##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138722_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 12273914 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.751042414017242 31.0 31.0 34.0 30.0 34.0 2 32.02396277177761 33.0 31.0 34.0 30.0 34.0 3 31.930904273893397 31.0 31.0 34.0 30.0 34.0 4 35.78782196127494 37.0 35.0 37.0 35.0 37.0 5 35.56469118163937 37.0 35.0 37.0 33.0 37.0 6 35.64955587924113 37.0 35.0 37.0 33.0 37.0 7 35.56548620106023 37.0 35.0 37.0 33.0 37.0 8 35.55262697783282 37.0 35.0 37.0 33.0 37.0 9 37.27358363436472 39.0 37.0 39.0 34.0 39.0 10-11 37.14787234943964 39.0 37.0 39.0 33.0 39.0 12-13 37.10768288746361 39.0 37.0 39.0 33.0 39.0 14-15 38.28940743759489 40.0 38.0 41.0 33.0 41.0 16-17 38.24344728177173 40.0 38.0 41.0 33.0 41.0 18-19 38.24275699666789 40.0 38.0 41.0 33.0 41.0 20-21 38.2424368920054 40.0 38.0 41.0 33.0 41.0 22-23 38.17442362649851 40.0 37.5 41.0 33.0 41.0 24-25 38.092385385104826 40.0 37.0 41.0 33.0 41.0 26-27 37.92441976006276 40.0 37.0 41.0 33.0 41.0 28-29 37.777276113096676 40.0 37.0 41.0 32.0 41.0 30-31 37.62084773269946 40.0 37.0 41.0 32.0 41.0 32-33 37.46117235505195 39.0 36.0 41.0 32.0 41.0 34-35 37.33222634026394 39.0 36.0 41.0 31.0 41.0 36-37 37.41918104826773 39.0 36.0 41.0 31.0 41.0 38-39 37.38824861845596 39.0 36.0 41.0 31.0 41.0 40-41 37.35396259516028 39.0 36.0 41.0 31.0 41.0 42-43 37.440776120287694 39.0 36.0 41.0 31.0 41.0 44-45 37.4788561990718 40.0 36.0 41.0 31.5 41.0 46-47 37.361200899557375 39.0 36.0 41.0 31.0 41.0 48-49 37.29893391602382 39.0 36.0 41.0 31.0 41.0 50-51 37.204074610375116 39.0 36.0 41.0 31.0 41.0 52-53 37.04951401263193 39.0 35.0 41.0 31.0 41.0 54-55 36.877703419088014 39.0 35.0 40.5 31.0 41.0 56-57 36.73516772650705 39.0 35.0 40.0 30.5 41.0 58-59 36.473244607678296 38.0 35.0 40.0 30.0 41.0 60-61 36.31016364669519 38.0 35.0 40.0 30.0 41.0 62-63 36.0506555885552 38.0 34.0 40.0 29.5 41.0 64-65 35.74089514119838 37.0 34.0 40.0 29.0 41.0 66-67 35.41054037466087 36.5 34.0 39.5 29.0 41.0 68-69 35.177777899212316 36.0 34.0 39.0 29.0 41.0 70-71 34.852514527237446 36.0 33.5 39.0 28.5 40.0 72-73 34.555564604276185 35.0 33.0 38.5 28.0 40.0 74-75 34.27552388278601 35.0 33.0 37.5 28.0 39.5 76-77 32.91469196177157 34.0 31.5 36.0 26.5 39.0 78-79 33.665951057396526 35.0 32.5 36.0 28.0 39.0 80-81 33.69871667378224 35.0 33.0 36.0 29.0 38.5 82-83 33.471801410242946 35.0 33.0 36.0 29.0 37.0 84-85 33.269666335904304 35.0 33.0 35.0 28.0 37.0 86-87 33.099579854280734 35.0 32.5 35.0 28.0 36.5 88-89 32.98605236999498 35.0 32.0 35.0 28.0 36.0 90-91 32.85108786615358 34.5 32.0 35.0 28.0 36.0 92-93 32.84367521241377 34.0 32.0 35.0 29.0 36.0 94-95 32.783822145181176 34.0 32.0 35.0 29.0 35.0 96-97 32.88630544088494 34.0 32.0 35.0 29.0 35.0 98-99 33.011910493929776 34.0 32.0 35.0 29.0 35.0 100 31.96447544704735 34.0 31.0 35.0 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 1.0 18 2.0 19 20.0 20 99.0 21 611.0 22 2886.0 23 9758.0 24 24977.0 25 52354.0 26 93317.0 27 144622.0 28 205354.0 29 269249.0 30 336271.0 31 410890.0 32 499247.0 33 618748.0 34 795017.0 35 1057039.0 36 1539267.0 37 2360857.0 38 2545408.0 39 1263399.0 40 44520.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.81842890540051 20.100238603594583 13.719128225926955 24.362204265077953 2 15.641848231949481 21.090542104173128 39.62424700059003 23.64336266328736 3 18.658447490891035 25.486970358807742 30.270690674577004 25.58389147572422 4 13.251624542912719 17.381945156206896 37.620729622188975 31.745700678691406 5 13.540269224633642 37.55795421085727 35.2606348716473 13.641141692861789 6 31.259009962103367 36.940172466582375 18.025643653687 13.775173917627253 7 27.376955712741672 32.11167195729088 22.570974507398372 17.940397822569068 8 25.236578975541136 36.03908256160178 20.684950212295767 18.039388250561313 9 25.836762421506293 16.26830691497431 20.969504919131747 36.92542574438765 10-11 24.986243182085193 26.243820838242797 28.29669085183422 20.473245127837785 12-13 25.432632980807917 23.754354153043604 28.577607762283492 22.235405103864995 14-15 22.49003862989426 25.246995375721227 26.093591661144117 26.1693743332404 16-17 22.27392582349852 28.187536591832075 26.884806264733484 22.653731319935922 18-19 22.261499918891726 27.64646194791684 28.32819511807222 21.763843015119217 20-21 23.081726209294974 26.74947687664393 28.182321526933517 21.98647538712758 22-23 22.824046045233576 26.604119198843318 28.06854021918373 22.503294536739375 24-25 22.571542887906755 26.81140026435802 28.123742020876357 22.493314826858864 26-27 22.5450885622309 26.888760748625508 28.11249120168471 22.453659487458882 28-29 22.50141038041619 26.995550536515978 28.15126249352972 22.351776589538115 30-31 22.72635950377643 26.92050808350724 27.951731429005513 22.401400983710822 32-33 22.50904680420073 27.06468421941078 27.92053182855931 22.505737147829187 34-35 22.65871644068163 27.092335931363415 27.867466493441782 22.38148113451317 36-37 22.703599844257784 26.957990617186116 27.82570908239116 22.51270045616494 38-39 22.57056034862487 27.123608834136892 27.930662669709278 22.375168147528964 40-41 22.807341564667123 26.952223941620172 27.814813324029895 22.425621169682803 42-43 22.58316948991411 27.14100673465179 27.57348357138681 22.702340204047296 44-45 22.69624261295215 27.22384269135431 27.39001912935303 22.689895566340514 46-47 22.755104277560896 27.16096964223482 27.239664096960215 22.844261983244067 48-49 22.751706851281366 27.216237573722086 27.222250751360445 22.809804823636103 50-51 22.734126158583436 27.328793647045234 27.13477752583081 22.802302668540516 52-53 22.877990949562506 27.264908677167725 26.980530278252484 22.87657009501728 54-55 22.85101420920034 27.192069681511256 27.02683114745455 22.930084961833856 56-57 22.840603983309872 27.331202329311683 27.007742734128577 22.820450953249864 58-59 22.810383589924278 27.28317595450045 27.056040067853225 22.850400387722047 60-61 22.861686798184863 27.316756285085138 27.04887625784313 22.77268065888687 62-63 22.91031617500027 27.368092382543868 26.98413147172733 22.737459970728537 64-65 22.80966398038423 27.302693782333602 27.026085377152132 22.861556860130037 66-67 22.878941342593798 27.30356096169843 26.873993400744993 22.94350429496278 68-69 22.816035833828874 27.322467023289487 26.97483529528059 22.886661847601044 70-71 22.771622596417608 27.114436011345393 27.047797438154152 23.066143954082843 72-73 22.903499402348455 27.106961422631176 26.98516460159384 23.00437457342653 74-75 22.719451784857792 27.31135152138281 26.957585336908725 23.011611356850675 76-77 22.838973155054784 27.171823092176005 26.98639345849737 23.00281029427184 78-79 22.774655825502286 27.106145604238268 27.002458370153576 23.11674020010587 80-81 22.75898617714432 27.215200917468447 26.928630646161956 23.097182259225278 82-83 22.85689857935979 27.1349907828138 27.038762221118468 22.969348416707945 84-85 22.941441898203628 27.12456428205113 26.95355706954669 22.980436750198553 86-87 22.718617967851078 27.126178291010778 27.12619540655347 23.02900833458467 88-89 22.776064496911914 27.035655320056563 27.12616503227959 23.062115150751936 90-91 22.876215634747062 27.064433797360156 27.066987975569017 22.992362592323765 92-93 22.929562953371484 27.043208273479063 27.087338499414926 22.939890273734527 94-95 22.70387599630518 27.049634019457553 27.20421558570503 23.042274398532246 96-97 22.70044084058197 27.172007730684527 27.303912887534626 22.823638541198882 98-99 23.867711568011757 29.184673499409413 27.439799575139755 19.507815357439075 100 30.858477535986268 40.77366694076459 28.36785552324914 0.0 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2194.0 1 1965.5 2 2819.0 3 4106.0 4 5535.0 5 8989.5 6 12071.5 7 14419.5 8 15997.5 9 15957.0 10 14525.0 11 12822.0 12 13562.0 13 17863.0 14 28037.0 15 41823.0 16 53276.5 17 60281.0 18 62621.0 19 61024.0 20 57444.0 21 53578.5 22 51760.0 23 54542.0 24 63101.5 25 77374.5 26 97392.5 27 119821.0 28 141423.5 29 165502.0 30 189741.0 31 212542.5 32 238605.5 33 266945.5 34 293341.5 35 319503.0 36 348654.0 37 374562.5 38 396654.0 39 414850.5 40 432092.5 41 450787.0 42 466374.5 43 485553.0 44 504757.0 45 521195.0 46 534443.5 47 542053.5 48 546663.0 49 547085.0 50 543628.0 51 537719.0 52 525021.5 53 507142.5 54 488004.0 55 463188.5 56 432390.0 57 396578.5 58 356700.5 59 311403.5 60 264947.5 61 220366.5 62 178638.0 63 140639.5 64 106422.0 65 79706.5 66 59511.0 67 45341.5 68 34503.5 69 25068.5 70 17876.0 71 12421.5 72 8502.0 73 5707.5 74 3798.0 75 2538.0 76 1739.0 77 1196.0 78 847.0 79 596.0 80 396.0 81 260.0 82 187.5 83 139.5 84 98.5 85 67.0 86 44.5 87 30.5 88 20.0 89 14.0 90 10.5 91 7.5 92 6.0 93 4.0 94 2.5 95 1.5 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 1.2221040492869673E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0016050299847302173 20-21 0.003332559538539096 22-23 0.004979403727405599 24-25 0.0012228080106641902 26-27 0.0017331259291339081 28-29 0.004607860274983551 30-31 0.007976038361841914 32-33 0.014926085532374926 34-35 2.1824640414342032E-4 36-37 9.86015156461548E-4 38-39 0.0020467808043539456 40-41 0.0030261237508441433 42-43 3.3192704073425666E-4 44-45 8.606164156470908E-6 46-47 0.0040526568237655115 48-49 0.0038336397965868076 50-51 7.98762783383967E-4 52-53 0.0011592234447844732 54-55 0.0011311331819925787 56-57 0.0015697417322395495 58-59 7.013059438764489E-4 60-61 5.349523927876108E-4 62-63 0.0016819091077151134 64-65 4.8511384506181763E-4 66-67 0.0020155544763326466 68-69 0.0016798819038036812 70-71 5.915977644885706E-4 72-73 7.178945997404298E-4 74-75 0.008531338189004336 76-77 0.0034175520833882706 78-79 0.006797121445828013 80-81 1.1959213212060389E-4 82-83 0.004777232933901432 84-85 0.0028449888467458936 86-87 6.96027224933749E-4 88-89 0.00403101066963219 90-91 0.001031142518948429 92-93 4.8428208026757554E-5 94-95 6.513225818377519E-4 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 517.0 20-21 2030.0 22-23 3292.0 24-25 5285.0 26-27 8856.0 28-29 15552.0 30-31 34415.0 32-33 46898.0 34-35 66159.0 36-37 94247.0 38-39 106886.0 40-41 110969.0 42-43 124041.0 44-45 144178.0 46-47 142641.0 48-49 132236.0 50-51 121616.0 52-53 119585.0 54-55 130950.0 56-57 135884.0 58-59 133335.0 60-61 128548.0 62-63 126031.0 64-65 134058.0 66-67 139954.0 68-69 141784.0 70-71 140036.0 72-73 132779.0 74-75 137163.0 76-77 135642.0 78-79 144035.0 80-81 145573.0 82-83 142446.0 84-85 145026.0 86-87 152142.0 88-89 167581.0 90-91 175884.0 92-93 192499.0 94-95 222330.0 96-97 470685.0 98-99 2496115.0 100-101 4924031.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.66295171471303 #Duplication Level Percentage of deduplicated Percentage of total 1 89.25045001562816 74.66956090173908 2 7.235250208306537 12.106447776428345 3 1.8954579216786818 4.757388137360215 4 0.7300683337070694 2.4431868700550217 5 0.3510025405689526 1.468295430168094 6 0.1794357061985584 0.9007272494151253 7 0.10766584461837124 0.6305349651741412 8 0.06275099317604618 0.41999466497102705 9 0.04445013186078049 0.33469463120229953 >10 0.13782576163862675 1.7924084214197191 >50 0.004200393752929631 0.2351066693813639 >100 0.0013534564290335288 0.17941585682970818 >500 5.322020621850189E-5 0.024919454414267926 >1k 3.5472229979129445E-5 0.03731897144164639 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 4.073680164289892E-5 0.0 0.0 0.0 3 0.0 4.073680164289892E-5 0.0 1.6294720657159565E-5 0.0 4 0.0 1.466524859144361E-4 0.0 2.444208098573935E-5 8.147360328579782E-6 5 8.147360328579782E-6 1.466524859144361E-4 0.0 2.444208098573935E-5 8.147360328579782E-6 6 8.147360328579783E-5 1.466524859144361E-4 0.0 2.444208098573935E-5 8.147360328579782E-6 7 8.962096361437761E-5 1.466524859144361E-4 0.0 3.258944131431913E-5 8.147360328579782E-6 8 8.962096361437761E-5 1.7109456690017546E-4 0.0 3.258944131431913E-5 1.6294720657159565E-5 9 8.962096361437761E-5 2.770102511717126E-4 0.0 5.703152230005848E-5 3.258944131431913E-5 10-11 9.36946437786675E-5 2.770102511717126E-4 0.0 9.36946437786675E-5 3.258944131431913E-5 12-13 9.77683239429574E-5 2.770102511717126E-4 0.0 1.385051255858563E-4 3.258944131431913E-5 14-15 1.0591568427153718E-4 3.421891338003509E-4 0.0 1.7516824706446534E-4 5.295784213576859E-5 16-17 1.466524859144361E-4 3.421891338003509E-4 0.0 1.996103280502047E-4 9.77683239429574E-5 18-19 1.466524859144361E-4 3.6663121478609025E-4 0.0 2.4849449002168337E-4 1.0184200410724729E-4 20-21 1.5072616607872597E-4 3.951469759361195E-4 0.0 3.910732957718296E-4 1.0591568427153718E-4 22-23 1.6294720657159567E-4 4.195890569218588E-4 0.0 6.314204254649332E-4 1.0998936443582706E-4 24-25 1.6702088673588555E-4 4.521784982361779E-4 0.0 7.984413122008188E-4 1.1406304460011696E-4 26-27 1.7109456690017546E-4 4.725468990576274E-4 0.0 9.04356996472356E-4 1.1406304460011696E-4 28-29 1.7109456690017546E-4 4.766205792219173E-4 0.0 0.0014176406971728823 1.1406304460011696E-4 30-31 1.7109456690017546E-4 5.703152230005849E-4 0.0 0.00262345002580269 1.1406304460011696E-4 32-33 1.7516824706446534E-4 5.743889031648747E-4 0.0 0.005381331497026947 1.1813672476440685E-4 34-35 1.9146296772162488E-4 6.721572271078322E-4 0.0 0.008676938749937468 1.2221040492869676E-4 36-37 2.0775768837878446E-4 7.699255510507895E-4 0.0 0.013707933752835485 1.2221040492869676E-4 38-39 2.1183136854307437E-4 7.90293951872239E-4 0.0 0.021443852384821986 1.2221040492869676E-4 40-41 2.1183136854307437E-4 8.391781138437177E-4 0.0 0.029420118146501598 1.2221040492869676E-4 42-43 2.1590504870736427E-4 8.595465146651671E-4 0.0 0.03724973142226677 1.2221040492869676E-4 44-45 2.2812608920023394E-4 9.858305997581538E-4 0.0 0.04576372296563264 1.2221040492869676E-4 46-47 2.973786519931621E-4 0.001091746284029691 0.0 0.05508430318152791 1.3035776525727652E-4 48-49 3.01452332157452E-4 0.0010998936443582707 0.0 0.06417675730822295 1.466524859144361E-4 50-51 3.01452332157452E-4 0.0011772935674797787 0.0 0.07355436904641828 1.5072616607872597E-4 52-53 3.01452332157452E-4 0.0011895146079726484 0.0 0.08282199142017779 1.6702088673588555E-4 54-55 3.055260123217419E-4 0.0011935882881369381 0.0 0.09114859367598632 1.8331560739304512E-4 56-57 3.421891338003509E-4 0.0012139566889583877 0.0 0.09934483816653758 1.87389287557335E-4 58-59 3.7477857511467E-4 0.0012343250897798373 0.0 0.10761440890004606 1.9146296772162488E-4 60-61 4.0329433626469925E-4 0.0012587671707655766 0.0 0.11572103242698295 1.955366478859148E-4 62-63 4.4810481807188807E-4 0.001275061891422736 0.0 0.12282960431366882 1.955366478859148E-4 64-65 4.4810481807188807E-4 0.0014013459765157227 0.0 0.1301703759697192 1.955366478859148E-4 66-67 4.6847321889333755E-4 0.001421714377337172 0.0 0.13799184188515579 1.955366478859148E-4 68-69 4.88841619714787E-4 0.0014543038186514913 0.0 0.14545075026597057 1.955366478859148E-4 70-71 4.929152998790769E-4 0.0014828195798015204 0.0 0.1520460384519559 2.1183136854307437E-4 72-73 5.540205023434252E-4 0.0014909669401301003 0.0 0.1572847911432327 2.362734495288137E-4 74-75 5.62167862672005E-4 0.0015235563814444194 0.0 0.16179028140493734 2.362734495288137E-4 76-77 5.703152230005849E-4 0.001580587903744478 0.0 0.16572545644364137 2.403471296931036E-4 78-79 5.906836238220342E-4 0.0016050299847302173 0.0 0.16855666415782283 2.444208098573935E-4 80-81 6.029046643149039E-4 0.0016091036648945073 0.0 0.16948138955511666 2.444208098573935E-4 82-83 6.151257048077736E-4 0.001617251025223087 0.0 0.17009651525992442 2.6071553051455304E-4 84-85 6.191993849720635E-4 0.001621324705387377 0.0 0.1703898202317533 2.6071553051455304E-4 86-87 6.436414659578029E-4 0.0016457667863731163 0.0 0.17048758855569623 2.6071553051455304E-4 88 6.436414659578029E-4 0.0017516824706446533 0.0 0.17049980959618913 2.6071553051455304E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 19555 0.0 34.39519 1 GTATCAA 29965 0.0 26.559425 1 TCAACGC 32185 0.0 23.865162 4 CAACGCA 32685 0.0 23.525059 5 ATCAACG 32995 0.0 23.304033 3 AACGCAG 33430 0.0 23.135086 6 GTACATG 36370 0.0 21.601593 1 TACATGG 36530 0.0 21.10477 2 TATCAAC 37835 0.0 20.786734 2 ACATGGG 37430 0.0 20.182962 3 ACGCAGA 39075 0.0 19.677967 7 CGCAGAG 40625 0.0 18.957315 8 CATGGGG 28275 0.0 17.696451 4 GAGTACT 23400 0.0 17.310987 12-13 CAGAGTA 41220 0.0 16.757877 10-11 GCAGAGT 46220 0.0 16.42409 9 AGAGTAC 38075 0.0 16.244799 10-11 GTACTTT 25960 0.0 15.621175 14-15 GAGTACA 26300 0.0 15.285471 1 ATGGGGG 17170 0.0 14.61851 5 >>END_MODULE