##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138739_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8062818 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 23.232626607719535 18.0 18.0 30.0 18.0 33.0 2 31.028540517719737 32.0 30.0 33.0 27.0 33.0 3 31.680896679051916 33.0 31.0 33.0 29.0 33.0 4 32.250799534356354 33.0 33.0 33.0 31.0 34.0 5 32.53043365235331 33.0 33.0 34.0 31.0 34.0 6 36.948608538602755 38.0 37.0 38.0 35.0 38.0 7 37.13192856393385 38.0 38.0 38.0 36.0 38.0 8 37.23682513979604 38.0 38.0 38.0 36.0 38.0 9 37.34921115669484 38.0 38.0 38.0 37.0 38.0 10-11 37.37307930056216 38.0 38.0 38.0 37.0 38.0 12-13 37.39878582153287 38.0 38.0 38.0 37.0 38.0 14-15 37.393793708353584 38.0 38.0 38.0 37.0 38.0 16-17 37.39792160755706 38.0 38.0 38.0 37.0 38.0 18-19 37.28364946350023 38.0 38.0 38.0 37.0 38.0 20-21 37.38809130109108 38.0 38.0 38.0 37.0 38.0 22-23 37.40431935874365 38.0 38.0 38.0 37.0 38.0 24-25 37.412967283221825 38.0 38.0 38.0 37.0 38.0 26-27 37.38244437106039 38.0 38.0 38.0 37.0 38.0 28-29 37.35836892955952 38.0 38.0 38.0 37.0 38.0 30-31 37.36372668565255 38.0 38.0 38.0 37.0 38.0 32-33 37.35009360389721 38.0 38.0 38.0 37.0 38.0 34-35 37.32945992664008 38.0 38.0 38.0 37.0 38.0 36-37 37.30185635716707 38.0 38.0 38.0 37.0 38.0 38-39 37.270219176102145 38.0 38.0 38.0 37.0 38.0 40-41 37.265961485097115 38.0 38.0 38.0 37.0 38.0 42-43 37.23833039979621 38.0 38.0 38.0 37.0 38.0 44-45 37.19793565723161 38.0 38.0 38.0 37.0 38.0 46-47 37.15403786314943 38.0 38.0 38.0 37.0 38.0 48-49 37.111593769945515 38.0 38.0 38.0 36.5 38.0 50-51 37.078610818713855 38.0 38.0 38.0 36.0 38.0 52-53 37.06058511875523 38.0 38.0 38.0 36.0 38.0 54-55 37.04999492814412 38.0 38.0 38.0 36.0 38.0 56-57 37.04109103766079 38.0 38.0 38.0 36.0 38.0 58-59 37.034448997639196 38.0 38.0 38.0 36.0 38.0 60-61 37.03698957300928 38.0 38.0 38.0 36.0 38.0 62-63 37.03613378701062 38.0 38.0 38.0 36.0 38.0 64-65 37.04533519101441 38.0 38.0 38.0 36.0 38.0 66-67 37.04265657006154 38.0 38.0 38.0 36.0 38.0 68-69 37.0479147817532 38.0 38.0 38.0 36.0 38.0 70-71 37.04431091592359 38.0 38.0 38.0 36.0 38.0 72-73 37.02285116531146 38.0 38.0 38.0 36.0 38.0 74-75 37.044087968754184 38.0 38.0 38.0 36.0 38.0 76-77 37.03814036263776 38.0 38.0 38.0 36.0 38.0 78-79 37.031906622761454 38.0 38.0 38.0 36.0 38.0 80-81 37.01145812888059 38.0 38.0 38.0 36.0 38.0 82-83 37.005988513521146 38.0 38.0 38.0 36.0 38.0 84-85 36.99416204912322 38.0 38.0 38.0 36.0 38.0 86-87 36.96135440718945 38.0 38.0 38.0 36.0 38.0 88-89 36.948888884852565 38.0 38.0 38.0 36.0 38.0 90-91 36.95593218015415 38.0 38.0 38.0 36.0 38.0 92-93 36.9277244512689 38.0 38.0 38.0 35.0 38.0 94-95 36.87144589995974 38.0 38.0 38.0 35.0 38.0 96-97 36.8890476493917 38.0 38.0 38.0 35.0 38.0 98-99 36.92071631742346 38.0 38.0 38.0 35.0 38.0 100 35.39230286106197 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 5.0 19 22.0 20 66.0 21 250.0 22 622.0 23 1598.0 24 3775.0 25 7618.0 26 13485.0 27 22501.0 28 34554.0 29 50938.0 30 70189.0 31 91471.0 32 116923.0 33 155067.0 34 227082.0 35 404639.0 36 1262725.0 37 5599288.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.47670206620068 19.362510725158373 16.509066681152916 22.65172052748803 2 14.714073913115739 20.95847878496079 41.78506819824037 22.542379103683103 3 18.605939015366587 26.138330295933756 30.14116156410823 25.11456912459143 4 12.688045296321956 17.911616013160657 38.410714467323956 30.98962422319343 5 13.505914174608396 37.51658123287846 35.27258461591508 13.70491997659806 6 30.084972899013074 37.51060114803705 18.614226858490703 13.790199094459174 7 26.48350737918182 32.73808239253323 23.015228670670727 17.763181557614224 8 24.452815380429026 36.61654027165192 21.023083988749345 17.90756035916971 9 25.71086188476535 16.839335825266055 21.340491624640418 36.109310665328174 10-11 24.450706936458197 26.733909905941072 28.512053726129004 20.303329431471724 12-13 25.292515594423687 24.332720892372866 28.87384410760605 21.5009194055974 14-15 22.376816641526574 25.48297009804761 26.772947125930415 25.36726613449541 16-17 21.696260538189005 28.642299751774132 27.422843973409794 22.23859573662707 18-19 21.751228912769704 27.46989948179408 29.446175022182068 21.332696583254144 20-21 22.60066281589907 26.63306676287901 29.467705166301478 21.298565254920437 22-23 22.38041971728982 26.527749861687443 29.334969166269087 21.75686125475365 24-25 22.07875154982996 26.70390744763728 29.41205912372982 21.80528187880294 26-27 21.962157087567675 26.848128711431123 29.391113623950904 21.798600577050294 28-29 21.871492865868298 26.862217449126057 29.460959824604434 21.80532986040121 30-31 22.213185708371388 26.712729907854886 29.317686687233895 21.75639769653983 32-33 21.924172684675465 26.902709969240124 29.265615517050726 21.907501829033684 34-35 22.095356870799314 26.899529155018236 29.26885204786685 21.7362619263156 36-37 22.048354184847 26.856398051373098 29.225270123162613 21.869977640617293 38-39 21.910896782275337 26.917034208989925 29.342101865538396 21.829967143196335 40-41 22.16640914829959 26.78673923950615 29.188742046066608 21.858109566127656 42-43 22.07687289370232 26.87908970375077 28.98195455240921 22.0620828501377 44-45 22.123422512486936 27.01520025304836 28.833753988101535 22.027623246363166 46-47 22.224244553791557 26.995249653374024 28.570506897083646 22.20999889575077 48-49 22.165952537418594 27.123731192570222 28.492949043588002 22.217367226423185 50-51 22.165078921543113 27.29376052018434 28.338672872128317 22.202487686144227 52-53 22.36422859275235 27.198896534414267 28.249531265755618 22.187343607077768 54-55 22.312718234188388 27.147283080014383 28.226168536927254 22.31383014886997 56-57 22.286089507947683 27.24925167344311 28.217486749361836 22.247172069247377 58-59 22.25307767091683 27.28897165451989 28.272056496807966 22.185894177755316 60-61 22.347198859061542 27.266801908243487 28.258086337414518 22.127912895280456 62-63 22.3314148088064 27.370598006368223 28.18124900548501 22.116738179340366 64-65 22.265536485444308 27.289264895275302 28.207535973538583 22.23766264574181 66-67 22.341317413844976 27.316862926842518 28.0578866117371 22.283933047575413 68-69 22.2811314717105 27.26146028134917 28.176255404341482 22.281152842598846 70-71 22.277990394333713 27.08640739071874 28.220584355972356 22.415017858975187 72-73 22.419743031442152 27.08058296064201 28.08751286394786 22.412161143967975 74-75 22.27163780354341 27.218614357292726 28.0768292401055 22.432918599058365 76-77 22.463941802762047 27.113048108048154 27.964921559107346 22.458088530082453 78-79 22.36625513171194 27.156756135299954 27.93137068804461 22.545618044943495 80-81 22.415114501380305 27.25029457993344 27.88546329808963 22.449127620596627 82-83 22.45206411030495 27.23293314510836 27.930019191091628 22.384983553495065 84-85 22.516124585602377 27.22432529201463 27.802168447747714 22.45738167463528 86-87 22.410799473113535 27.278099123848953 27.856389527410407 22.454711875627105 88-89 22.45817561613391 27.23016052002505 27.785594986091688 22.526068877749356 90-91 22.49130175446141 27.316966536143212 27.769187704515286 22.422544004880095 92-93 22.581514509898398 27.25715703774036 27.765958440450834 22.395370011910416 94-95 22.438794883372132 27.33179994774696 27.768246376330026 22.46115879255088 96-97 22.56400000893592 27.358964916006904 27.77683500146822 22.300200073588954 98-99 23.603044340738474 29.323107584536018 27.993309129446697 19.080538945278814 100 22.47653548493331 30.179641577927267 21.956146698350498 25.387676238788927 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2234.0 1 2164.5 2 2894.5 3 4006.0 4 4939.0 5 6622.0 6 8339.0 7 11432.0 8 14998.5 9 16452.0 10 16020.5 11 15104.0 12 15892.0 13 19012.5 14 25318.0 15 32373.0 16 36969.0 17 38683.0 18 37448.0 19 34231.0 20 30742.0 21 28327.0 22 28544.5 23 32602.0 24 40354.5 25 51396.0 26 65804.0 27 81986.0 28 99053.5 29 117952.5 30 135509.0 31 152353.5 32 170640.0 33 188166.5 34 204149.5 35 219058.0 36 236159.0 37 252751.0 38 264882.5 39 273167.5 40 281345.0 41 290140.5 42 296324.0 43 303761.5 44 309667.5 45 313586.5 46 316815.5 47 318446.5 48 320919.0 49 319729.0 50 315017.0 51 310203.0 52 302722.0 53 291904.0 54 279863.0 55 265065.0 56 247089.0 57 226148.5 58 202863.5 59 178642.5 60 152450.5 61 125527.0 62 100152.0 63 77889.0 64 59482.5 65 44928.0 66 33694.0 67 25390.0 68 19115.0 69 14065.5 70 10385.5 71 7599.5 72 5387.5 73 3629.5 74 2346.0 75 1525.0 76 956.5 77 565.0 78 350.5 79 220.0 80 139.5 81 82.5 82 56.0 83 47.0 84 33.5 85 20.5 86 12.5 87 11.0 88 9.5 89 5.5 90 3.0 91 2.5 92 1.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.002964224170755188 6 1.4883133911741526E-4 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 3.733672881842259E-5 34-35 1.3101539237456728E-4 36-37 1.4404376826263613E-4 38-39 1.4485439708356455E-4 40-41 9.50602149425532E-5 42-43 1.530661932839529E-4 44-45 1.5423484543033642E-4 46-47 3.8904831584550344E-5 48-49 2.9439549483303195E-4 50-51 4.3536725701807076E-4 52-53 4.5864522316347146E-4 54-55 0.001996047959004122 56-57 0.003403978034616025 58-59 0.002030042033450869 60-61 0.0034632665268762193 62-63 0.002238474920799223 64-65 0.0026349450040848636 66-67 6.278028930285945E-4 68-69 7.266049242443131E-4 70-71 4.0295683972463656E-4 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 7.877161650700185E-6 90-91 0.0 92-93 0.0 94-95 8.14417602235674E-6 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 57.0 20-21 262.0 22-23 597.0 24-25 749.0 26-27 2008.0 28-29 4982.0 30-31 14920.0 32-33 18953.0 34-35 26940.0 36-37 41925.0 38-39 49578.0 40-41 49116.0 42-43 56113.0 44-45 67715.0 46-47 69546.0 48-49 64667.0 50-51 58641.0 52-53 56400.0 54-55 60804.0 56-57 63176.0 58-59 63475.0 60-61 62499.0 62-63 60332.0 64-65 64046.0 66-67 68802.0 68-69 69689.0 70-71 72288.0 72-73 64457.0 74-75 64921.0 76-77 67856.0 78-79 69208.0 80-81 68912.0 82-83 64922.0 84-85 64260.0 86-87 65665.0 88-89 68328.0 90-91 69265.0 92-93 68932.0 94-95 79849.0 96-97 245634.0 98-99 536673.0 100-101 5295656.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.83137408791156 #Duplication Level Percentage of deduplicated Percentage of total 1 90.45578089694666 77.63943968579993 2 6.708996034321056 11.516846967522513 3 1.5855115937042332 4.082599161598467 4 0.5658283490724093 1.942632987951175 5 0.2592135089400503 1.1124325827236832 6 0.1312928448453781 0.6761427168593866 7 0.08683891104770575 0.5217452141665756 8 0.051789072861875174 0.3556101829178973 9 0.033412531416134594 0.25810591348821116 >10 0.11765130892593743 1.5901466606083314 >50 0.002897535238239049 0.16740743551363754 >100 7.164844793589812E-4 0.08644257946258388 >500 4.7285702911985486E-5 0.025670547924258734 >1k 2.3642498078033616E-5 0.02477736346325197 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 2.4805223186235878E-5 0.0 3 0.0 0.0 0.0 3.720783477935382E-5 0.0 4 0.0 3.720783477935382E-5 0.0 4.9610446372471755E-5 0.0 5 1.2402611593117939E-5 3.720783477935382E-5 0.0 7.441566955870764E-5 0.0 6 2.4805223186235878E-5 3.720783477935382E-5 0.0 7.441566955870764E-5 1.2402611593117939E-5 7 2.4805223186235878E-5 4.9610446372471755E-5 0.0 8.681828115182558E-5 1.2402611593117939E-5 8 2.4805223186235878E-5 6.20130579655897E-5 0.0 9.922089274494351E-5 1.2402611593117939E-5 9 2.4805223186235878E-5 7.441566955870764E-5 0.0 1.240261159311794E-4 2.4805223186235878E-5 10-11 4.9610446372471755E-5 7.441566955870764E-5 0.0 1.7363656230365117E-4 2.4805223186235878E-5 12-13 7.441566955870764E-5 7.441566955870764E-5 0.0 1.7363656230365117E-4 2.4805223186235878E-5 14-15 7.441566955870764E-5 9.301958694838455E-5 0.0 2.1084439708300495E-4 4.340914057591279E-5 16-17 8.681828115182558E-5 9.922089274494351E-5 0.0 2.4185092606579983E-4 6.20130579655897E-5 18-19 8.681828115182558E-5 1.1782481013462043E-4 0.0 2.542535376589178E-4 6.20130579655897E-5 20-21 8.681828115182558E-5 1.3642872752429733E-4 0.0 2.914613724382716E-4 8.06169753552666E-5 22-23 9.922089274494352E-5 1.612339507105332E-4 0.0 3.1006528982794847E-4 9.922089274494351E-5 24-25 1.1782481013462043E-4 1.7363656230365117E-4 0.0 3.348705130141844E-4 1.1162350433806145E-4 26-27 1.240261159311794E-4 1.7363656230365117E-4 0.0 3.720783477935382E-4 1.1162350433806145E-4 28-29 1.240261159311794E-4 1.7363656230365117E-4 0.0 5.829227448765431E-4 1.1162350433806145E-4 30-31 1.240261159311794E-4 1.9844178548988702E-4 0.0 0.0011782481013462042 1.2402611593117938E-4 32-33 1.3642872752429733E-4 2.04643091286446E-4 0.0 0.002740977162079065 1.4883133911741529E-4 34-35 1.3642872752429733E-4 2.7285745504859466E-4 0.0 0.004954843331450617 1.4883133911741529E-4 36-37 1.3642872752429733E-4 3.348705130141844E-4 0.0 0.008173321039864722 1.5503264491397426E-4 38-39 1.3642872752429733E-4 3.534744304038613E-4 0.0 0.013140566982908457 1.612339507105332E-4 40-41 1.3642872752429733E-4 4.09286182572892E-4 0.0 0.01798378681002101 1.612339507105332E-4 42-43 1.3642872752429733E-4 4.15487488369451E-4 0.0 0.023149474538554635 1.674352565070922E-4 44-45 1.3642872752429733E-4 4.5889662894536376E-4 0.0 0.02902211112789598 1.7363656230365117E-4 46-47 1.3642872752429733E-4 4.961044637247176E-4 0.0 0.03549627437950355 1.7983786810021012E-4 48-49 1.3642872752429733E-4 4.961044637247176E-4 0.0 0.04188982065575584 1.860391738967691E-4 50-51 1.3642872752429733E-4 5.457149100971893E-4 0.0 0.048506613940684264 1.860391738967691E-4 52-53 1.3642872752429733E-4 5.457149100971893E-4 0.0 0.05476993279520882 2.1084439708300498E-4 54-55 1.426300333208563E-4 5.457149100971893E-4 0.0 0.06110146601349553 2.480522318623588E-4 56-57 1.4883133911741529E-4 5.457149100971893E-4 0.0 0.06663303078402613 2.480522318623588E-4 58-59 1.4883133911741529E-4 5.519162158937484E-4 0.0 0.0719413485458806 2.480522318623588E-4 60-61 1.5503264491397426E-4 5.829227448765432E-4 0.0 0.07739229634105595 2.480522318623588E-4 62-63 1.7363656230365117E-4 6.13929273859338E-4 0.0 0.08240295142467559 2.604548434554767E-4 64-65 1.7363656230365117E-4 6.945462492146047E-4 0.0 0.0872833790865675 2.604548434554767E-4 66-67 1.7363656230365117E-4 7.131501666042814E-4 0.0 0.09217000805425596 2.666561492520357E-4 68-69 1.7363656230365117E-4 7.503580013836354E-4 0.0 0.097273682724824 2.7285745504859466E-4 70-71 1.9224047969332807E-4 7.689619187733123E-4 0.0 0.10193086337803979 2.7285745504859466E-4 72-73 1.9844178548988702E-4 7.751632245698713E-4 0.0 0.1059059003936341 2.9766267823483057E-4 74-75 1.9844178548988702E-4 7.813645303664302E-4 0.0 0.10891353370496519 2.9766267823483057E-4 76-77 1.9844178548988702E-4 8.247736709423429E-4 0.0 0.11187155656992381 2.9766267823483057E-4 78-79 2.1084439708300498E-4 8.433775883320199E-4 0.0 0.11381256528424677 2.9766267823483057E-4 80-81 2.1084439708300498E-4 8.433775883320199E-4 0.0 0.1145939298146132 3.100652898279485E-4 82-83 2.1084439708300498E-4 8.495788941285788E-4 0.0 0.11510243688993105 3.224679014210664E-4 84-85 2.232470086761229E-4 8.557801999251379E-4 0.0 0.1153814956507762 3.224679014210664E-4 86-87 2.3564962026924086E-4 8.557801999251379E-4 0.0 0.11549311915511426 3.224679014210664E-4 88 2.3564962026924086E-4 9.301958694838455E-4 0.0 0.11549311915511426 3.348705130141844E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11565 0.0 53.310593 1 GTATCAA 22590 0.0 39.19162 1 ATCAACG 28470 0.0 31.486902 3 TCAACGC 28470 0.0 31.471916 4 CAACGCA 29235 0.0 30.64838 5 TATCAAC 29365 0.0 30.61441 2 AACGCAG 29900 0.0 29.966177 6 ACGCAGA 34205 0.0 26.132303 7 CGCAGAG 35140 0.0 25.473404 8 TGGTATC 5085 0.0 24.584873 2 GTGGTAT 5270 0.0 24.28857 1 GCAGAGT 39860 0.0 22.46769 9 GTACATG 28580 0.0 21.184174 1 TACATGG 28810 0.0 20.955812 2 ACATGGG 28990 0.0 20.340012 3 GAGTACT 23955 0.0 20.046225 12-13 CAGAGTA 39700 0.0 19.162142 10-11 AGAGTAC 37060 0.0 19.139893 10-11 CATGGGG 21015 0.0 18.06974 4 GTACTTT 26625 0.0 18.036234 14-15 >>END_MODULE