##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138725_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 14751916 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.7641523311277 31.0 31.0 34.0 30.0 34.0 2 32.03202621273061 33.0 31.0 34.0 30.0 34.0 3 31.937879662546884 31.0 31.0 34.0 30.0 34.0 4 35.79371832106419 37.0 35.0 37.0 35.0 37.0 5 35.57702145267096 37.0 35.0 37.0 33.0 37.0 6 35.66026013163307 37.0 35.0 37.0 33.0 37.0 7 35.578549864302374 37.0 35.0 37.0 33.0 37.0 8 35.56386668687647 37.0 35.0 37.0 33.0 37.0 9 37.28655003187382 39.0 37.0 39.0 34.0 39.0 10-11 37.158541236270594 39.0 37.0 39.0 33.0 39.0 12-13 37.11594348151115 39.0 37.0 39.0 33.0 39.0 14-15 38.297695024836095 40.0 38.0 41.0 33.0 41.0 16-17 38.251289222362715 40.0 38.0 41.0 33.0 41.0 18-19 38.252925382709606 40.0 38.0 41.0 33.0 41.0 20-21 38.251417022682226 40.0 38.0 41.0 33.0 41.0 22-23 38.18269097269617 40.0 37.5 41.0 33.0 41.0 24-25 38.1003129326884 40.0 37.0 41.0 33.0 41.0 26-27 37.92909734453541 40.0 37.0 41.0 33.0 41.0 28-29 37.777635659450496 40.0 37.0 41.0 32.0 41.0 30-31 37.61888008481128 40.0 37.0 41.0 32.0 41.0 32-33 37.451157552278445 39.0 36.0 41.0 32.0 41.0 34-35 37.32159455754676 39.0 36.0 41.0 31.0 41.0 36-37 37.410260195480454 39.0 36.0 41.0 31.0 41.0 38-39 37.37727479678867 39.0 36.0 41.0 31.0 41.0 40-41 37.34177678847519 39.0 36.0 41.0 31.0 41.0 42-43 37.41979264869114 39.0 36.0 41.0 31.0 41.0 44-45 37.451357859146356 40.0 36.0 41.0 31.5 41.0 46-47 37.32939835995873 39.0 36.0 41.0 31.0 41.0 48-49 37.25776255311111 39.0 36.0 41.0 31.0 41.0 50-51 37.15645356843774 39.0 36.0 41.0 31.0 41.0 52-53 36.99925580393816 39.0 35.0 41.0 31.0 41.0 54-55 36.81619484808611 39.0 35.0 40.0 31.0 41.0 56-57 36.67061083581157 38.5 35.0 40.0 30.0 41.0 58-59 36.399525242593384 38.0 35.0 40.0 30.0 41.0 60-61 36.232830462547454 38.0 34.5 40.0 30.0 41.0 62-63 35.96183681849628 37.5 34.0 40.0 29.0 41.0 64-65 35.650672747910306 37.0 34.0 40.0 29.0 41.0 66-67 35.31596864961942 36.5 34.0 39.0 29.0 41.0 68-69 35.077794860693544 36.0 34.0 39.0 29.0 41.0 70-71 34.75653433782739 35.5 33.0 39.0 28.0 40.0 72-73 34.46391975094261 35.0 33.0 38.0 28.0 40.0 74-75 34.183256267661335 35.0 33.0 37.0 28.0 39.5 76-77 32.841938457974564 34.0 31.5 36.0 26.5 39.0 78-79 33.59346741652308 35.0 32.5 36.0 28.0 39.0 80-81 33.63142039302726 35.0 33.0 36.0 29.0 38.5 82-83 33.40939344170181 35.0 33.0 36.0 28.5 37.0 84-85 33.2149706734113 35.0 33.0 35.0 28.0 37.0 86-87 33.05510881383613 35.0 32.5 35.0 28.0 36.5 88-89 32.94643562056601 35.0 32.0 35.0 28.0 36.0 90-91 32.8200064283088 34.0 32.0 35.0 28.0 36.0 92-93 32.81721249545888 34.0 32.0 35.0 28.5 35.5 94-95 32.76000926994139 34.0 32.0 35.0 29.0 35.0 96-97 32.866990521188086 34.0 32.0 35.0 29.0 35.0 98-99 32.995832293517466 34.0 32.0 35.0 29.0 35.0 100 31.92340445917454 34.0 31.0 35.0 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 1.0 18 5.0 19 21.0 20 161.0 21 807.0 22 3569.0 23 11798.0 24 30653.0 25 63815.0 26 113617.0 27 176462.0 28 249389.0 29 324830.0 30 405417.0 31 494058.0 32 601523.0 33 743322.0 34 962299.0 35 1281743.0 36 1871464.0 37 2844118.0 38 3002960.0 39 1514411.0 40 55472.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.51980166642772 19.71394900255323 13.461384504994776 24.304864826024282 2 15.898124691057081 21.103048580265778 39.358514514318 23.640312214359138 3 18.89754758931616 25.43053288144105 30.032986275049584 25.63893325419321 4 13.304197231057985 17.17916506574468 37.34468119259898 32.171956510598356 5 13.633795094820226 37.714009488665745 34.91242086790624 13.73977454860779 6 31.48799789803575 36.63666468816661 18.023001215570915 13.852336198226725 7 27.812495678527455 32.10819530154592 22.158043741572282 17.92126527835435 8 25.76772400276683 35.672871239234276 20.4970120491467 18.062392708852194 9 26.369505247284845 15.968699656959792 20.58138892475994 37.08040617099543 10-11 25.310740154388768 26.117323543508636 28.0243741905924 20.5475621115102 12-13 25.732874292397 23.66823401109388 28.311491876716214 22.2873998197929 14-15 22.855695490673888 24.961954094640994 25.940474444133223 26.24187597055189 16-17 22.577097781738996 28.03890694605365 26.56842338310495 22.815571889102408 18-19 22.550379537651207 27.294907769434147 28.198722336956656 21.955990355957994 20-21 23.51747018385257 26.416966968147747 28.05178075230436 22.01378209569532 22-23 23.15287520974009 26.298666362547635 27.910099466315845 22.63835896139643 24-25 22.78164667586223 26.461018092418087 28.072252481315136 22.685082750404547 26-27 22.787536372230164 26.61005386659096 28.00164365432994 22.60076610684893 28-29 22.771071360514348 26.694926476910002 27.96095750950388 22.57304465307177 30-31 23.058039664654967 26.588337252650447 27.777832589172263 22.575790493522323 32-33 22.813800616270356 26.819701289186565 27.724754923195604 22.64174317134748 34-35 22.92233429098414 26.770043814238598 27.775673155379415 22.531948739397844 36-37 22.954680488412713 26.672715129874597 27.746562352070942 22.62604202964175 38-39 22.723924630481136 26.902810927224408 27.83136295951157 22.541901482782887 40-41 23.044436750308922 26.753772688318488 27.59421888738839 22.607571673984204 42-43 22.850449583235548 26.85807499465158 27.431554646188427 22.85992077592444 44-45 22.926063447628266 26.962748887934616 27.293401736416374 22.81778592802074 46-47 23.041956449419025 26.84179036823892 27.087312133873525 23.028941048468525 48-49 22.907584907800214 26.99717845257461 27.051484417178496 23.04375222244668 50-51 22.883875375710154 27.127676312357345 26.956561093481074 23.031887218451427 52-53 23.121227321403392 27.041721019950476 26.76969315074914 23.067358507896994 54-55 23.116565240102645 26.80467913885901 26.928128522260213 23.150627098778127 56-57 23.0518677390638 27.01074365251198 26.880452798274085 23.056935810150133 58-59 22.98486458925735 27.147835977487105 26.854850665777658 23.01244876747789 60-61 23.10707215518948 27.01980540686062 26.917566752607847 22.95555568534206 62-63 23.176560221898583 27.10290733899346 26.761396454603997 22.959135984503956 64-65 23.036856135647994 27.10180261055653 26.83954418771456 23.021797066080918 66-67 23.18091661962634 27.084643555601957 26.650425795308447 23.08401402946326 68-69 23.049213397177446 27.089784649892344 26.768652602983316 23.09234934994689 70-71 23.039059887440622 26.767494220980133 26.883412554112756 23.310033337466493 72-73 23.139777504693683 26.87491504454943 26.746977310943503 23.238330139813385 74-75 22.881323871154315 27.09282569415557 26.785502710588975 23.240347724101138 76-77 23.07544420232419 26.931881227058675 26.76411070263424 23.228563867982896 78-79 22.9648638545796 26.972900516253333 26.750418442910984 23.31181718625608 80-81 23.100100096757302 26.926928909710217 26.68065090477066 23.29232008876182 82-83 23.088146676784362 26.868239372703062 26.863733837730063 23.179880112782513 84-85 23.193950714696104 26.87170799917548 26.72539973861241 23.208941547516 86-87 22.944537507368814 26.913077179075103 26.851465424017228 23.290919889538856 88-89 23.027253006254536 26.818615529377926 26.863234527600454 23.290896936767087 90-91 23.04771546136294 26.814075579389907 26.94626438459899 23.19194457464816 92-93 23.160183217032948 26.785226944750555 26.862336653163243 23.192253185053254 94-95 22.959769946749024 26.847463356245566 26.962142974504168 23.230623722501246 96-97 22.8753066968103 26.965314778316756 27.090374540207584 23.06900398466536 98-99 24.069498869893053 28.964153719297215 27.210961745823344 19.75538566498639 100 31.308866236268013 40.51696946188836 28.174164301843625 0.0 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 3397.0 1 3062.0 2 4219.0 3 5992.0 4 7909.5 5 12543.0 6 16775.0 7 20331.0 8 22876.5 9 22706.5 10 20340.5 11 17788.0 12 18784.0 13 24494.5 14 37839.0 15 55797.5 16 70453.5 17 78566.0 18 80051.5 19 76792.5 20 70752.0 21 64362.0 22 61181.5 23 63764.5 24 73449.0 25 90840.0 26 116131.5 27 143147.0 28 167261.5 29 195232.5 30 221458.5 31 244810.0 32 274078.0 33 306631.0 34 337492.0 35 368779.0 36 405008.0 37 435860.5 38 457239.0 39 475563.5 40 497784.5 41 520473.5 42 537956.5 43 558269.5 44 579522.0 45 595991.5 46 609879.5 47 624477.0 48 639160.5 49 649488.5 50 654268.0 51 655944.5 52 646775.5 53 629796.0 54 612357.5 55 586666.5 56 551310.0 57 510783.0 58 466564.0 59 413947.5 60 357822.5 61 301318.5 62 245924.5 63 194800.5 64 150156.0 65 117655.5 66 92069.5 67 69221.0 68 51047.5 69 37436.5 70 25998.5 71 17144.0 72 11559.0 73 7809.0 74 5140.5 75 3421.0 76 2352.0 77 1557.0 78 1032.5 79 716.0 80 479.5 81 307.0 82 238.0 83 185.0 84 130.0 85 91.0 86 63.5 87 47.0 88 33.0 89 21.5 90 16.0 91 12.5 92 9.5 93 6.5 94 3.5 95 2.5 96 2.0 97 1.5 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 6.778780464856226E-6 2 0.0 3 1.559119506916932E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 6.778780464856226E-6 10-11 3.389390232428113E-6 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.001474384751106229 20-21 0.0030675502702850743 22-23 0.00520360908766427 24-25 0.0011596895572091644 26-27 0.001876081142646727 28-29 0.0043393602451989805 30-31 0.008256182365087022 32-33 0.01495631132446021 34-35 2.571251522395172E-4 36-37 9.040866233689691E-4 38-39 0.0019776407518781233 40-41 0.0028304272405099465 42-43 3.0907397493751113E-4 44-45 2.5164927338788802E-5 46-47 0.004026158736682478 48-49 0.003492294249047833 50-51 9.230801082926192E-4 52-53 0.001149107510120651 54-55 0.0010056329977934958 56-57 0.0014905869242153086 58-59 7.255845220663E-4 60-61 4.449803102172286E-4 62-63 0.0017623461704157363 64-65 5.418954001718256E-4 66-67 0.002184545082733554 68-69 0.0017760069090019715 70-71 5.908526990618875E-4 72-73 8.322977407601258E-4 74-75 0.008234897229094842 76-77 0.0031812027741685445 78-79 0.006655196134438744 80-81 1.2351396686788158E-4 82-83 0.00505394117444945 84-85 0.0029763452832651583 86-87 7.493654891829092E-4 88-89 0.0037372701071368697 90-91 8.935306335496593E-4 92-93 5.100183152677196E-5 94-95 6.950548312033213E-4 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 455.0 20-21 1466.0 22-23 3077.0 24-25 6677.0 26-27 10283.0 28-29 21070.0 30-31 46004.0 32-33 59899.0 34-35 84468.0 36-37 122113.0 38-39 141649.0 40-41 143066.0 42-43 158383.0 44-45 183593.0 46-47 182326.0 48-49 169041.0 50-51 154157.0 52-53 148709.0 54-55 159180.0 56-57 166658.0 58-59 163961.0 60-61 160567.0 62-63 154211.0 64-65 161028.0 66-67 169575.0 68-69 174012.0 70-71 171156.0 72-73 161915.0 74-75 164097.0 76-77 162055.0 78-79 172835.0 80-81 177417.0 82-83 170502.0 84-85 173049.0 86-87 182830.0 88-89 201066.0 90-91 211096.0 92-93 228604.0 94-95 262498.0 96-97 559337.0 98-99 2983928.0 100-101 5823903.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.1042016993355 #Duplication Level Percentage of deduplicated Percentage of total 1 88.98181726917699 73.05781072641922 2 7.215908839979514 11.84912869683392 3 1.9499371506746854 4.802940993600658 4 0.7818230214482755 2.5676382018469246 5 0.3904200951264333 1.6027565118867215 6 0.20691432236156349 1.019312115459308 7 0.13680872980638936 0.7862800082377578 8 0.07946264487903858 0.5219373618169002 9 0.05358858414985534 0.39598631296393827 >10 0.19491945297976415 2.5400826050738434 >50 0.005695211719413157 0.32597883567687197 >100 0.0025535011096115352 0.36425274409077885 >500 5.039392591542902E-5 0.03458951069811929 >1k 1.0078266264416739E-4 0.13130537539515896 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.3557560929712453E-5 0.0 2 0.0 8.812414604313094E-5 0.0 2.0336341394568678E-5 6.778780464856226E-6 3 0.0 1.0168170697284339E-4 0.0 3.389390232428113E-5 6.778780464856226E-6 4 0.0 3.5927536463737996E-4 0.0 4.0672682789137356E-5 6.778780464856226E-6 5 0.0 3.7961170603194864E-4 0.0 6.1009024183706034E-5 6.778780464856226E-6 6 0.0 3.863904864968049E-4 0.0 6.1009024183706034E-5 6.778780464856226E-6 7 0.0 3.863904864968049E-4 0.0 1.0846048743769962E-4 6.778780464856226E-6 8 0.0 4.677358520750796E-4 0.0 1.0846048743769962E-4 6.778780464856226E-6 9 0.0 8.066748753178909E-4 0.0 1.4235438976198075E-4 1.3557560929712453E-5 10-11 3.389390232428113E-6 8.066748753178909E-4 0.0 1.49133170226837E-4 1.3557560929712453E-5 12-13 6.778780464856226E-6 8.066748753178909E-4 0.0 1.7285890185383376E-4 1.3557560929712453E-5 14-15 6.778780464856226E-6 0.001108330606003993 0.0 1.7963768231869E-4 2.3725731626996793E-5 16-17 2.0336341394568678E-5 0.0011490032887931303 0.0 1.830270725511181E-4 4.0672682789137356E-5 18-19 2.0336341394568678E-5 0.0012540743859984018 0.0 1.8980585301597432E-4 4.745146325399358E-5 20-21 2.0336341394568678E-5 0.001376092434365814 0.0 2.2031036510782736E-4 4.745146325399358E-5 22-23 2.0336341394568678E-5 0.001535393775289935 0.0 2.4403609673482414E-4 6.439841441613414E-5 24-25 2.0336341394568678E-5 0.0016641906041222035 0.0 2.813193892915334E-4 7.795597534584659E-5 26-27 2.0336341394568678E-5 0.001735367799003194 0.0 3.9316926696166107E-4 8.473475581070283E-5 28-29 2.0336341394568678E-5 0.001738757189235622 0.0 8.981884115934499E-4 8.812414604313094E-5 30-31 2.0336341394568678E-5 0.0019929614566677302 0.0 0.0023183429189808295 9.490292650798717E-5 32-33 2.0336341394568678E-5 0.002009908407829871 0.0 0.00485021742260463 1.0846048743769962E-4 34-35 2.0336341394568678E-5 0.002338679260375398 0.0 0.008463307410372998 1.1523926790255584E-4 36-37 2.0336341394568678E-5 0.002664060722688497 0.0 0.013693136539009578 1.1523926790255584E-4 38-39 2.0336341394568678E-5 0.0027284591371046314 0.0 0.021492123463826666 1.2879682883226829E-4 40-41 2.0336341394568678E-5 0.003019946697093449 0.0 0.029697837216535128 1.2879682883226829E-4 42-43 2.0336341394568678E-5 0.003084345111509583 0.0 0.0375069923120495 1.355756092971245E-4 44-45 2.0336341394568678E-5 0.003487682549168528 0.0 0.04629907057496803 1.4574377999440884E-4 46-47 2.0336341394568678E-5 0.0038300109626437677 0.0 0.055379247007642934 1.4913317022683696E-4 48-49 2.3725731626996793E-5 0.0038469579138059084 0.0 0.06478480490263096 1.6269073115654942E-4 50-51 2.7115121859424905E-5 0.004250295351464854 0.0 0.07373957389670603 1.6269073115654942E-4 52-53 2.7115121859424905E-5 0.004280799863556707 0.0 0.0825723248424137 1.864164627835462E-4 54-55 3.0504512091853017E-5 0.004318083156113416 0.0 0.09136779249556465 2.10142194410543E-4 56-57 3.389390232428113E-5 0.004379092180297122 0.0 0.10054626124497998 2.1692097487539921E-4 58-59 3.389390232428113E-5 0.004419764863086259 0.0 0.10953831353161175 2.2708914557268355E-4 60-61 4.4062073021565465E-5 0.00447060571657268 0.0 0.11787960289361735 2.3047853580511168E-4 62-63 6.1009024183706034E-5 0.004558729862615812 0.0 0.12582772298866127 2.3047853580511168E-4 64-65 6.1009024183706034E-5 0.004989182422134183 0.0 0.1335962054013865 2.3047853580511168E-4 66-67 6.778780464856226E-5 0.005016297543993607 0.0 0.14154432549643042 2.3047853580511168E-4 68-69 6.778780464856226E-5 0.005090864129107026 0.0 0.1492687458361341 2.3047853580511168E-4 70-71 6.778780464856226E-5 0.00513831559236102 0.0 0.15609158837401188 2.3047853580511168E-4 72-73 7.117719488099037E-5 0.0051552625435231595 0.0 0.16137903713659973 2.4403609673482414E-4 74-75 7.456658511341848E-5 0.005250165470031147 0.0 0.16548019931783775 2.4403609673482414E-4 76-77 7.456658511341848E-5 0.0054433607132795495 0.0 0.16938816625582737 2.4403609673482414E-4 78-79 7.456658511341848E-5 0.005538263639787537 0.0 0.17184208478410534 2.4403609673482414E-4 80-81 7.795597534584659E-5 0.005555210590949678 0.0 0.1727775564882555 2.4403609673482414E-4 82-83 8.134536557827471E-5 0.0055721575421118184 0.0 0.17341137246171956 2.4403609673482414E-4 84-85 8.134536557827471E-5 0.0055823257128091025 0.0 0.1736587979486868 2.4403609673482414E-4 86-87 8.134536557827471E-5 0.005673839249084661 0.0 0.17377403721658935 2.4403609673482414E-4 88 8.812414604313094E-5 0.005917875345819485 0.0 0.17378081599705422 2.508148771996804E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 18060 0.0 50.53494 1 GTATCAA 32055 0.0 34.852222 1 TCAACGC 40000 0.0 27.442636 4 ATCAACG 40970 0.0 26.822718 3 TATCAAC 41430 0.0 26.74039 2 CAACGCA 41780 0.0 26.254042 5 AACGCAG 42375 0.0 25.981167 6 GTACATG 53915 0.0 22.798681 1 TACATGG 53965 0.0 22.371485 2 ACGCAGA 50450 0.0 21.806547 7 ACATGGG 55760 0.0 21.272871 3 CGCAGAG 51840 0.0 21.2375 8 GTGGTAT 8715 0.0 20.208885 1 CATGGGG 41750 0.0 19.50785 4 TGGTATC 9040 0.0 18.494766 2 GCAGAGT 60235 0.0 18.183292 9 GAGTACT 30900 0.0 17.775566 12-13 CAGAGTA 57310 0.0 17.312788 10-11 AGAGTAC 53580 0.0 16.704096 10-11 CGTCGAA 1140 0.0 16.189758 94 >>END_MODULE