##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138730_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6154681 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.12952954019875 33.0 31.0 34.0 30.0 34.0 2 32.4181740694603 34.0 31.0 34.0 31.0 34.0 3 32.19964901511549 33.0 31.0 34.0 30.0 34.0 4 36.040744759964 37.0 35.0 37.0 35.0 37.0 5 35.87301990143762 37.0 35.0 37.0 35.0 37.0 6 35.9770181427762 37.0 35.0 37.0 35.0 37.0 7 35.94253073392431 37.0 35.0 37.0 35.0 37.0 8 35.91919613705406 37.0 35.0 37.0 35.0 37.0 9 37.7012426801649 39.0 37.0 39.0 35.0 39.0 10-11 37.62049966521417 39.0 37.0 39.0 35.0 39.0 12-13 37.59085986747323 39.0 37.0 39.0 35.0 39.0 14-15 38.89205338180809 40.0 38.0 41.0 35.0 41.0 16-17 38.871378792824515 40.0 38.0 41.0 35.0 41.0 18-19 38.84348920764537 40.0 38.0 41.0 35.0 41.0 20-21 38.83882680837836 40.0 38.0 41.0 35.0 41.0 22-23 38.74562118162292 40.0 38.0 41.0 34.0 41.0 24-25 38.67174881700355 40.0 38.0 41.0 34.0 41.0 26-27 38.511153090335924 40.0 38.0 41.0 34.0 41.0 28-29 38.385583270782746 40.0 38.0 41.0 34.0 41.0 30-31 38.23334671035593 40.0 38.0 41.0 34.0 41.0 32-33 38.06232132953796 40.0 37.5 41.0 33.0 41.0 34-35 38.150803591170785 40.0 38.0 41.0 33.0 41.0 36-37 38.14245135866027 40.0 38.0 41.0 33.0 41.0 38-39 38.06107610539535 40.0 37.0 41.0 33.0 41.0 40-41 38.04580357944463 40.0 37.0 41.0 33.0 41.0 42-43 38.11725383807507 40.0 37.0 41.0 33.0 41.0 44-45 38.06880875331679 40.0 37.0 41.0 33.0 41.0 46-47 37.96981742025367 40.0 37.0 41.0 33.0 41.0 48-49 37.85962872309942 40.0 37.0 41.0 33.0 41.0 50-51 37.72923345615645 40.0 37.0 41.0 33.0 41.0 52-53 37.56189982566404 39.5 36.0 41.0 32.0 41.0 54-55 37.37113428219935 39.0 36.0 41.0 32.0 41.0 56-57 37.236684789344764 39.0 35.5 41.0 32.0 41.0 58-59 37.002847529154096 39.0 35.0 40.5 31.0 41.0 60-61 36.76720259945957 38.0 35.0 40.0 31.0 41.0 62-63 36.475926406784666 38.0 35.0 40.0 31.0 41.0 64-65 36.14907503187716 37.0 35.0 40.0 30.5 41.0 66-67 35.84040457119404 37.0 34.0 39.5 30.0 41.0 68-69 35.545092971578555 36.0 34.0 39.0 30.0 41.0 70-71 35.23363103251744 36.0 34.0 39.0 30.0 40.5 72-73 34.77786479486008 35.0 34.0 38.5 29.0 40.0 74-75 34.54942514882221 35.0 34.0 37.0 29.0 39.5 76-77 33.36412636020455 34.5 32.0 36.0 28.0 39.0 78-79 34.10049423338509 35.0 33.5 36.0 29.0 39.0 80-81 34.045715971294726 35.0 34.0 36.0 29.0 38.5 82-83 33.84019457211026 35.0 33.0 36.0 29.0 37.0 84-85 33.64995958794884 35.0 33.0 35.0 29.0 37.0 86-87 33.48906857848831 35.0 33.0 35.0 29.0 36.5 88-89 33.33815286088617 35.0 33.0 35.0 29.0 36.0 90-91 33.20569290344099 35.0 33.0 35.0 29.0 36.0 92-93 33.13887245215159 35.0 33.0 35.0 29.0 36.0 94-95 33.11255425092633 35.0 33.0 35.0 29.0 35.0 96-97 33.17688368518891 35.0 33.0 35.0 29.0 35.0 98-99 33.28227240209296 35.0 33.0 35.0 29.5 35.0 100 32.064022951148694 34.0 31.0 35.0 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 2.0 19 9.0 20 56.0 21 221.0 22 923.0 23 3225.0 24 8379.0 25 17765.0 26 31564.0 27 50737.0 28 72079.0 29 96478.0 30 123326.0 31 153399.0 32 191573.0 33 243864.0 34 330671.0 35 468823.0 36 753425.0 37 1293350.0 38 1460018.0 39 819588.0 40 35205.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.8335440943243 19.48984845843351 13.198913152444455 24.477694294797733 2 15.876744871098925 20.68113684527273 39.647026385283006 23.79509189834534 3 18.932955257957317 25.25796219170417 29.820278256501027 25.988804293837486 4 13.247494061836838 17.176373560221887 36.92704788436639 32.64908449357489 5 13.79871678158462 37.39914383864899 34.86354532428245 13.938594055483946 6 31.628446705848766 36.27578748598018 17.942830830712428 14.15293497745862 7 28.071706722086816 31.743871047094075 21.866819742566673 18.317602488252437 8 25.867189542398705 35.46347893578887 20.48705692463996 18.18227459717246 9 26.257234127975117 16.02781687629302 20.367391908695186 37.347557087036684 10-11 25.39603596027154 25.90710225274064 27.863353112858324 20.833508674129497 12-13 25.91404006154015 23.34734326604417 28.068798366641584 22.669818305774093 14-15 23.025198219046608 24.686827798223824 25.57100034916513 26.71697363356444 16-17 22.86384135912162 27.84241782799141 26.16781438388115 23.125926429005826 18-19 22.876539011526347 26.979554261220034 27.782512204937998 22.361394522315617 20-21 23.687728703141524 26.15621754465843 27.61245111920378 22.54360263299627 22-23 23.419385170062302 26.237966477501807 27.437828865633257 22.904819486802637 24-25 23.09397550019952 26.376880497440386 27.66179937730554 22.867344625054553 26-27 23.118567221267263 26.474036333358814 27.665937028899833 22.741459416474093 28-29 23.02183489554965 26.37093402819061 27.729422978906804 22.877808097352936 30-31 23.362171059660035 26.429652220021598 27.376392676733285 22.83178404358508 32-33 23.035832152985225 26.503711397380247 27.489852660972797 22.970603788661737 34-35 23.04386106804173 26.60630706692916 27.648462784767514 22.7013690802616 36-37 23.220425491638125 26.488900957367356 27.37583484099683 22.91483870999769 38-39 22.870134705595536 26.55752144243212 27.617795777945155 22.954548074027194 40-41 23.247039891408182 26.437996401933876 27.41877619335002 22.896187513307925 42-43 23.15849637927927 26.402035065195488 27.29539552340587 23.14407303211937 44-45 23.055288916304498 26.70231808782341 27.125885223365504 23.116507772506587 46-47 23.35766640627305 26.43968444250713 26.826247711633872 23.376401439585955 48-49 23.191853640705812 26.583560980332592 26.747246738109798 23.477338640851794 50-51 23.052279969589623 26.748129456189822 26.870175362920545 23.32941521130001 52-53 23.322597560141904 26.646702395203487 26.833475394146028 23.197224650508584 54-55 23.257416446458297 26.52403707687407 26.729001725025604 23.48954475164203 56-57 23.364260439936732 26.81850222111445 26.510681615415255 23.306555723533563 58-59 23.142282814255484 26.996474587335562 26.750013033297996 23.111229565110957 60-61 23.348833806875575 27.091888898314835 26.503952228182698 23.055325066626885 62-63 23.22026424491822 27.28758136628877 26.383075248972617 23.10907913982039 64-65 23.202811197553782 27.16537711205899 26.45867087700735 23.173140813379877 66-67 23.34709325864887 27.058546995441073 26.308442429931617 23.285917315978438 68-69 23.28139430549736 26.887876788138716 26.507769036313146 23.322959870050784 70-71 23.285069028078144 26.56294159736648 26.599418634973386 23.552570739581988 72-73 23.407819645775803 26.620934050138207 26.493380375265275 23.47786592882072 74-75 23.149725418329634 26.826248552977816 26.566107946635498 23.457918082057052 76-77 23.354688065559344 26.660001019418196 26.49649623385195 23.48881468117051 78-79 23.24996783645928 26.683877298192744 26.455104225694537 23.61105063965344 80-81 23.34407730962882 26.699647573781654 26.42993781633199 23.526337300257538 82-83 23.36838565656186 26.56387194406103 26.6272393252089 23.440503074168216 84-85 23.493617610575843 26.617153494227132 26.47016007233714 23.41906882285989 86-87 23.23348024992087 26.64292344023711 26.624692490707908 23.498903819134107 88-89 23.351385490340874 26.53777031683433 26.60783193346062 23.50301225936418 90-91 23.37331227351535 26.531248372781924 26.645322386856513 23.450116966846217 92-93 23.43056403120636 26.53645114820757 26.608140700464 23.424844120122067 94-95 23.24539261971276 26.50377261673638 26.756676756079216 23.49415800747164 96-97 23.225302565590418 26.641586707837696 26.8311305798483 23.30198014672359 98-99 24.47127552600058 28.671065686235504 26.920228516274275 19.937430271489646 100 31.90963749194195 40.192757272275635 27.897605235782418 0.0 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1249.0 1 1143.0 2 1605.5 3 2318.0 4 3108.5 5 5057.0 6 6805.5 7 8175.0 8 9074.5 9 8885.5 10 7984.0 11 6945.0 12 7304.5 13 9535.0 14 14936.5 15 22184.0 16 27914.5 17 31313.0 18 32218.0 19 30762.0 20 28125.0 21 25489.0 22 24061.5 23 25271.5 24 29255.0 25 35983.5 26 45461.0 27 55341.0 28 64706.0 29 76063.0 30 86752.5 31 95897.5 32 107762.5 33 121828.0 34 134358.5 35 147402.5 36 162760.0 37 174887.0 38 183487.5 39 190737.0 40 198953.0 41 207505.0 42 214335.5 43 224029.5 44 236618.5 45 249915.5 46 260809.5 47 268662.0 48 274101.5 49 277931.5 50 281389.5 51 282225.0 52 278870.0 53 272686.5 54 265507.5 55 256201.0 56 243385.0 57 225428.5 58 205248.5 59 183007.0 60 158769.5 61 134172.0 62 110637.5 63 88402.5 64 68124.5 65 53447.5 66 41485.5 67 30698.5 68 22594.5 69 16592.5 70 11677.0 71 7831.5 72 5238.5 73 3489.5 74 2312.5 75 1574.5 76 1054.5 77 640.5 78 384.0 79 258.5 80 185.5 81 120.0 82 82.5 83 53.5 84 34.0 85 25.0 86 21.5 87 18.0 88 11.5 89 5.5 90 3.5 91 3.0 92 2.0 93 1.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.005353841824277325 22-23 0.004680014566545338 24-25 0.0034294968586783985 26-27 0.01634099842687403 28-29 0.02046294920648507 30-31 0.038485684116254644 32-33 0.023722702225197647 34-35 0.012467195537648013 36-37 0.007172728739312262 38-39 0.002981564659990133 40-41 0.007578032852375785 42-43 0.0096373811670391 44-45 0.006207845577121559 46-47 0.0020485551339286695 48-49 0.009849460316125084 50-51 0.004690742576899872 52-53 1.8181841322343502E-5 54-55 5.519168393783099E-4 56-57 7.081426434089018E-4 58-59 4.627743815280111E-4 60-61 0.0011298244942120432 62-63 0.001116206404617639 64-65 0.0 66-67 1.198743357338502E-4 68-69 7.103439576773011E-4 70-71 3.092138300214471E-4 72-73 5.438021664450847E-4 74-75 4.135089339665463E-4 76-77 0.0 78-79 1.091214154706232E-5 80-81 3.7688944934567004E-4 82-83 0.0019706900951314047 84-85 3.430683945725665E-5 86-87 6.390668044417234E-4 88-89 2.4827713403063737E-4 90-91 0.008509023783565146 92-93 7.995510705250787E-4 94-95 5.031914287378411E-5 96-97 2.9790187707972747E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 137.0 20-21 509.0 22-23 1077.0 24-25 2080.0 26-27 3811.0 28-29 8853.0 30-31 19982.0 32-33 26271.0 34-35 35720.0 36-37 53864.0 38-39 61833.0 40-41 61776.0 42-43 68280.0 44-45 79137.0 46-47 77855.0 48-49 72793.0 50-51 65070.0 52-53 63374.0 54-55 68163.0 56-57 71850.0 58-59 71817.0 60-61 71805.0 62-63 70030.0 64-65 73624.0 66-67 77943.0 68-69 77421.0 70-71 71921.0 72-73 65722.0 74-75 65866.0 76-77 66388.0 78-79 71316.0 80-81 71259.0 82-83 67903.0 84-85 68255.0 86-87 72687.0 88-89 78672.0 90-91 83598.0 92-93 87605.0 94-95 100870.0 96-97 224309.0 98-99 1251744.0 100-101 2421491.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.39891591765509 #Duplication Level Percentage of deduplicated Percentage of total 1 90.43894114579275 77.23387530591312 2 6.561629863819881 11.207121540462573 3 1.6633126911037421 4.2613530195701115 4 0.6169533294021425 2.1074858201092375 5 0.2740986959284922 1.1703865743368105 6 0.14382671305047218 0.7369587224705987 7 0.0849736742671797 0.5079661764769963 8 0.05516477144096118 0.3768809342322644 9 0.034226946303684155 0.26306496985557765 >10 0.12187879021546116 1.6793068892281535 >50 0.003501770402602448 0.20531406577583822 >100 0.001428295639374397 0.19816413802928512 >500 3.165631662218224E-5 0.022519447961931796 >1k 3.165631661931081E-5 0.02960239557752535 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 9.74867747004272E-5 0.0 0.0 1.6247795783404534E-5 5 0.0 1.2998236626723627E-4 0.0 1.6247795783404534E-5 1.6247795783404534E-5 6 0.0 1.2998236626723627E-4 0.0 1.6247795783404534E-5 6.499118313361814E-5 7 0.0 1.462301620506408E-4 0.0 1.6247795783404534E-5 1.1373457048383174E-4 8 0.0 2.5996473253447254E-4 0.0 1.6247795783404534E-5 1.2998236626723627E-4 9 0.0 6.336640355527768E-4 0.0 1.6247795783404534E-5 1.2998236626723627E-4 10-11 8.123897891702267E-6 6.336640355527768E-4 0.0 1.6247795783404534E-5 1.462301620506408E-4 12-13 1.6247795783404534E-5 6.336640355527768E-4 0.0 1.6247795783404534E-5 1.462301620506408E-4 14-15 1.6247795783404534E-5 8.20513687061929E-4 0.0 1.6247795783404534E-5 1.7060185572574763E-4 16-17 1.6247795783404534E-5 8.286375849536312E-4 0.0 1.6247795783404534E-5 1.949735494008544E-4 18-19 1.6247795783404534E-5 8.53009278628738E-4 0.0 1.6247795783404534E-5 2.3559303885936574E-4 20-21 1.6247795783404534E-5 9.017526659789517E-4 0.0 3.249559156680907E-5 2.518408346427703E-4 22-23 1.6247795783404534E-5 9.911155427876767E-4 0.0 7.311508102532041E-5 3.3307981355979295E-4 24-25 1.6247795783404534E-5 0.0011373457048383174 0.0 1.1373457048383174E-4 4.0619489458511336E-4 26-27 1.6247795783404534E-5 0.0011860890921885309 0.0 2.193452430759612E-4 4.0619489458511336E-4 28-29 1.6247795783404534E-5 0.0011860890921885309 0.0 7.230269123615018E-4 4.0619489458511336E-4 30-31 1.6247795783404534E-5 0.0014135582331561945 0.0 0.00218532853286791 4.143187924768156E-4 32-33 1.6247795783404534E-5 0.001429806028939599 0.0 0.0047281085729707194 4.87433873502136E-4 34-35 1.6247795783404534E-5 0.001673522965690667 0.0 0.008318871441103121 5.524250566357542E-4 36-37 1.6247795783404534E-5 0.0019172399024417349 0.0 0.014070591148428326 5.524250566357542E-4 38-39 3.249559156680907E-5 0.0019822310855753533 0.0 0.023104365604001247 5.849206482025633E-4 40-41 3.249559156680907E-5 0.0022097002265430168 0.0 0.031634458390288625 6.011684439859678E-4 42-43 3.249559156680907E-5 0.0022909392054600393 0.0 0.03967711730307387 6.011684439859678E-4 44-45 3.249559156680907E-5 0.0025996473253447256 0.0 0.04948266205835851 6.011684439859678E-4 46-47 3.249559156680907E-5 0.0028108686705289846 0.0 0.059726897299795065 6.255401376610745E-4 48-49 3.249559156680907E-5 0.0028108686705289846 0.0 0.06935371630146225 6.336640355527768E-4 50-51 3.249559156680907E-5 0.0030545856072800525 0.0 0.07876119006005347 6.336640355527768E-4 52-53 3.249559156680907E-5 0.0030870811988468615 0.0 0.0885342392237713 7.230269123615018E-4 54-55 3.249559156680907E-5 0.0031439484840887775 0.0 0.09815293432754679 8.123897891702267E-4 56-57 3.249559156680907E-5 0.003200815769330693 0.0 0.10764164706505504 8.123897891702267E-4 58-59 3.249559156680907E-5 0.003217063565114098 0.0 0.11669979321430307 8.123897891702267E-4 60-61 3.249559156680907E-5 0.003347045931381334 0.0 0.1257660632614428 8.123897891702267E-4 62-63 3.249559156680907E-5 0.003412037114514952 0.0 0.13447488180134765 8.286375849536312E-4 64-65 3.249559156680907E-5 0.0037857364175332563 0.0 0.1422494520837067 8.286375849536312E-4 66-67 3.249559156680907E-5 0.0037938603154249583 0.0 0.1508851555425862 8.367614828453335E-4 68-69 4.061948945851133E-5 0.0038832231922336833 0.0 0.15930963765628145 8.448853807370357E-4 70-71 4.87433873502136E-5 0.003972586069042409 0.0 0.1660118534169358 8.448853807370357E-4 72-73 4.87433873502136E-5 0.004005081660609217 0.0 0.17128426314865058 8.773809723038448E-4 74-75 4.87433873502136E-5 0.004094444537417943 0.0 0.17537870768606853 8.936287680872493E-4 76-77 4.87433873502136E-5 0.004216303005793476 0.0 0.17970874526234587 8.936287680872493E-4 78-79 5.686728524191587E-5 0.004240674699468584 0.0 0.18260897680968358 9.09876563870654E-4 80-81 6.499118313361814E-5 0.0042569224952519885 0.0 0.1833969949051787 9.180004617623562E-4 82-83 6.499118313361814E-5 0.004273170291035393 0.0 0.18403065894073145 9.74867747004272E-4 84-85 6.499118313361814E-5 0.004297541984710499 0.0 0.18430687146904934 9.74867747004272E-4 86-87 6.499118313361814E-5 0.0043544092699524155 0.0 0.18442060603953317 9.911155427876767E-4 88 6.499118313361814E-5 0.0044843916362196515 0.0 0.18442872993742487 0.0010073633385710812 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7825 0.0 48.453648 1 GTATCAA 13510 0.0 33.150677 1 CTTATAC 4905 0.0 28.677958 1 TCAACGC 16220 0.0 27.21321 4 ATCAACG 16730 0.0 26.359478 3 CAACGCA 16955 0.0 26.009676 5 TATCAAC 17030 0.0 25.918865 2 AACGCAG 17320 0.0 25.531567 6 TATACAC 6515 0.0 24.817245 3 GTACATG 22400 0.0 23.494757 1 TACATGG 22695 0.0 22.708477 2 ACATGGG 23090 0.0 21.82984 3 GTGGTAT 4015 0.0 21.443815 1 ACGCAGA 20700 0.0 21.440752 7 CGCAGAG 21305 0.0 20.774979 8 TTATACA 7470 0.0 20.345823 2 TGGTATC 4130 0.0 19.672249 2 CATGGGG 17280 0.0 19.415222 4 TACACAT 8315 0.0 18.812943 5 ACACATC 7695 0.0 18.227573 6 >>END_MODULE