##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138738_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8925455 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 23.69775961001428 18.0 18.0 31.0 18.0 33.0 2 31.16557049472548 32.0 30.0 33.0 27.0 33.0 3 31.749482575398115 33.0 31.0 33.0 29.0 33.0 4 32.27948916889951 33.0 33.0 33.0 31.0 34.0 5 32.542645500985664 33.0 33.0 34.0 31.0 34.0 6 36.94530474916965 38.0 37.0 38.0 35.0 38.0 7 37.126908600177806 38.0 38.0 38.0 36.0 38.0 8 37.23057726468846 38.0 38.0 38.0 36.0 38.0 9 37.342044299142174 38.0 38.0 38.0 37.0 38.0 10-11 37.36954149676403 38.0 38.0 38.0 37.0 38.0 12-13 37.39361276259866 38.0 38.0 38.0 37.0 38.0 14-15 37.38549973082605 38.0 38.0 38.0 37.0 38.0 16-17 37.38991468782264 38.0 38.0 38.0 37.0 38.0 18-19 37.27067258755996 38.0 38.0 38.0 37.0 38.0 20-21 37.37772855448874 38.0 38.0 38.0 37.0 38.0 22-23 37.395014813972296 38.0 38.0 38.0 37.0 38.0 24-25 37.40291916116957 38.0 38.0 38.0 37.0 38.0 26-27 37.37346912836469 38.0 38.0 38.0 37.0 38.0 28-29 37.3463231811647 38.0 38.0 38.0 37.0 38.0 30-31 37.351186388847424 38.0 38.0 38.0 37.0 38.0 32-33 37.33569515559816 38.0 38.0 38.0 37.0 38.0 34-35 37.313624317609076 38.0 38.0 38.0 37.0 38.0 36-37 37.286456532790865 38.0 38.0 38.0 37.0 38.0 38-39 37.243266550165586 38.0 38.0 38.0 37.0 38.0 40-41 37.26746447658529 38.0 38.0 38.0 37.0 38.0 42-43 37.24957001169217 38.0 38.0 38.0 37.0 38.0 44-45 37.21822851814332 38.0 38.0 38.0 37.0 38.0 46-47 37.184416849436374 38.0 38.0 38.0 37.0 38.0 48-49 37.15337226987465 38.0 38.0 38.0 37.0 38.0 50-51 37.12449499619203 38.0 38.0 38.0 36.0 38.0 52-53 37.102647998535645 38.0 38.0 38.0 36.0 38.0 54-55 37.08961002020794 38.0 38.0 38.0 36.0 38.0 56-57 37.07808923981602 38.0 38.0 38.0 36.0 38.0 58-59 37.06679413394161 38.0 38.0 38.0 36.0 38.0 60-61 37.06339871079432 38.0 38.0 38.0 36.0 38.0 62-63 37.05684240793309 38.0 38.0 38.0 36.0 38.0 64-65 37.06165970539689 38.0 38.0 38.0 36.0 38.0 66-67 37.05068140440741 38.0 38.0 38.0 36.0 38.0 68-69 37.05111102554382 38.0 38.0 38.0 36.0 38.0 70-71 37.04238521003328 38.0 38.0 38.0 36.0 38.0 72-73 37.0171635936115 38.0 38.0 38.0 36.0 38.0 74-75 37.037202048284385 38.0 38.0 38.0 36.0 38.0 76-77 37.02850122499221 38.0 38.0 38.0 36.0 38.0 78-79 37.019730888261904 38.0 38.0 38.0 36.0 38.0 80-81 36.99858260171827 38.0 38.0 38.0 36.0 38.0 82-83 36.988492741254696 38.0 38.0 38.0 36.0 38.0 84-85 36.97582857434982 38.0 38.0 38.0 36.0 38.0 86-87 36.945009908665995 38.0 38.0 38.0 36.0 38.0 88-89 36.9290632211037 38.0 38.0 38.0 36.0 38.0 90-91 36.934845795514256 38.0 38.0 38.0 36.0 38.0 92-93 36.90503609678973 38.0 38.0 38.0 35.0 38.0 94-95 36.846014781759116 38.0 38.0 38.0 35.0 38.0 96-97 36.864764562067094 38.0 38.0 38.0 35.0 38.0 98-99 36.89167183863779 38.0 38.0 38.0 35.0 38.0 100 35.32407374502177 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 7.0 19 32.0 20 83.0 21 232.0 22 767.0 23 1908.0 24 4409.0 25 8520.0 26 15205.0 27 24846.0 28 38674.0 29 55102.0 30 75074.0 31 98169.0 32 127702.0 33 170627.0 34 251675.0 35 448554.0 36 1380784.0 37 6223085.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.68299039096606 19.776795692768605 16.1977736709221 23.342440245343234 2 14.3864374421248 20.85881336021525 42.18275706952755 22.571992128132404 3 18.346190754420924 26.10300539300237 30.345713467828812 25.20509038474789 4 12.495687894902836 18.26450304214183 38.524691458306606 30.71511760464873 5 13.366461433934123 37.45165348444486 35.76923956028984 13.412645521331177 6 29.813335854963825 37.83569485970555 18.698054393272624 13.652914892058007 7 26.23534598516266 32.50604030830922 23.161575516318216 18.09703819020991 8 23.947193728498995 37.117883626100856 21.255006047310754 17.679916598089395 9 25.16454343223959 17.029988947342183 21.460250485829572 36.34521713458866 10-11 24.140836517578094 26.795311835643115 28.88147999177633 20.182371655002463 12-13 24.93444451484235 24.22964007043003 29.01038821048273 21.825527204244892 14-15 22.082871078602835 25.595728799901945 26.560727331069096 25.76067279042612 16-17 21.749182534671903 28.795103442905713 27.287348376077187 22.1683656463452 18-19 21.76393808494917 27.69606703523798 29.020974280862994 21.519020598949858 20-21 22.431871700233522 26.91802195936909 28.98508433425141 21.66502200614598 22-23 22.214712101174758 27.00775227498778 28.84054923068287 21.936986393154594 24-25 22.06121873737832 27.160544735034964 28.95014334616467 21.82809318142205 26-27 21.972932607195578 27.320013212352713 28.905540363093156 21.801513817358558 28-29 21.709880113280434 27.14098060132295 29.06103560832241 22.08810367707421 30-31 22.14642587694819 26.983870379667312 29.11958805101122 21.750115692373278 32-33 21.82893212641103 27.291124319808112 28.953519644967844 21.92642390881301 34-35 21.927333848927812 27.273475931069562 29.169795251160792 21.629394968841833 36-37 22.129387904016397 27.11477564251497 28.87037252476521 21.885463928703423 38-39 21.85258370157923 27.13479808811999 29.0700461012288 21.94257210907197 40-41 22.101932475613705 26.973452867184545 29.00593378523964 21.918680871962117 42-43 22.12901691541007 27.033026540091647 28.858629554635385 21.979326989862898 44-45 21.99370812072811 27.292384197226617 28.715254535642405 21.99865314640287 46-47 22.242653541216278 27.076694533182344 28.38724476939421 22.293407156207167 48-49 22.142503279959236 27.14563019012932 28.372954204893613 22.338912325017823 50-51 22.000173208551992 27.321549219997994 28.418843192281066 22.259434379168944 52-53 22.145678746818653 27.320512360946815 28.473647106618394 22.060161785616135 54-55 22.14504974331998 27.301290161412656 28.2541323277688 22.299527767498567 56-57 22.276597783811194 27.550339804294076 28.00249424358666 22.170568168308062 58-59 21.97329109647158 27.7884752686561 28.328878791724062 21.909354843148257 60-61 22.25165454297027 28.00217481701004 27.886201429785572 21.85996921023412 62-63 22.00587805370337 28.220434351183677 27.883135845768308 21.89055174934465 64-65 21.990510685670383 28.11057904887342 27.87899713062703 22.01991313482917 66-67 22.085244532122324 28.03454418985436 27.78556906862179 22.094642209401528 68-69 22.065160604229174 27.894078493157508 27.933892063235216 22.106868839378105 70-71 22.06704438528127 27.59244447131195 28.08644128768486 22.254069855721916 72-73 22.26842999383935 27.369707273573912 28.03217346665769 22.329689265929048 74-75 22.14064679979649 27.493143063255175 28.010196553179473 22.356013583768867 76-77 22.26894089911655 27.46978127478329 27.912369783977276 22.34890804212288 78-79 22.20022501523337 27.445443711051976 27.91207708655068 22.44225418716397 80-81 22.22458144448101 27.51293919984799 27.910996706979425 22.35148264869157 82-83 22.324018036930884 27.48573592875892 27.93323660726405 22.257009427046146 84-85 22.428182060890112 27.446501491142232 27.826613711181874 22.298702736785785 86-87 22.255979646724853 27.4875553842232 27.87925981900307 22.377205150048873 88-89 22.33423852951323 27.450548867325363 27.863509389567543 22.351703213593865 90-91 22.369184148564056 27.548006299246836 27.816179098611588 22.266630453577523 92-93 22.433743289596393 27.485711993831323 27.828270035638266 22.25227468093402 94-95 22.250926626034985 27.592498031529285 27.8217005731196 22.33487476931613 96-97 22.381506383218063 27.67494238070797 27.83894245698708 22.10460877908688 98-99 23.45958089171413 29.57866765834175 28.054560296156072 18.907191153788048 100 22.40894154327487 30.474143314200543 21.940572250917466 25.176342891607124 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1618.0 1 1600.0 2 2178.5 3 3048.0 4 3971.0 5 5483.5 6 6862.5 7 8808.5 8 11001.5 9 11973.0 10 11885.5 11 11769.5 12 12890.5 13 15744.0 14 21372.0 15 27964.5 16 32523.0 17 34661.5 18 34238.5 19 31591.0 20 28425.0 21 26644.5 22 27438.5 23 31754.5 24 39797.0 25 51563.0 26 66913.0 27 84679.5 28 103215.0 29 124357.0 30 146287.0 31 166776.5 32 188066.0 33 208969.5 34 230501.0 35 251205.5 36 272347.0 37 291602.5 38 305854.0 39 318608.0 40 331973.0 41 342189.0 42 350227.0 43 370830.5 44 385597.5 45 388503.0 46 385408.0 47 375433.5 48 368813.0 49 362805.5 50 355036.0 51 343937.0 52 330716.0 53 314019.5 54 294413.0 55 273682.5 56 251853.5 57 228774.5 58 203990.0 59 177222.0 60 148708.0 61 120699.0 62 95403.5 63 73719.5 64 55767.0 65 41650.5 66 30847.5 67 23172.0 68 17575.0 69 12942.0 70 9444.0 71 6900.0 72 4876.5 73 3171.5 74 2076.0 75 1369.5 76 833.5 77 502.5 78 322.5 79 211.5 80 135.5 81 84.5 82 51.0 83 30.0 84 19.0 85 14.5 86 11.5 87 7.5 88 3.0 89 1.0 90 0.5 91 0.5 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0033947849157269856 6 1.4565083796848452E-4 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 5.601955306480174E-6 14-15 1.1203910612960348E-5 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 6.181387650722601E-5 34-35 1.126570791737054E-4 36-37 9.609973569746221E-5 38-39 1.704861144458511E-4 40-41 6.287480888201559E-5 42-43 1.6674351242679025E-4 44-45 1.5634131671930833E-4 46-47 5.8384430413757616E-5 48-49 3.5907536797719953E-4 50-51 3.084526343100644E-4 52-53 4.6599775675849095E-4 54-55 0.0020340687254049947 56-57 0.0031298380563560095 58-59 0.001987457613644355 60-61 0.003162978672583554 62-63 0.0019586496112018346 64-65 0.002483592298003982 66-67 7.029210549363202E-4 68-69 4.928665251520989E-4 70-71 3.4303418918206084E-4 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 1.4612381377601249E-5 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 58.0 20-21 275.0 22-23 606.0 24-25 754.0 26-27 1776.0 28-29 4730.0 30-31 15148.0 32-33 19577.0 34-35 27402.0 36-37 43929.0 38-39 51291.0 40-41 50379.0 42-43 57797.0 44-45 69581.0 46-47 71013.0 48-49 66554.0 50-51 60847.0 52-53 59633.0 54-55 64165.0 56-57 66972.0 58-59 66557.0 60-61 68622.0 62-63 68034.0 64-65 73560.0 66-67 82330.0 68-69 84806.0 70-71 98330.0 72-73 70676.0 74-75 68949.0 76-77 72307.0 78-79 73173.0 80-81 73087.0 82-83 68991.0 84-85 68378.0 86-87 71095.0 88-89 73684.0 90-91 73409.0 92-93 73562.0 94-95 86064.0 96-97 272486.0 98-99 595642.0 100-101 5909226.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.91550580965216 #Duplication Level Percentage of deduplicated Percentage of total 1 89.65526048870149 76.13121792894208 2 7.150616039275434 12.1439635565137 3 1.8034796239603885 4.59430153457993 4 0.6407780026233733 2.1764795281784943 5 0.2876481172222321 1.2212892684559977 6 0.15746012295212367 0.8022483591197761 7 0.08909290632082992 0.529575844299966 8 0.05249555405109685 0.35661492200054584 9 0.03828344905273571 0.29257725964059916 >10 0.12259895374257858 1.5521696400626648 >50 0.0017015887555247263 0.09403753032369809 >100 5.207322752255886E-4 0.06404119640152625 >500 6.442106696429683E-5 0.04148343148104167 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.2407821225920695E-5 0.0 1.1203910612960348E-5 0.0 3 0.0 2.2407821225920695E-5 0.0 2.2407821225920695E-5 0.0 4 0.0 5.601955306480174E-5 0.0 3.361173183888104E-5 0.0 5 0.0 5.601955306480174E-5 0.0 4.481564245184139E-5 0.0 6 0.0 5.601955306480174E-5 0.0 4.481564245184139E-5 0.0 7 0.0 5.601955306480174E-5 0.0 5.601955306480174E-5 0.0 8 0.0 6.722346367776208E-5 0.0 7.842737429072244E-5 0.0 9 0.0 1.1203910612960348E-4 0.0 7.842737429072244E-5 0.0 10-11 0.0 1.1203910612960348E-4 0.0 1.1764106143608364E-4 1.1203910612960348E-5 12-13 0.0 1.1203910612960348E-4 0.0 1.4565083796848452E-4 1.1203910612960348E-5 14-15 0.0 1.680586591944052E-4 0.0 1.7926256980736556E-4 1.1203910612960348E-5 16-17 0.0 1.7926256980736556E-4 0.0 1.9046648042032592E-4 1.1203910612960348E-5 18-19 0.0 1.8486452511384574E-4 0.0 2.352821228721673E-4 2.2407821225920695E-5 20-21 0.0 1.9046648042032592E-4 0.0 2.744958100175285E-4 2.2407821225920695E-5 22-23 0.0 1.9046648042032592E-4 0.0 3.3051536308233024E-4 2.2407821225920695E-5 24-25 0.0 2.1847625695272678E-4 0.0 3.641270949212113E-4 3.361173183888104E-5 26-27 0.0 2.352821228721673E-4 0.0 4.1454469267953285E-4 3.361173183888104E-5 28-29 0.0 2.408840781786475E-4 0.0 6.106131284063389E-4 3.921368714536122E-5 30-31 0.0 3.081075418564096E-4 0.0 0.0014621103349913254 5.041759775832156E-5 32-33 0.0 3.2491340777585006E-4 0.0 0.003439600558178827 5.601955306480174E-5 34-35 0.0 3.7533100553417166E-4 0.0 0.005994092177933785 6.722346367776208E-5 36-37 0.0 4.4255446921193374E-4 0.0 0.009786615920420863 6.722346367776208E-5 38-39 0.0 4.705642457443346E-4 0.0 0.015237318433626072 8.40293295972026E-5 40-41 0.0 5.321857541156164E-4 0.0 0.021293032119931138 1.0083519551664312E-4 42-43 0.0 5.545935753415371E-4 0.0 0.026855773739265953 1.0083519551664312E-4 44-45 0.0 6.274189943257795E-4 0.0 0.03367335334725233 1.0083519551664312E-4 46-47 0.0 6.722346367776208E-4 0.0 0.041196779323855195 1.064371508231233E-4 48-49 0.0 6.834385473905812E-4 0.0 0.048484923177585904 1.2324301674256384E-4 50-51 0.0 7.058463686165019E-4 0.0 0.05620441758991558 1.2324301674256384E-4 52-53 0.0 7.058463686165019E-4 0.0 0.06377826116427678 1.3444692735552417E-4 54-55 0.0 7.170502792294623E-4 0.0 0.07120085194536302 1.3444692735552417E-4 56-57 0.0 7.282541898424226E-4 0.0 0.07865705445828812 1.3444692735552417E-4 58-59 0.0 7.338561451489028E-4 0.0 0.0858947807142605 1.3444692735552417E-4 60-61 0.0 7.842737429072243E-4 0.0 0.09276837987531168 1.3444692735552417E-4 62-63 0.0 7.954776535201846E-4 0.0 0.09915460892469907 1.3444692735552417E-4 64-65 0.0 8.963128490368278E-4 0.0 0.10560806143776424 1.3444692735552417E-4 66-67 0.0 9.075167596497882E-4 0.0 0.1118654455151026 1.3444692735552417E-4 68-69 0.0 9.243226255692288E-4 0.0 0.11829088825163535 1.3444692735552417E-4 70-71 0.0 9.411284914886692E-4 0.0 0.12351191059727487 1.3444692735552417E-4 72-73 0.0 9.411284914886692E-4 0.0 0.12733244411629435 1.5685474858144488E-4 74-75 0.0 9.523324021016295E-4 0.0 0.1303126843393418 1.6805865919440523E-4 76-77 0.0 9.803421786340305E-4 0.0 0.13348899299811606 1.7926256980736556E-4 78-79 0.0 9.97148044553471E-4 0.0 0.1358530181374507 1.7926256980736556E-4 80-81 0.0 9.97148044553471E-4 0.0 0.1366204860144385 1.7926256980736556E-4 82-83 0.0 9.97148044553471E-4 0.0 0.13716947763447354 1.9046648042032592E-4 84-85 0.0 0.0010083519551664312 0.0 0.1374047597573457 1.9046648042032592E-4 86-87 0.0 0.0010419636870053124 0.0 0.1374999929975559 1.9046648042032592E-4 88 0.0 0.0011091871506830745 0.0 0.13751679886347531 1.9046648042032592E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11180 0.0 48.221058 1 GTATCAA 20165 0.0 35.773987 1 CTTATAC 7515 0.0 34.78726 1 ATCAACG 24515 0.0 29.30399 3 TCAACGC 24745 0.0 29.08349 4 CAACGCA 25270 0.0 28.411535 5 TATCAAC 25665 0.0 28.224333 2 AACGCAG 26015 0.0 27.646317 6 TATACAC 11355 0.0 26.941816 3 TTATACA 11470 0.0 24.508116 2 ACGCAGA 29805 0.0 24.073393 7 CGCAGAG 30715 0.0 23.415882 8 TACACAT 15460 0.0 20.203255 5 GCAGAGT 35680 0.0 20.181463 9 GTACATG 25145 0.0 20.129875 1 TACATGG 25535 0.0 19.805672 2 TGGTATC 5690 0.0 19.776592 2 ACACATC 14235 0.0 19.626781 6 GTGGTAT 5800 0.0 19.62283 1 ACATCTC 14600 0.0 19.458466 8 >>END_MODULE