##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138726_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 12136625 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.14615743668442 33.0 31.0 34.0 31.0 34.0 2 32.43075039395219 34.0 31.0 34.0 31.0 34.0 3 32.2100134922188 33.0 31.0 34.0 30.0 34.0 4 36.049778171443876 37.0 35.0 37.0 35.0 37.0 5 35.88699148239317 37.0 35.0 37.0 35.0 37.0 6 35.988444645855004 37.0 35.0 37.0 35.0 37.0 7 35.94972416137106 37.0 35.0 37.0 35.0 37.0 8 35.92630471815682 37.0 35.0 37.0 35.0 37.0 9 37.71128629252366 39.0 37.0 39.0 35.0 39.0 10-11 37.62932569804208 39.0 37.0 39.0 35.0 39.0 12-13 37.599752855509664 39.0 37.0 39.0 35.0 39.0 14-15 38.906394858537695 40.0 38.0 41.0 35.0 41.0 16-17 38.88273432688247 40.0 38.0 41.0 35.0 41.0 18-19 38.85489475039395 40.0 38.0 41.0 35.0 41.0 20-21 38.84736912899838 40.0 38.0 41.0 35.0 41.0 22-23 38.758416902826156 40.0 38.0 41.0 34.5 41.0 24-25 38.689506024622894 40.0 38.0 41.0 34.0 41.0 26-27 38.53650115525657 40.0 38.0 41.0 34.0 41.0 28-29 38.40740044689176 40.0 38.0 41.0 34.0 41.0 30-31 38.25326147310865 40.0 38.0 41.0 34.0 41.0 32-33 38.08028528645623 40.0 37.5 41.0 33.0 41.0 34-35 38.1684662295543 40.0 38.0 41.0 33.0 41.0 36-37 38.15851235291762 40.0 38.0 41.0 33.0 41.0 38-39 38.08672384293249 40.0 37.0 41.0 33.0 41.0 40-41 38.04780127834377 40.0 37.0 41.0 33.0 41.0 42-43 38.11018751069936 40.0 37.0 41.0 33.0 41.0 44-45 38.055788575583996 40.0 37.0 41.0 33.0 41.0 46-47 37.94799928025013 40.0 37.0 41.0 33.0 41.0 48-49 37.82886453390611 40.0 37.0 41.0 33.0 41.0 50-51 37.694649522951515 40.0 36.5 41.0 33.0 41.0 52-53 37.510455060957 39.5 36.0 41.0 32.0 41.0 54-55 37.31740901405789 39.0 36.0 41.0 32.0 41.0 56-57 37.18466543575158 39.0 35.0 41.0 32.0 41.0 58-59 36.9377486624803 39.0 35.0 40.5 31.0 41.0 60-61 36.70183724242797 38.0 35.0 40.0 31.0 41.0 62-63 36.40434964735683 37.5 35.0 40.0 31.0 41.0 64-65 36.06466762621354 37.0 35.0 40.0 30.5 41.0 66-67 35.752632258329854 36.5 34.0 39.5 30.0 41.0 68-69 35.45474208763471 36.0 34.0 39.0 30.0 41.0 70-71 35.14717233326438 35.5 34.0 39.0 30.0 40.0 72-73 34.69599957220753 35.0 34.0 38.0 29.0 40.0 74-75 34.4744454803217 35.0 34.0 37.0 29.0 39.5 76-77 33.301535053654774 34.5 32.0 36.0 28.0 39.0 78-79 34.03132801309827 35.0 33.0 36.0 29.0 39.0 80-81 33.987850794461025 35.0 34.0 36.0 29.0 37.5 82-83 33.79139222169346 35.0 33.0 35.5 29.0 37.0 84-85 33.61140292844793 35.0 33.0 35.0 29.0 37.0 86-87 33.46450487263806 35.0 33.0 35.0 29.0 36.0 88-89 33.32469560478409 35.0 33.0 35.0 29.0 36.0 90-91 33.20409205455867 35.0 33.0 35.0 29.0 36.0 92-93 33.14297313509313 35.0 33.0 35.0 29.0 35.5 94-95 33.12066583745558 35.0 33.0 35.0 29.0 35.0 96-97 33.187295878465235 35.0 33.0 35.0 29.0 35.0 98-99 33.291732548739255 35.0 33.0 35.0 29.5 35.0 100 32.09343509135729 34.0 31.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 1.0 18 3.0 19 14.0 20 77.0 21 384.0 22 1846.0 23 6490.0 24 16698.0 25 35551.0 26 63890.0 27 101053.0 28 144572.0 29 191543.0 30 244058.0 31 302762.0 32 376685.0 33 482207.0 34 655184.0 35 939858.0 36 1525390.0 37 2586938.0 38 2824559.0 39 1566910.0 40 69951.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.59081705169271 19.150950119988053 13.196617675836569 24.06161515248267 2 16.364574171155493 20.645162885068956 39.127516916770524 23.862746027005034 3 19.20547928274953 24.97304646060993 29.45139196440526 26.37008229223528 4 13.517744842573615 16.798162586386248 36.62462999392335 33.05946257711678 5 14.248433975672809 37.16813364506195 34.36892051950192 14.21451185976332 6 32.37707352744276 35.70944970286221 17.73668544591268 14.176791323782354 7 28.662482362271223 31.598265580422897 21.657050456778553 18.082201600527327 8 26.339390069314987 35.13109286972284 20.036278619467932 18.493238441494235 9 26.69798234682212 15.746890095063495 20.2731978618438 37.28192969627059 10-11 25.808373415179258 25.73156046264921 27.474656257402696 20.98540986476883 12-13 26.3227956701307 23.312201703521364 27.697980286941387 22.667022339406547 14-15 23.451684467469335 24.46369975178437 25.35178025192341 26.73283552882288 16-17 23.25132810810254 27.55266394075783 25.94453153162432 23.25147641951531 18-19 23.221641106979906 26.70211446757233 27.614266733956107 22.461977691491665 20-21 24.194856659437082 25.800271293697985 27.491569916880206 22.513302129984726 22-23 23.981882385575727 25.64230522221203 27.292715185507227 23.083097206705016 24-25 23.51601283332963 25.882901369093737 27.453396300124705 23.147689497451925 26-27 23.522817449068057 25.992085099101196 27.393659626274008 23.09143782555674 28-29 23.520855976031946 25.968271092092905 27.416787502241487 23.09408542963366 30-31 23.7440298240808 25.87834290149557 27.14332872129386 23.23429855312977 32-33 23.445537175363018 26.117539405087815 27.170012325635245 23.266911093913922 34-35 23.652323090183625 26.14204372265303 27.170807617118122 23.034825570045232 36-37 23.71116913363019 25.971535416927193 27.03695484266193 23.280340606780683 38-39 23.395661489126343 26.330712974312647 27.153906382468772 23.119719154092234 40-41 23.75768384270308 26.060659007449814 27.037360031204237 23.144297118642864 42-43 23.456896890057934 26.168862532900434 26.856686132147633 23.517554444894 44-45 23.464230467504954 26.262964190380234 26.76538111415522 23.507424227959593 46-47 23.78235897842859 26.144682642787632 26.591307488545425 23.48165089023836 48-49 23.60585749096062 26.41051164928546 26.32080113152832 23.6628297282256 50-51 23.624988829044423 26.416635048754433 26.394867871050533 23.563508251150616 52-53 23.896079778520825 26.405137855239662 26.156172259988647 23.542610106250866 54-55 23.82719689024592 26.179420556988305 26.3288057106339 23.664576842131872 56-57 23.80948504919066 26.38967573672129 26.18320571538454 23.617633498703512 58-59 23.6642807604042 26.455993164460534 26.251151934048178 23.628574141087093 60-61 23.786567983025154 26.407845774306065 26.32681409514826 23.478772147520523 62-63 23.942110904131358 26.42268602370518 26.15123527028845 23.483967801875018 64-65 23.77994770099809 26.46878210014426 26.183414493071776 23.567855705785874 66-67 23.97781160291958 26.379980035878454 26.00313793547154 23.63907042573043 68-69 23.748217689067342 26.333051621419866 26.229967435323214 23.688763254189574 70-71 23.759296829153474 26.15295642584914 26.250270524734148 23.837476220263238 72-73 23.904773829420872 26.223352096532572 26.035580576177647 23.83629349786891 74-75 23.62515291694948 26.37557898417004 26.200744778336322 23.798523320544156 76-77 23.862767223310527 26.246377050091922 26.082625683704574 23.808230042892973 78-79 23.627909549995714 26.246905569876013 26.141788245061186 23.983396635067088 80-81 23.917471750531085 26.255660949404707 26.015490727187263 23.81137657287694 82-83 23.840801673579495 26.176417542863405 26.28490592419852 23.697874859358574 84-85 23.880938150829607 26.20165303540113 26.10135822650338 23.816050587265885 86-87 23.638568328871585 26.335865451658652 26.229518572351644 23.79604764711812 88-89 23.808690938994772 26.091724917395194 26.218575233785575 23.88100890982446 90-91 23.733189263888104 26.109287463760616 26.254982567223827 23.902540705127453 92-93 23.83701699546853 26.152299401374187 26.27299524244837 23.737688360708916 94-95 23.74972245157153 26.188122403332276 26.304480754391545 23.757674390704647 96-97 23.614174784381795 26.278144592564512 26.42988974913437 23.677790873919324 98-99 24.955728329300094 28.286576385339256 26.461064771934527 20.29663051342612 100 32.58691773680633 39.9271279109794 27.48595435221427 0.0 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 3366.0 1 2880.0 2 3437.0 3 4778.0 4 6206.5 5 9707.0 6 12911.5 7 15775.0 8 18381.0 9 18771.5 10 16758.0 11 14248.5 12 14860.0 13 19316.0 14 30265.0 15 45132.5 16 56885.5 17 63229.0 18 64144.5 19 60520.0 20 54402.5 21 48123.0 22 44284.5 23 45154.5 24 50889.0 25 61833.5 26 78023.5 27 95774.0 28 113342.0 29 134798.0 30 155606.0 31 173684.0 32 195043.5 33 218501.5 34 239658.0 35 262255.0 36 290423.5 37 315065.0 38 334352.0 39 350066.0 40 365931.0 41 383124.5 42 399192.0 43 418698.5 44 441452.5 45 465152.5 46 488605.5 47 511446.0 48 534101.5 49 551617.5 50 557610.5 51 561958.5 52 559732.5 53 549850.5 54 539394.0 55 522439.5 56 498067.0 57 465396.0 58 428646.5 59 385533.5 60 338130.5 61 291830.5 62 245483.0 63 200402.5 64 162020.5 65 134063.0 66 109651.0 67 80216.5 68 56120.5 69 42588.5 70 29398.0 71 18936.5 72 12961.5 73 8692.0 74 5872.0 75 4021.0 76 2693.5 77 1733.5 78 1132.0 79 734.0 80 468.0 81 300.5 82 221.0 83 152.5 84 100.0 85 66.5 86 45.5 87 32.5 88 19.0 89 11.5 90 8.5 91 5.5 92 3.5 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.005079855074577464 22-23 0.004919663623562173 24-25 0.0037255442643082436 26-27 0.016808349606415817 28-29 0.021715765835798276 30-31 0.03964070613123781 32-33 0.024019862281698605 34-35 0.012374337457348637 36-37 0.0072334204656486125 38-39 0.0027970063146331666 40-41 0.007850877266086062 42-43 0.00954092150882464 44-45 0.006103378562994687 46-47 0.001997181892211606 48-49 0.0094099676551994 50-51 0.0043932239858217445 52-53 9.188786372662258E-6 54-55 4.972354868695211E-4 56-57 7.104516948366253E-4 58-59 4.5276474596394787E-4 60-61 0.0010185577357625661 62-63 8.993371884920814E-4 64-65 0.0 66-67 2.1562729213692012E-4 68-69 6.610524667172796E-4 70-71 2.3215417926533005E-4 72-73 6.801942655751537E-4 74-75 3.3943125111707354E-4 76-77 0.0 78-79 5.456105007760491E-6 80-81 4.100815330754031E-4 82-83 0.0021671313052474242 84-85 1.714636283921364E-5 86-87 6.619417958062851E-4 88-89 2.776227389326138E-4 90-91 0.00880788338675458 92-93 8.047962910072123E-4 94-95 6.909263035392511E-5 96-97 2.9736118452664266E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 272.0 20-21 976.0 22-23 2046.0 24-25 4041.0 26-27 7734.0 28-29 17606.0 30-31 38110.0 32-33 49998.0 34-35 68140.0 36-37 102168.0 38-39 116842.0 40-41 116367.0 42-43 130432.0 44-45 152149.0 46-47 151446.0 48-49 140806.0 50-51 124861.0 52-53 121023.0 54-55 130084.0 56-57 136960.0 58-59 133989.0 60-61 129966.0 62-63 124899.0 64-65 130622.0 66-67 137209.0 68-69 140875.0 70-71 138983.0 72-73 128418.0 74-75 130088.0 76-77 130558.0 78-79 141001.0 80-81 141477.0 82-83 134708.0 84-85 135292.0 86-87 143918.0 88-89 155712.0 90-91 165807.0 92-93 173210.0 94-95 199990.0 96-97 448221.0 98-99 2531435.0 100-101 4828186.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.52267849369377 #Duplication Level Percentage of deduplicated Percentage of total 1 89.46910061931268 74.72698926146792 2 7.196347645084414 12.021164613784716 3 1.7582611463376185 4.405640413005312 4 0.6788533258168337 2.267985923062966 5 0.321116461083707 1.3410253469063595 6 0.18526409768677493 0.9284252200510068 7 0.10411816248496521 0.6087359467410143 8 0.06221954652676461 0.4157394544462706 9 0.04648377815402594 0.34942046921378056 >10 0.169889768803459 2.2199116136428003 >50 0.005931924763296536 0.3386770890814299 >100 0.002355528664136335 0.3446545585886454 >500 5.79952814877652E-5 0.03163009000769871 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.6479045863244517E-5 2 0.0 9.063475224784485E-5 0.0 0.0 3.295809172648903E-5 3 0.0 9.063475224784485E-5 0.0 0.0 3.295809172648903E-5 4 0.0 2.2246711915380099E-4 0.0 0.0 4.119761465811129E-5 5 0.0 2.3070664208542325E-4 0.0 0.0 4.119761465811129E-5 6 1.6479045863244517E-5 2.3070664208542325E-4 0.0 0.0 5.767666052135581E-5 7 1.6479045863244517E-5 2.471856879486678E-4 0.0 8.239522931622258E-6 5.767666052135581E-5 8 1.6479045863244517E-5 2.8838330260677906E-4 0.0 8.239522931622258E-6 6.591618345297807E-5 9 2.4718568794866776E-5 5.932456510768027E-4 0.0 1.6479045863244517E-5 9.063475224784485E-5 10-11 4.119761465811129E-5 5.932456510768027E-4 0.0 2.0598807329055647E-5 9.063475224784485E-5 12-13 4.119761465811129E-5 6.097246969400472E-4 0.0 2.4718568794866776E-5 9.063475224784485E-5 14-15 4.943713758973355E-5 8.28072054628037E-4 0.0 2.4718568794866776E-5 1.6067069716663407E-4 16-17 4.943713758973355E-5 8.527906234229038E-4 0.0 2.4718568794866776E-5 2.0598807329055648E-4 18-19 5.355689905554468E-5 8.898684766152039E-4 0.0 4.943713758973355E-5 2.3070664208542325E-4 20-21 7.415570638460033E-5 9.475451371365599E-4 0.0 8.651499078203372E-5 2.3070664208542325E-4 22-23 9.063475224784485E-5 0.00102170084352116 0.0 1.3595212837176727E-4 2.677844952777234E-4 24-25 1.235928439743339E-4 0.0011411739260296827 0.0 1.5655093570082293E-4 3.2546115579907924E-4 26-27 1.4831141276920067E-4 0.0012029703480168498 0.0 2.3894616501704552E-4 3.2958091726489034E-4 28-29 1.4831141276920067E-4 0.001215329632414283 0.0 7.703953941066812E-4 3.2958091726489034E-4 30-31 1.4831141276920067E-4 0.0014254374671706508 0.0 0.0022287909530038213 3.2958091726489034E-4 32-33 1.524311742350118E-4 0.0014460362744997065 0.0 0.004832480199396455 3.666587704571905E-4 34-35 1.5655093570082293E-4 0.0017220602927090522 0.0 0.008396073867323082 3.954971007178684E-4 36-37 1.5655093570082293E-4 0.0019774855035893423 0.0 0.013578733791313483 4.160959080469241E-4 38-39 1.5655093570082293E-4 0.002072240017302998 0.0 0.021727621970687897 4.572935227050354E-4 40-41 1.6479045863244517E-4 0.002323545466717477 0.0 0.030300845581040858 4.7377256856827993E-4 42-43 1.6479045863244517E-4 0.0024265395033627552 0.0 0.03821490735686404 5.149701832263912E-4 44-45 1.6479045863244517E-4 0.0028220366040806236 0.0 0.04696528071024687 5.561677978845025E-4 46-47 1.6479045863244517E-4 0.003081581576426725 0.0 0.05667967824662952 5.973654125426138E-4 48-49 1.6479045863244517E-4 0.0030857013378925357 0.0 0.0665959440948369 6.262037428032917E-4 50-51 1.689102200982563E-4 0.00346471939274716 0.0 0.07579125168652734 6.262037428032917E-4 52-53 1.7302998156406744E-4 0.0034894379615420267 0.0 0.08493300237916224 6.921199262562698E-4 54-55 1.7302998156406744E-4 0.003522396053268516 0.0 0.0940253159342074 7.580361097092479E-4 56-57 1.7302998156406744E-4 0.003592431998187305 0.0 0.10314234805804745 7.786349170383034E-4 58-59 1.7714974302987857E-4 0.0036171505669821717 0.0 0.11243241016345154 7.909942014357368E-4 60-61 1.812695044956897E-4 0.0036995457962983947 0.0 0.12162359799367617 7.992337243673592E-4 62-63 1.853892659615008E-4 0.003744863172422317 0.0 0.12983016283357193 8.404313390254704E-4 64-65 1.8950902742731195E-4 0.00423099502538803 0.0 0.13792961387535663 8.445511004912816E-4 66-67 1.9362878889312308E-4 0.00426807287858033 0.0 0.1464328015407908 8.569103848887149E-4 68-69 2.0598807329055648E-4 0.004366947153759798 0.0 0.1546146478118917 8.651499078203372E-4 70-71 2.0598807329055648E-4 0.004420504052815342 0.0 0.16156880516618088 9.22826568341693E-4 72-73 2.0598807329055648E-4 0.004436983098678586 0.0 0.1667926627048294 0.0010299403664527824 74-75 2.0598807329055648E-4 0.004502899282131564 0.0 0.17101129844581997 0.0010299403664527824 76-77 2.0598807329055648E-4 0.004692408309558876 0.0 0.17529997013172938 0.0010464194123160268 78-79 2.0598807329055648E-4 0.004762444254477666 0.0 0.17813848578167324 0.0010587786967134602 80-81 2.0598807329055648E-4 0.004766564015943477 0.0 0.1790077554509594 0.0010958565499057603 82-83 2.0598807329055648E-4 0.004795402346204155 0.0 0.17974107299187378 0.0011658924948245496 84-85 2.0598807329055648E-4 0.0048530790067255105 0.0 0.17997589939542502 0.001174132017756172 86-87 2.0598807329055648E-4 0.004914875428712677 0.0 0.18009949223939936 0.0011823715406877942 88 2.0598807329055648E-4 0.005116743740537423 0.0 0.18010773176233097 0.0011947308250852275 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 15610 0.0 52.455463 1 GTATCAA 28235 0.0 35.37949 1 TCAACGC 35140 0.0 27.94149 4 TATCAAC 36175 0.0 27.366837 2 ATCAACG 36055 0.0 27.232393 3 CAACGCA 36490 0.0 26.896612 5 AACGCAG 36940 0.0 26.612986 6 GTGGTAT 7210 0.0 23.063341 1 GTACATG 47720 0.0 22.696976 1 TGGTATC 6910 0.0 22.417187 2 ACGCAGA 43915 0.0 22.386057 7 TACATGG 48310 0.0 21.95691 2 CGCAGAG 46600 0.0 21.061317 8 ACATGGG 49520 0.0 20.993473 3 CGTCGAA 1115 0.0 19.228298 94 CATGGGG 37065 0.0 19.086199 4 GAGTACT 25480 0.0 18.645046 12-13 GCAGAGT 52820 0.0 18.458014 9 CAGAGTA 50460 0.0 17.580923 10-11 GTACTTT 28255 0.0 16.865896 14-15 >>END_MODULE