##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138737_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9444452 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 22.79110159064814 18.0 18.0 30.0 18.0 33.0 2 30.817532769503195 32.0 29.0 33.0 27.0 33.0 3 31.57109316665488 33.0 31.0 33.0 29.0 33.0 4 32.16796898327187 33.0 33.0 33.0 31.0 34.0 5 32.47752055916002 33.0 33.0 34.0 31.0 34.0 6 36.90402206501764 38.0 37.0 38.0 35.0 38.0 7 37.10273089428587 38.0 38.0 38.0 36.0 38.0 8 37.192405340193375 38.0 38.0 38.0 36.0 38.0 9 37.31292922024486 38.0 38.0 38.0 37.0 38.0 10-11 37.342183485076745 38.0 38.0 38.0 37.0 38.0 12-13 37.366432271560065 38.0 38.0 38.0 37.0 38.0 14-15 37.35759782568644 38.0 38.0 38.0 37.0 38.0 16-17 37.3610571582131 38.0 38.0 38.0 37.0 38.0 18-19 37.250632117141365 38.0 38.0 38.0 37.0 38.0 20-21 37.352726665201246 38.0 38.0 38.0 37.0 38.0 22-23 37.36790806687944 38.0 38.0 38.0 37.0 38.0 24-25 37.373603024429336 38.0 38.0 38.0 37.0 38.0 26-27 37.34562696685987 38.0 38.0 38.0 37.0 38.0 28-29 37.32133237105608 38.0 38.0 38.0 37.0 38.0 30-31 37.327032116783656 38.0 38.0 38.0 37.0 38.0 32-33 37.31362897951442 38.0 38.0 38.0 37.0 38.0 34-35 37.29516612576222 38.0 38.0 38.0 37.0 38.0 36-37 37.269169009385756 38.0 38.0 38.0 37.0 38.0 38-39 37.232993193585614 38.0 38.0 38.0 37.0 38.0 40-41 37.24019500981467 38.0 38.0 38.0 37.0 38.0 42-43 37.215307382787756 38.0 38.0 38.0 37.0 38.0 44-45 37.18053390771122 38.0 38.0 38.0 37.0 38.0 46-47 37.14285977047268 38.0 38.0 38.0 36.0 38.0 48-49 37.109500402529726 38.0 38.0 38.0 36.0 38.0 50-51 37.08078805213323 38.0 38.0 38.0 36.0 38.0 52-53 37.062442632996195 38.0 38.0 38.0 36.0 38.0 54-55 37.04504950111261 38.0 38.0 38.0 36.0 38.0 56-57 37.035462842902085 38.0 38.0 38.0 36.0 38.0 58-59 37.02332852556263 38.0 38.0 38.0 36.0 38.0 60-61 37.021221283768384 38.0 38.0 38.0 36.0 38.0 62-63 37.017304461053 38.0 38.0 38.0 36.0 38.0 64-65 37.023737065160695 38.0 38.0 38.0 36.0 38.0 66-67 37.017328214365534 38.0 38.0 38.0 36.0 38.0 68-69 37.01945707907717 38.0 38.0 38.0 36.0 38.0 70-71 37.01439086736892 38.0 38.0 38.0 36.0 38.0 72-73 36.98862151035689 38.0 38.0 38.0 36.0 38.0 74-75 37.008333832077795 38.0 38.0 38.0 36.0 38.0 76-77 36.999724848536204 38.0 38.0 38.0 36.0 38.0 78-79 36.98878796786091 38.0 38.0 38.0 36.0 38.0 80-81 36.96316442081434 38.0 38.0 38.0 36.0 38.0 82-83 36.95254126601707 38.0 38.0 38.0 36.0 38.0 84-85 36.935986673183336 38.0 38.0 38.0 35.5 38.0 86-87 36.89981274316855 38.0 38.0 38.0 35.0 38.0 88-89 36.87825312352594 38.0 38.0 38.0 35.0 38.0 90-91 36.88442488804698 38.0 38.0 38.0 35.0 38.0 92-93 36.84983671054018 38.0 38.0 38.0 35.0 38.0 94-95 36.787880151976104 38.0 38.0 38.0 35.0 38.0 96-97 36.80080672671242 38.0 38.0 38.0 35.0 38.0 98-99 36.82788039071255 38.0 38.0 38.0 35.0 38.0 100 35.20176263319476 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 4.0 19 39.0 20 110.0 21 294.0 22 867.0 23 2191.0 24 5083.0 25 9750.0 26 17016.0 27 27659.0 28 42370.0 29 60864.0 30 83604.0 31 109326.0 32 141091.0 33 189208.0 34 281840.0 35 505130.0 36 1553561.0 37 6414444.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.983277801613056 19.445617384682564 17.16836508883734 22.402739724867043 2 14.641738874844194 20.924210319455273 41.934577040573664 22.499473765126872 3 18.622223925750273 26.344757747723214 30.064539477780183 24.968478848746333 4 12.675981623920581 18.006942065034583 38.37759988615538 30.93947642488945 5 13.43443958666651 37.65964047737286 35.339780330552436 13.566139605408193 6 29.96756294308453 37.61022484645736 18.595873023772175 13.82633918668593 7 26.4905286712801 32.72632787231359 22.985031104507822 17.798112351898485 8 24.399658127332323 36.8201987791351 20.936693838880224 17.84344925465236 9 25.66591476138584 16.998148754422175 21.310267657668227 36.02566882652376 10-11 24.50100863448721 26.82230265980493 28.38742258417958 20.28926612152828 12-13 25.32992124158408 24.354226624713284 28.705024781218093 21.610827352484545 14-15 22.413555598567285 25.53779721682105 26.52620819079815 25.522438993813513 16-17 21.770712583429933 28.750561705432986 27.227090571268718 22.25163513986836 18-19 21.81789901626902 27.58422087379977 29.17661607047185 21.421264039459356 20-21 22.7207965591478 26.757456224704292 29.095347622489072 21.42639959365884 22-23 22.494613893995076 26.683353112182758 28.995261815732803 21.82677117808936 24-25 22.156011342303227 26.89929647798217 29.10193239161673 21.842759788097872 26-27 22.035537678775093 27.045482088325475 29.088514703752615 21.83046552914682 28-29 21.906558126353215 26.960947561643955 29.201492031714736 21.931002280288087 30-31 22.22166385036757 26.995392972294102 28.97033830241242 21.812604874925913 32-33 22.135785326694513 27.008529285172898 28.949127092809245 21.906558295323343 34-35 22.20546680425654 26.99581414833534 28.951517904940914 21.847201142467195 36-37 22.11656707601563 26.984848452421208 28.900118995133184 21.998465476429974 38-39 21.957149514103016 27.041230856176313 29.035049221883135 21.966570407837537 40-41 22.20856519749321 26.909718519246734 28.94901697030735 21.93269931295271 42-43 22.16780624999047 26.974722755620768 28.707509658369034 22.14996133601973 44-45 22.14174025106724 27.16770548643352 28.5766737884605 22.113880474038744 46-47 22.33729005313223 27.08268029015072 28.255631181100426 22.324398475616626 48-49 22.26120486803117 27.184390892297632 28.186736383202888 22.367667856468305 50-51 22.218234223518145 27.42755502569281 27.982764856580562 22.371445894208478 52-53 22.421632954470695 27.403516770370622 27.833260484975032 22.34158979018365 54-55 22.445828147026056 27.34582033463166 27.743748423488597 22.464603094853693 56-57 22.45831515096165 27.536994331141095 27.61673024892189 22.38796026897537 58-59 22.321864930581185 27.57001196542948 27.800094438182455 22.30802866580688 60-61 22.442876384522524 27.70027716132562 27.64734559989152 22.209500854260337 62-63 22.3368959817651 27.811710628185416 27.613532970118104 22.23786041993138 64-65 22.324006461912145 27.69472501546734 27.5979228408735 22.38334568174701 66-67 22.436749884244417 27.709791567694893 27.44853015997452 22.404928388086176 68-69 22.41108648439655 27.645243249050626 27.599958144110847 22.343712122441975 70-71 22.368654555930636 27.34426344306135 27.736941471464565 22.55014052954345 72-73 22.48309282146856 27.351904588028013 27.588526248758598 22.576476341744822 74-75 22.337665201107637 27.49999624172804 27.579803146725943 22.582535410438375 76-77 22.514374178828298 27.40220179259894 27.54064977697757 22.542774251595187 78-79 22.47717967627419 27.394401359455422 27.464198020600637 22.66422094366975 80-81 22.488177244296427 27.49257284911702 27.400219706116157 22.61903020047039 82-83 22.57940489741424 27.428880955530026 27.49415238783572 22.497561759220012 84-85 22.625129170999738 27.4259414126988 27.37401023645273 22.57491917984873 86-87 22.465939173721402 27.529197243638304 27.47761740811161 22.527246174528685 88-89 22.596273760220665 27.430164893231296 27.414074711074765 22.559486635473274 90-91 22.60644581446398 27.49865406239669 27.408730879818517 22.486169243320816 92-93 22.66419718259375 27.51195056179714 27.357794778814227 22.46605747679489 94-95 22.49179178757602 27.55052086715458 27.369458527339813 22.588228817929583 96-97 22.64744705518649 27.602700569467544 27.431236955610395 22.318615419735572 98-99 23.682334423193073 29.51814996789212 27.636535767329846 19.162979841584963 100 22.627388073480738 30.385853454572416 21.623916390064185 25.362842081882665 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 3106.0 1 2724.5 2 2664.5 3 3429.5 4 4784.5 5 6690.0 6 7987.0 7 8309.5 8 8103.5 9 8172.0 10 8700.0 11 10177.5 12 12962.5 13 19628.5 14 30135.5 15 40495.5 16 48146.5 17 50783.0 18 50024.0 19 45237.5 20 39442.0 21 36185.5 22 35873.0 23 40205.0 24 48327.0 25 60987.0 26 78095.0 27 96407.5 28 114790.0 29 135242.0 30 155710.5 31 174903.5 32 196418.0 33 218332.5 34 239374.5 35 260079.5 36 282218.0 37 301447.0 38 313380.5 39 323911.5 40 334886.0 41 342724.0 42 347433.0 43 360200.0 44 371265.5 45 375893.5 46 377486.5 47 375767.5 48 377759.5 49 377393.0 50 372658.0 51 367201.0 52 359936.0 53 345725.0 54 328242.0 55 310702.5 56 289058.0 57 262457.5 58 235762.5 59 208381.0 60 177061.5 61 143955.0 62 113218.0 63 87866.0 64 66764.5 65 49708.0 66 36429.5 67 27147.5 68 20446.5 69 15117.5 70 10956.5 71 7539.0 72 5081.0 73 3328.5 74 2181.5 75 1420.0 76 896.0 77 542.0 78 331.0 79 214.5 80 153.5 81 110.5 82 75.0 83 49.5 84 33.5 85 22.0 86 14.0 87 8.0 88 5.5 89 5.0 90 3.0 91 1.5 92 2.0 93 2.0 94 1.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0027741154277664813 6 7.411758776475331E-5 7 1.0588226823536188E-5 8 0.0 9 0.0 10-11 0.0 12-13 1.0588226823536188E-5 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 5.848710035099704E-5 34-35 1.5458315054319986E-4 36-37 1.7121572582198528E-4 38-39 1.7216909221532607E-4 40-41 1.1368309797052393E-4 42-43 1.9065042680911051E-4 44-45 1.9206033548001915E-4 46-47 6.64228542000084E-5 48-49 3.238152674097185E-4 50-51 4.903561044938714E-4 52-53 4.321413793736759E-4 54-55 0.0021191529848613435 56-57 0.003342423493715782 58-59 0.0019732440907014744 60-61 0.0036393893456876905 62-63 0.002231254033420753 64-65 0.0028463397234754105 66-67 8.248834460764359E-4 68-69 8.633766624788845E-4 70-71 4.1155898420362904E-4 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 6.695872275968501E-6 90-91 0.0 92-93 0.0 94-95 3.457762531657545E-5 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 1028.0 20-21 3154.0 22-23 1892.0 24-25 2030.0 26-27 3272.0 28-29 6645.0 30-31 17604.0 32-33 21997.0 34-35 30592.0 36-37 48631.0 38-39 57642.0 40-41 56064.0 42-43 63444.0 44-45 77244.0 46-47 78695.0 48-49 73285.0 50-51 92515.0 52-53 62367.0 54-55 67280.0 56-57 71063.0 58-59 71894.0 60-61 71109.0 62-63 68263.0 64-65 72849.0 66-67 79317.0 68-69 83223.0 70-71 87916.0 72-73 73430.0 74-75 71474.0 76-77 74279.0 78-79 77527.0 80-81 76679.0 82-83 71640.0 84-85 69846.0 86-87 72380.0 88-89 77550.0 90-91 79895.0 92-93 78462.0 94-95 87818.0 96-97 282148.0 98-99 635788.0 100-101 6244521.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.94998822991234 #Duplication Level Percentage of deduplicated Percentage of total 1 89.3267842186727 74.98982483773493 2 7.33308855817232 12.312253962949422 3 1.83156864332538 4.612804981483264 4 0.6972705525541264 2.3414341871993356 5 0.3061033484108507 1.2848686248113836 6 0.15835663702320332 0.7976422688535852 7 0.09456732109801999 0.5557247845179184 8 0.06288823809532937 0.42235734783222606 9 0.042288742287296524 0.3195125475548706 >10 0.1414146579361141 1.8914874683457976 >50 0.004145997389741757 0.2361625062196079 >100 0.001454910689072079 0.17747330705194472 >500 2.2725021513949222E-5 0.010836106839364678 >1k 4.544932432367952E-5 0.0476170686063885 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.0588226823536188E-5 0.0 0.0 0.0 3 0.0 1.0588226823536188E-5 0.0 0.0 0.0 4 0.0 5.2941134117680944E-5 0.0 0.0 0.0 5 0.0 5.2941134117680944E-5 0.0 0.0 0.0 6 0.0 6.352936094121714E-5 0.0 0.0 0.0 7 0.0 6.352936094121714E-5 0.0 0.0 0.0 8 0.0 9.52940414118257E-5 0.0 0.0 0.0 9 0.0 2.1176453647072377E-4 0.0 0.0 0.0 10-11 1.0588226823536188E-5 2.1176453647072377E-4 0.0 0.0 0.0 12-13 1.0588226823536188E-5 2.1176453647072377E-4 0.0 0.0 0.0 14-15 1.0588226823536188E-5 3.3352914494138994E-4 0.0 0.0 0.0 16-17 1.0588226823536188E-5 3.494114851766942E-4 0.0 0.0 0.0 18-19 1.0588226823536188E-5 3.8117616564730273E-4 0.0 5.294113411768094E-6 0.0 20-21 1.0588226823536188E-5 4.1294084611791134E-4 0.0 1.0588226823536188E-5 0.0 22-23 1.0588226823536188E-5 5.188231143532732E-4 0.0 2.6470567058840472E-5 0.0 24-25 1.0588226823536188E-5 5.505877948238818E-4 0.0 4.235290729414475E-5 1.0588226823536188E-5 26-27 1.0588226823536188E-5 5.611760216474179E-4 0.0 8.999992800005761E-5 1.0588226823536188E-5 28-29 1.0588226823536188E-5 5.611760216474179E-4 0.0 2.8588212423547705E-4 1.0588226823536188E-5 30-31 1.0588226823536188E-5 6.141171557650989E-4 0.0 9.688227543535612E-4 1.0588226823536188E-5 32-33 1.0588226823536188E-5 6.352936094121713E-4 0.0 0.0028111742216488577 1.0588226823536188E-5 34-35 1.0588226823536188E-5 7.411758776475332E-4 0.0 0.005129995896003284 1.0588226823536188E-5 36-37 1.0588226823536188E-5 8.470581458828951E-4 0.0 0.008931169325652775 1.0588226823536188E-5 38-39 1.0588226823536188E-5 8.682345995299674E-4 0.0 0.014722929398127069 1.0588226823536188E-5 40-41 1.0588226823536188E-5 8.947051665888078E-4 0.0 0.020821748048483912 1.0588226823536188E-5 42-43 1.0588226823536188E-5 9.211757336476484E-4 0.0 0.026285273089428587 1.0588226823536188E-5 44-45 1.0588226823536188E-5 9.952933214124019E-4 0.0 0.032071739048491116 1.0588226823536188E-5 46-47 1.0588226823536188E-5 0.0010482344555300827 0.0 0.03896996882402494 1.0588226823536188E-5 48-49 1.0588226823536188E-5 0.0010482344555300827 0.0 0.046074669022617726 1.0588226823536188E-5 50-51 1.0588226823536188E-5 0.0011276461567066042 0.0 0.0530470163859163 1.0588226823536188E-5 52-53 1.0588226823536188E-5 0.0011435284969419084 0.0 0.060035246089450184 1.0588226823536188E-5 54-55 1.0588226823536188E-5 0.0011488226103536763 0.0 0.0665205350188661 1.0588226823536188E-5 56-57 1.0588226823536188E-5 0.0011647049505889807 0.0 0.07161876623439878 1.0588226823536188E-5 58-59 1.0588226823536188E-5 0.001180587290824285 0.0 0.07701346780099047 1.0588226823536188E-5 60-61 1.0588226823536188E-5 0.0012282343115301978 0.0 0.0823022870993468 1.0588226823536188E-5 62-63 1.0588226823536188E-5 0.0012494107651772701 0.0 0.08783992972805621 1.0588226823536188E-5 64-65 1.0588226823536188E-5 0.0014399988480009215 0.0 0.0928058081082947 1.0588226823536188E-5 66-67 1.0588226823536188E-5 0.0014399988480009215 0.0 0.09765521599347426 1.0588226823536188E-5 68-69 1.0588226823536188E-5 0.001466469415059762 0.0 0.10255227089935975 1.0588226823536188E-5 70-71 1.0588226823536188E-5 0.00147176352847153 0.0 0.1072746200626569 1.0588226823536188E-5 72-73 1.0588226823536188E-5 0.0014770576418832982 0.0 0.11063638207912962 1.0588226823536188E-5 74-75 1.0588226823536188E-5 0.001514116435765675 0.0 0.11330461523866076 1.0588226823536188E-5 76-77 1.0588226823536188E-5 0.001567057569883356 0.0 0.11579284854219175 1.0588226823536188E-5 78-79 1.0588226823536188E-5 0.0015988222503539645 0.0 0.11766167057654589 1.0588226823536188E-5 80-81 1.0588226823536188E-5 0.0015988222503539645 0.0 0.11825990539207569 1.0588226823536188E-5 82-83 1.0588226823536188E-5 0.0016041163637657324 0.0 0.11868872857842891 1.0588226823536188E-5 84-85 1.0588226823536188E-5 0.0016199987040010368 0.0 0.11890049311489963 1.0588226823536188E-5 86-87 1.0588226823536188E-5 0.0016199987040010368 0.0 0.11896931658925261 1.0588226823536188E-5 88 1.0588226823536188E-5 0.001683528064942254 0.0 0.11897990481607615 1.0588226823536188E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13790 0.0 50.55786 1 GTATCAA 25420 0.0 37.77293 1 TCAACGC 32620 0.0 29.906736 4 ATCAACG 32875 0.0 29.609823 3 TATCAAC 33525 0.0 29.290432 2 CAACGCA 33360 0.0 29.179346 5 AACGCAG 34440 0.0 28.300755 6 TGGTATC 6220 0.0 25.534027 2 GTGGTAT 6515 0.0 24.9021 1 ACGCAGA 39615 0.0 24.571432 7 CGCAGAG 40795 0.0 23.860699 8 CTTATAC 6130 0.0 23.262306 1 GCAGAGT 46090 0.0 21.202856 9 GTACATG 35740 0.0 21.191702 1 TACATGG 36540 0.0 21.089943 2 ACATGGG 35890 0.0 20.841425 3 GAGTACT 25650 0.0 19.698635 12-13 TATACAC 9380 0.0 19.617388 3 CATGGGG 25005 0.0 18.918194 4 AGAGTAC 42550 0.0 18.597233 10-11 >>END_MODULE