39024251823082 38.0 38.0 38.0 37.0 38.0 26-27 37.35947287210944 38.0 38.0 38.0 37.0 38.0 28-29 37.3370767607163 38.0 38.0 38.0 37.0 38.0 30-31 37.34191877111093 38.0 38.0 38.0 37.0 38.0 32-33 37.328436674122216 38.0 38.0 38.0 37.0 38.0 34-35 37.30961132780806 38.0 38.0 38.0 37.0 38.0 36-37 37.282563925441735 38.0 38.0 38.0 37.0 38.0 38-39 37.250684442719916 38.0 38.0 38.0 37.0 38.0 40-41 37.25222315049313 38.0 38.0 38.0 37.0 38.0 42-43 37.22722473881526 38.0 38.0 38.0 37.0 38.0 44-45 37.19190640357726 38.0 38.0 38.0 37.0 38.0 46-47 37.15160706689474 38.0 38.0 38.0 37.0 38.0 48-49 37.117997413029514 38.0 38.0 38.0 36.0 38.0 50-51 37.091317276979936 38.0 38.0 38.0 36.0 38.0 52-53 37.0728341654372 38.0 38.0 38.0 36.0 38.0 54-55 37.05886015693273 38.0 38.0 38.0 36.0 38.0 56-57 37.047344865361325 38.0 38.0 38.0 36.0 38.0 58-59 37.03793847417633 38.0 38.0 38.0 36.0 38.0 60-61 37.035548407129475 38.0 38.0 38.0 36.0 38.0 62-63 37.032059923605246 38.0 38.0 38.0 36.0 38.0 64-65 37.038720561488574 38.0 38.0 38.0 36.0 38.0 66-67 37.03370788154952 38.0 38.0 38.0 36.0 38.0 68-69 37.040244175507965 38.0 38.0 38.0 36.0 38.0 70-71 37.03375267891754 38.0 38.0 38.0 36.0 38.0 72-73 37.00775603520493 38.0 38.0 38.0 36.0 38.0 74-75 37.03227790128152 38.0 38.0 38.0 36.0 38.0 76-77 37.0210738136837 38.0 38.0 38.0 36.0 38.0 78-79 37.0128253874005 38.0 38.0 38.0 36.0 38.0 80-81 36.9913843488431 38.0 38.0 38.0 36.0 38.0 82-83 36.981162803842324 38.0 38.0 38.0 36.0 38.0 84-85 36.965865148655624 38.0 38.0 38.0 36.0 38.0 86-87 36.9297182116772 38.0 38.0 38.0 35.5 38.0 88-89 36.91354068305325 38.0 38.0 38.0 35.0 38.0 90-91 36.919560575526035 38.0 38.0 38.0 35.0 38.0 92-93 36.88535610076487 38.0 38.0 38.0 35.0 38.0 94-95 36.827184019436146 38.0 38.0 38.0 35.0 38.0 96-97 36.84159045616258 38.0 38.0 38.0 35.0 38.0 98-99 36.87028368120964 38.0 38.0 38.0 35.0 38.0 100 35.292393964864615 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 3.0 18 3.0 19 20.0 20 96.0 21 272.0 22 693.0 23 1973.0 24 4264.0 25 8379.0 26 14900.0 27 24684.0 28 36879.0 29 53704.0 30 73256.0 31 95205.0 32 123125.0 33 164063.0 34 243132.0 35 437032.0 36 1352606.0 37 5759469.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.398322420065 19.2542363027383 16.65316059862579 22.694280678570912 2 14.67859807252008 20.89652811053166 41.77654395087397 22.64832986607429 3 18.590445423849484 26.108401028478546 30.12514775860824 25.176005789063733 4 12.677992384340838 18.022416181167006 38.28983394565342 31.00975748883873 5 13.497409002339314 37.56961500497112 35.276586543015206 13.65638944967436 6 30.06874528741006 37.492588225580995 18.582791292414502 13.855875194594446 7 26.589687241400096 32.72739099697656 22.80573254554158 17.87718921608176 8 24.57586935434641 36.559083547559986 20.967390291690563 17.897656806403045 9 25.803650760481776 16.821321272307348 21.062877914755227 36.31215005245564 10-11 24.511851544921832 26.727247795326004 28.386599899592053 20.37430076016011 12-13 25.380175363645225 24.24865000873268 28.679460379963302 21.691714247658798 14-15 22.468145074964642 25.455138860941528 26.550798408865067 25.525917655228763 16-17 21.843606880255543 28.64048498896442 27.237180295166958 22.278727835613083 18-19 21.885054346336887 27.430705054875304 29.20106822236238 21.483172376425433 20-21 22.758712118390967 26.601634057512268 29.15094848324607 21.488705340850693 22-23 22.52043829770749 26.54861117319435 29.040501116008237 21.890449413089925 24-25 22.214230108145703 26.69922489409604 29.15477313116424 21.931771866594012 26-27 22.115580931409824 26.882633069790383 29.08376687372931 21.918019125070483 28-29 22.008565759904698 26.894327688191595 29.127926750469314 21.969179801434397 30-31 22.321286832041032 26.7585653805123 29.016366106357893 21.903781681088773 32-33 21.987603127462762 26.90350936678462 29.026064244651284 22.08282326110134 34-35 22.19715667641346 26.892825165237138 28.957525643701903 21.9524925146475 36-37 22.147181644433207 26.836664008072802 29.00452784548136 22.011626502012625 38-39 21.99890720274396 26.969170519838915 29.04072637007804 21.991195907339087 40-41 22.315536852352466 26.81980615992508 28.90327146166313 21.96138552605932 42-43 22.285808863630624 26.882644033429358 28.647594688129978 22.183952414810033 44-45 22.257980233891537 27.1043609133934 28.49524277110959 22.14241608160547 46-47 22.4087442001061 27.062204465672185 28.167568249056636 22.36148308516508 48-49 22.337827053498653 27.148820755654274 28.105486007408135 22.407866183438934 50-51 22.319075245122978 27.372527227409098 27.929674570827324 22.378722956640598 52-53 22.542063161506633 27.29441316127192 27.817551316288597 22.345972360932855 54-55 22.4544301448001 27.274202521053276 27.721573343384502 22.54979399076212 56-57 22.54901255939277 27.408935873124264 27.599017585450497 22.443033982032464 58-59 22.399857897320793 27.51242244584083 27.736759006594667 22.350960650243714 60-61 22.511963649689623 27.586737000733528 27.649892112788617 22.251407236788232 62-63 22.42838513928108 27.71461477584155 27.519732310868566 22.337267774008804 64-65 22.36349563053628 27.655997306725833 27.554539275628915 22.42596778710897 66-67 22.505020133494376 27.63447072912805 27.42534206439643 22.43516707298114 68-69 22.444680049767136 27.536151123275303 27.563474987926263 22.455693839031294 70-71 22.446418869001317 27.297744178683253 27.643548458249406 22.612288494066025 72-73 22.577584439800166 27.251426835404153 27.573830650011267 22.597158074784414 74-75 22.404059778992863 27.399560220539648 27.60858943902179 22.587790561445697 76-77 22.590714088443708 27.27909041466686 27.475301137802 22.654894359087425 78-79 22.526086394203077 27.296340231327026 27.416375194208953 22.761198180260948 80-81 22.559335174486865 27.381584604845095 27.383171637261995 22.67590858340605 82-83 22.634302799649607 27.33157197215904 27.481777915108545 22.5523473130828 84-85 22.736782879196312 27.333803006145935 27.323508293953996 22.605905820703754 86-87 22.518283731523148 27.4031269709805 27.449703455475305 22.628885842021045 88-89 22.65527979787341 27.353821348702663 27.3161997041094 22.674699149314527 90-91 22.69513342019668 27.366313274940456 27.35049577375414 22.58805753110872 92-93 22.74598305911612 27.368282161172537 27.32399185922951 22.561742920481837 94-95 22.58225944037153 27.50917514626999 27.280929321428932 22.62763609192955 96-97 22.689914173796854 27.521488740038635 27.375108115650832 22.41348897051368 98-99 23.715888379775663 29.502309447531168 27.543827667936338 19.23797450475683 100 22.625744705851417 30.293417645218906 21.539580682726942 25.541256966202734 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2755.0 1 2384.0 2 2298.5 3 3009.0 4 4321.5 5 6179.0 6 7491.5 7 7819.5 8 7569.0 9 7492.5 10 7901.5 11 9307.0 12 11902.0 13 17922.5 14 27578.0 15 37162.5 16 44299.0 17 46886.5 18 45978.0 19 41659.0 20 36484.0 21 33288.0 22 32511.5 23 35751.5 24 42799.5 25 54171.5 26 69686.5 27 86170.0 28 102489.5 29 120392.0 30 137543.5 31 154943.0 32 174311.0 33 192730.0 34 210664.0 35 228470.0 36 245905.0 37 262303.5 38 274404.0 39 282567.5 40 291627.5 41 300529.0 42 307168.0 43 315713.5 44 329561.0 45 344323.5 46 347275.0 47 345204.5 48 345244.5 49 341420.5 50 337175.5 51 332139.5 52 322752.5 53 309686.0 54 296124.5 55 279908.5 56 260304.0 57 237778.5 58 213508.5 59 188719.5 60 161029.0 61 131989.5 62 104166.0 63 80614.5 64 61898.5 65 46482.0 66 34186.5 67 25943.0 68 19897.0 69 14440.0 70 10444.0 71 7561.0 72 5253.0 73 3504.0 74 2299.0 75 1453.0 76 920.0 77 555.5 78 355.0 79 216.0 80 145.5 81 94.5 82 61.0 83 43.0 84 29.5 85 21.5 86 14.0 87 9.0 88 7.5 89 7.0 90 5.5 91 2.5 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.003252416855477606 6 2.263586822493572E-4 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 1.1913614855229326E-5 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 5.386766868510816E-5 34-35 1.1403723315662563E-4 36-37 1.084729224166104E-4 38-39 1.3943360614225646E-4 40-41 6.712839202053348E-5 42-43 1.5359233424346006E-4 44-45 1.362417816015754E-4 46-47 3.750384648825545E-5 48-49 3.027891612834854E-4 50-51 3.4404671440803287E-4 52-53 3.9225722814323436E-4 54-55 0.001983062057788502 56-57 0.002960645956741237 58-59 0.001786801130814348 60-61 0.0033126399765002115 62-63 0.0019256391947956482 64-65 0.002653134956447301 66-67 6.765218358697891E-4 68-69 5.800331861844382E-4 70-71 3.55987070828793E-4 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 1.5308906951698103E-5 90-91 0.0 92-93 0.0 94-95 7.921900831585697E-6 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 1023.0 20-21 3000.0 22-23 1867.0 24-25 2023.0 26-27 3252.0 28-29 6742.0 30-31 17114.0 32-33 21541.0 34-35 29559.0 36-37 45996.0 38-39 55210.0 40-41 53721.0 42-43 61188.0 44-45 73273.0 46-47 74401.0 48-49 68911.0 50-51 85075.0 52-53 58817.0 54-55 63987.0 56-57 66892.0 58-59 66792.0 60-61 65390.0 62-63 63967.0 64-65 68675.0 66-67 74873.0 68-69 76829.0 70-71 82546.0 72-73 68329.0 74-75 67117.0 76-77 70118.0 78-79 72160.0 80-81 71534.0 82-83 66945.0 84-85 65781.0 86-87 69062.0 88-89 72714.0 90-91 74323.0 92-93 72751.0 94-95 80998.0 96-97 253676.0 98-99 557365.0 100-101 5438221.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.35285779568139 #Duplication Level Percentage of deduplicated Percentage of total 1 89.36006595156805 75.3777693582533 2 7.390457697256359 12.46812454363329 3 1.8252135916556784 4.61885947631029 4 0.6460760239707825 2.179934359008266 5 0.29851343012064036 1.2590230460533725 6 0.1586071912664526 0.8027381910162908 7 0.09345671354958723 0.5518338607670042 8 0.0572232164679702 0.3861553473067347 9 0.03680012992291627 0.279377651362532 >10 0.12893741655613705 1.7257462315566265 >50 0.003987712854612378 0.2261231109928305 >100 6.128115302686643E-4 0.08038164032849027 >500 2.4056640787249093E-5 0.0166601129388163 >1k 2.405663978570515E-5 0.02727307047206136 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.1913614855229326E-5 2 0.0 2.3827229710458653E-5 0.0 0.0 1.1913614855229326E-5 3 0.0 2.3827229710458653E-5 0.0 0.0 1.1913614855229326E-5 4 0.0 8.339530398660528E-5 0.0 1.1913614855229326E-5 1.1913614855229326E-5 5 0.0 8.339530398660528E-5 0.0 1.1913614855229326E-5 1.1913614855229326E-5 6 0.0 8.339530398660528E-5 0.0 1.1913614855229326E-5 1.1913614855229326E-5 7 0.0 8.339530398660528E-5 0.0 1.1913614855229326E-5 1.1913614855229326E-5 8 0.0 8.339530398660528E-5 0.0 1.1913614855229326E-5 1.1913614855229326E-5 9 0.0 1.6679060797321056E-4 0.0 1.1913614855229326E-5 1.1913614855229326E-5 10-11 0.0 1.787042228284399E-4 0.0 5.956807427614663E-5 1.1913614855229326E-5 12-13 0.0 1.787042228284399E-4 0.0 5.956807427614663E-5 2.9784037138073315E-5 14-15 0.0 2.8592675652550385E-4 0.0 5.956807427614663E-5 7.148168913137596E-5 16-17 0.0 2.8592675652550385E-4 0.0 5.956807427614663E-5 7.148168913137596E-5 18-19 0.0 3.157107936635771E-4 0.0 5.956807427614663E-5 8.935211141421995E-5 20-21 0.0 3.693220605121091E-4 0.0 5.956807427614663E-5 1.1913614855229326E-4 22-23 0.0 3.9314929022256774E-4 0.0 8.339530398660528E-5 1.250929559799079E-4 24-25 0.0 4.3484694221587045E-4 0.0 1.0722253369706394E-4 1.3104976340752258E-4 26-27 0.0 4.527173644987144E-4 0.0 1.131793411246786E-4 1.3104976340752258E-4 28-29 0.0 4.646309793539437E-4 0.0 2.740131416702745E-4 1.3700657083513725E-4 30-31 0.0 5.420694759129343E-4 0.0 9.947868404116488E-4 1.4296337826275192E-4 32-33 0.0 5.539830907681637E-4 0.0 0.002198061940789811 1.489201856903666E-4 34-35 0.0 6.37378394754769E-4 0.0 0.004205506043895952 1.5487699311798124E-4 36-37 0.0 7.029032764585303E-4 0.0 0.007160082527992825 1.5487699311798124E-4 38-39 0.0 7.446009284518329E-4 0.0 0.011705126595262813 1.6679060797321056E-4 40-41 0.0 8.696938844317408E-4 0.0 0.01658375187847922 1.787042228284399E-4 42-43 0.0 8.935211141421995E-4 0.0 0.02139685227999187 1.787042228284399E-4 44-45 0.0 9.88830032984034E-4 0.0 0.02662097239400993 1.787042228284399E-4 46-47 0.0 0.0010662685295430247 0.0 0.03236333475423046 1.787042228284399E-4 48-49 0.0 0.0010900957592534833 0.0 0.03857032809380495 1.787042228284399E-4 50-51 0.0 0.0012687999820819233 0.0 0.04447352425457107 1.787042228284399E-4 52-53 0.0 0.0012866704043647673 0.0 0.050489899756461884 1.9061783768366922E-4 54-55 0.0 0.001292627211792382 0.0 0.05609525554584728 1.9061783768366922E-4 56-57 0.0 0.0012985840192199967 0.0 0.061307462045010114 2.0253145253889854E-4 58-59 0.0 0.0013462384786409138 0.0 0.06682346572298128 2.144450673941279E-4 60-61 0.0 0.0013819793232066019 0.0 0.07248838958664283 2.144450673941279E-4 62-63 0.0 0.0013938929380618312 0.0 0.0779626956126207 2.144450673941279E-4 64-65 0.0 0.0014772882420484364 0.0 0.083198729341494 2.144450673941279E-4 66-67 0.0 0.0014892018569036658 0.0 0.0886015536783405 2.144450673941279E-4 68-69 0.0 0.0015428131237521978 0.0 0.09361122872496443 2.263586822493572E-4 70-71 0.0 0.0015845107757455003 0.0 0.09823966809622103 2.3827229710458652E-4 72-73 0.0 0.0015964243906007296 0.0 0.10202224081275635 2.5018591195981587E-4 74-75 0.0 0.0016023811980283443 0.0 0.1047683290368867 2.561427193874305E-4 76-77 0.0 0.0016142948128835737 0.0 0.1077348191358388 2.6209952681504516E-4 78-79 0.0 0.0016202516203111883 0.0 0.10958738624582695 2.6209952681504516E-4 80-81 0.0 0.0016202516203111883 0.0 0.11024859187029218 2.8592675652550385E-4 82-83 0.0 0.0016381220425940324 0.0 0.1107847045387775 3.097539862359625E-4 84-85 0.0 0.001661949272304491 0.0 0.110993192798744 3.1571079366357716E-4 86-87 0.0 0.0016917333094425644 0.0 0.11108850171758586 3.335812159464211E-4 88 0.0 0.001751301383718711 0.0 0.11109445852501347 3.4549483080165047E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13175 0.0 49.527317 1 GTATCAA 23905 0.0 37.874313 1 TCAACGC 30080 0.0 30.536495 4 ATCAACG 30165 0.0 30.408253 3 TATCAAC 30895 0.0 29.840813 2 CAACGCA 30750 0.0 29.829756 5 AACGCAG 31760 0.0 28.92001 6 ACGCAGA 36220 0.0 25.335476 7 GTGGTAT 5965 0.0 24.965244 1 CGCAGAG 36840 0.0 24.851513 8 TGGTATC 6080 0.0 23.376545 2 CTTATAC 5670 0.0 22.747288 1 TACATGG 30860 0.0 21.722021 2 GCAGAGT 42555 0.0 21.553913 9 GTACATG 31080 0.0 21.48636 1 ACATGGG 31780 0.0 20.706038 3 GAGTACT 24140 0.0 19.85922 12-13 TATACAC 8460 0.0 19.407953 3 CAGAGTA 41380 0.0 18.926147 10-11 AGAGTAC 38745 0.0 18.669374 10-11 >>END_MODULE