##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138721_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 19971200 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.754347460342895 31.0 31.0 34.0 30.0 34.0 2 32.0211362862522 33.0 31.0 34.0 30.0 34.0 3 31.921580525957378 31.0 31.0 34.0 30.0 34.0 4 35.78327186148053 37.0 35.0 37.0 35.0 37.0 5 35.56951395008813 37.0 35.0 37.0 33.0 37.0 6 35.65718689913476 37.0 35.0 37.0 33.0 37.0 7 35.57382931421247 37.0 35.0 37.0 33.0 37.0 8 35.556550983416116 37.0 35.0 37.0 33.0 37.0 9 37.2749476746515 39.0 37.0 39.0 34.0 39.0 10-11 37.14843299351065 39.0 37.0 39.0 33.0 39.0 12-13 37.10846506469316 39.0 37.0 39.0 33.0 39.0 14-15 38.27740689092293 40.0 38.0 41.0 33.0 41.0 16-17 38.232136776958825 40.0 38.0 41.0 33.0 41.0 18-19 38.244057092212785 40.0 38.0 41.0 33.0 41.0 20-21 38.24978729399264 40.0 38.0 41.0 33.0 41.0 22-23 38.181143915314905 40.0 37.5 41.0 33.0 41.0 24-25 38.099768247936105 40.0 37.0 41.0 33.0 41.0 26-27 37.933241851547535 40.0 37.0 41.0 33.0 41.0 28-29 37.78410314371923 40.0 37.0 41.0 32.5 41.0 30-31 37.62139021756044 39.5 37.0 41.0 32.0 41.0 32-33 37.449020881328906 39.0 36.0 41.0 32.0 41.0 34-35 37.32264473947254 39.0 36.0 41.0 31.0 41.0 36-37 37.40997441672238 39.0 36.0 41.0 31.0 41.0 38-39 37.38066787957412 39.0 36.0 41.0 31.0 41.0 40-41 37.344445215142734 39.0 36.0 41.0 31.0 41.0 42-43 37.428298031829144 39.0 36.0 41.0 31.5 41.0 44-45 37.46845178060797 40.0 36.0 41.0 32.0 41.0 46-47 37.349550851417355 39.0 36.0 41.0 31.0 41.0 48-49 37.28925716737764 39.0 36.0 41.0 31.0 41.0 50-51 37.19557186805405 39.0 36.0 41.0 31.0 41.0 52-53 37.04558780110257 39.0 35.0 41.0 31.0 41.0 54-55 36.87640648338456 39.0 35.0 40.5 31.0 41.0 56-57 36.73875973127613 39.0 35.0 40.0 31.0 41.0 58-59 36.481849825248474 38.0 35.0 40.0 30.0 41.0 60-61 36.324845706805924 38.0 35.0 40.0 30.0 41.0 62-63 36.063927969144885 38.0 34.0 40.0 29.5 41.0 64-65 35.75880330852985 37.0 34.0 40.0 29.0 41.0 66-67 35.42813058388873 37.0 34.0 39.5 29.0 41.0 68-69 35.19675481979983 36.0 34.0 39.0 29.0 41.0 70-71 34.87634769573496 36.0 33.5 39.0 29.0 40.0 72-73 34.57854463609495 35.0 33.0 38.5 28.0 40.0 74-75 34.295348968151146 35.0 33.0 37.5 28.0 39.5 76-77 32.94105827538175 34.0 31.5 36.0 26.5 39.0 78-79 33.69103969384949 35.0 32.5 36.0 28.0 39.0 80-81 33.72208714587704 35.0 33.0 36.0 29.0 38.5 82-83 33.48801742730889 35.0 33.0 36.0 29.0 37.0 84-85 33.28400770252766 35.0 33.0 35.0 29.0 37.0 86-87 33.11450803406646 35.0 32.5 35.0 28.0 36.5 88-89 32.99937762096631 35.0 32.0 35.0 28.0 36.0 90-91 32.86437032197985 34.5 32.0 35.0 28.0 36.0 92-93 32.85669256201271 34.0 32.0 35.0 29.0 36.0 94-95 32.79525681717757 34.0 32.0 35.0 29.0 35.0 96-97 32.8959192106619 34.0 32.0 35.0 29.0 35.0 98-99 33.0212087659663 34.0 32.0 35.0 29.0 35.0 100 31.984900272650254 34.0 31.0 35.0 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 1.0 15 0.0 16 0.0 17 0.0 18 7.0 19 36.0 20 200.0 21 1070.0 22 4717.0 23 15599.0 24 39944.0 25 83439.0 26 148637.0 27 232363.0 28 327957.0 29 431899.0 30 543070.0 31 664778.0 32 813337.0 33 1006499.0 34 1297538.0 35 1726012.0 36 2504429.0 37 3819736.0 38 4144256.0 39 2089930.0 40 75745.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.53551614324628 19.968194199647492 13.590395169043424 23.90589448806281 2 15.753705335683385 21.3337055359718 39.616647973081236 23.29594115526358 3 18.78392360024301 26.028424083264458 30.015472809470335 25.172179507022204 4 13.045595657747155 17.486790979009776 37.60422007691075 31.863393286332318 5 13.34755047268066 38.04526518186188 34.983210823585964 13.623973521871493 6 30.90752683864765 36.882610959782085 18.312505007210383 13.897357194359877 7 27.55179458420125 32.323841331517386 22.439232494792503 17.685131589488865 8 25.64172408267906 35.78961704854991 20.6689082278481 17.899750640922928 9 26.444019387918605 15.907682062169522 20.808083640442238 36.84021490946964 10-11 25.034935306841856 26.45714578993751 28.045475484697963 20.46244341852267 12-13 25.620430920525557 24.113170465470276 28.36817517224804 21.89822344175613 14-15 22.720096939593017 25.29742078593174 26.16949907867329 25.81298319580195 16-17 22.110584241307482 28.37609908267906 26.948898914436786 22.56441776157667 18-19 22.126857832804443 27.58152637563581 28.692886821957575 21.59872896960217 20-21 23.136857946162838 26.61804983228028 28.582037540412625 21.663054681144253 22-23 22.844879795678985 26.58783520086115 28.386474548232293 22.180810455227576 24-25 22.49184301519949 26.747310952666293 28.537915264339208 22.22293076779501 26-27 22.33274651107883 26.899305180198635 28.553132572865014 22.214815735857517 28-29 22.285520145835207 26.950554405712708 28.541982996057985 22.221942452394096 30-31 22.59845321569539 26.869000047761816 28.36602513497486 22.166521601567936 32-33 22.32893334576113 27.03554519368181 28.322341304010184 22.313180156546878 34-35 22.48674185012947 27.07029318533855 28.34681448328456 22.096150481247417 36-37 22.51534612400466 26.989439395444602 28.228578920000295 22.26663556055044 38-39 22.315602836697238 27.150727144250773 28.312918674594645 22.220751344457348 40-41 22.56668123975986 26.9856021055811 28.221708056793453 22.226008597865583 42-43 22.38476760613217 27.063345119243888 27.971614215433167 22.580273059190784 44-45 22.435120840522234 27.224781395279745 27.82513054744582 22.514967216752197 46-47 22.56486520006071 27.187210885407442 27.568749372761502 22.679174541770347 48-49 22.57004483516953 27.322095354296817 27.43369410871617 22.67416570181748 50-51 22.591203175961038 27.39558315119582 27.32360188221858 22.689611790624568 52-53 22.717046750488723 27.310819328012514 27.221072973236062 22.751060948262698 54-55 22.692358179007073 27.262616371027775 27.274057634269706 22.770967815695446 56-57 22.66701148581611 27.392720200068275 27.205244795300214 22.735023518815396 58-59 22.613144877814882 27.41360976194119 27.265901100871115 22.707344259372817 60-61 22.746141396041462 27.46633668565642 27.176294877696094 22.611227040606032 62-63 22.770426300318046 27.47448841564016 27.156802734095344 22.598282549946454 64-65 22.65637832723102 27.37040889502475 27.22612649183615 22.74708628590808 66-67 22.755658089716 27.383981501151144 27.049189302863446 22.81117110626941 68-69 22.64493316888175 27.387277450422516 27.155035528515732 22.812753852180006 70-71 22.652313873974826 27.178215611407907 27.252050661362976 22.91741985325429 72-73 22.739186858542322 27.270881095046708 27.14180738118636 22.84812466522461 74-75 22.53055849218208 27.395020996673196 27.170308474941496 22.904112036203227 76-77 22.644213453075064 27.22829865593844 27.196559884389558 22.930928006596943 78-79 22.586213989468437 27.194947608457632 27.18037591118041 23.038462490893522 80-81 22.67429681838027 27.310914309425954 27.06561450249632 22.949174369697456 82-83 22.713300498368824 27.181537199580784 27.243459865349486 22.861702436700902 84-85 22.71608041859968 27.20701940288011 27.131727970854335 22.94517220766587 86-87 22.57566251139836 27.313593322472745 27.24327798753505 22.867466178593844 88-89 22.69553089802655 27.108011822379556 27.246853305000982 22.949603974592907 90-91 22.719513583056415 27.106110301655743 27.2905920474539 22.88378406783394 92-93 22.740996128433395 27.122387969396378 27.282177745936252 22.85443815623397 94-95 22.580683562048602 27.100083890072117 27.358970082686124 22.960262465193157 96-97 22.564640215470842 27.26024825530475 27.41957685806675 22.755534671157662 98-99 23.669609998239576 29.283486098473333 27.607340988333284 19.439562914953807 100 30.571264254622527 40.79397801422402 28.63475773115346 0.0 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 5222.0 1 4668.5 2 6390.5 3 9234.5 4 12385.0 5 19636.5 6 25998.5 7 31200.0 8 35472.0 9 35682.5 10 32058.5 11 27837.0 12 29087.5 13 38151.0 14 59984.5 15 89397.0 16 113227.5 17 126107.5 18 127503.0 19 120468.5 20 108814.5 21 95963.5 22 88073.5 23 90007.5 24 102509.5 25 124543.5 26 155484.0 27 190005.0 28 224790.0 29 266958.0 30 311021.0 31 351919.0 32 399723.5 33 450066.5 34 491195.5 35 536353.0 36 588042.5 37 628516.0 38 661935.0 39 689084.5 40 712032.5 41 735111.0 42 754037.0 43 778421.0 44 805969.0 45 825140.0 46 838027.5 47 853950.0 48 869524.0 49 876608.5 50 875659.0 51 870066.5 52 854730.0 53 826468.5 54 791424.5 55 748857.0 56 698344.5 57 639267.0 58 572119.0 59 498479.5 60 425516.5 61 355177.5 62 288013.5 63 228792.5 64 177228.5 65 136185.0 66 103403.0 67 76677.5 68 56555.5 69 40736.5 70 28047.5 71 18613.5 72 12255.0 73 8051.0 74 5368.0 75 3702.5 76 2594.5 77 1765.0 78 1202.5 79 828.0 80 557.0 81 380.0 82 266.5 83 171.0 84 113.5 85 80.0 86 61.5 87 46.0 88 31.5 89 24.5 90 19.5 91 16.0 92 11.5 93 6.5 94 3.0 95 2.0 96 2.0 97 2.0 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 1.8526678416920365E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.001584782086204134 20-21 0.003001969106458012 22-23 0.0053160383550038895 24-25 0.001134606254686043 26-27 0.0017540711113458783 28-29 0.00435602709764836 30-31 0.008373319093247672 32-33 0.014634461174739221 34-35 2.176428810329594E-4 36-37 9.447871483685589E-4 38-39 0.0018676059534345466 40-41 0.0026899058623735734 42-43 3.4073309511721615E-4 44-45 5.30505428171329E-6 46-47 0.004087303512295201 48-49 0.0036161801142195154 50-51 8.856862425307471E-4 52-53 0.001289330223089292 54-55 0.0010331751991882743 56-57 0.00167204765901752 58-59 7.847232509850738E-4 60-61 4.6645391087720355E-4 62-63 0.0020441949602215408 64-65 5.175375886497508E-4 66-67 0.0022081499092233845 68-69 0.0019026224820183613 70-71 6.279786203422747E-4 72-73 8.347410827509422E-4 74-75 0.008336832325556792 76-77 0.0035147486821905556 78-79 0.006653011629324545 80-81 1.860019340819291E-4 82-83 0.0052493308392308384 84-85 0.003116085031812189 86-87 8.418162302382308E-4 88-89 0.003707559163330134 90-91 0.001026241625932934 92-93 8.675814244027268E-5 94-95 7.96186006211565E-4 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 607.0 20-21 1958.0 22-23 3690.0 24-25 8656.0 26-27 12975.0 28-29 27111.0 30-31 58541.0 32-33 76601.0 34-35 109702.0 36-37 160678.0 38-39 188876.0 40-41 194154.0 42-43 216197.0 44-45 252965.0 46-47 251128.0 48-49 232652.0 50-51 209096.0 52-53 200708.0 54-55 214720.0 56-57 226484.0 58-59 224474.0 60-61 218859.0 62-63 209396.0 64-65 220044.0 66-67 230112.0 68-69 237138.0 70-71 234754.0 72-73 220535.0 74-75 223893.0 76-77 222243.0 78-79 237048.0 80-81 242005.0 82-83 232168.0 84-85 234322.0 86-87 247048.0 88-89 273146.0 90-91 286857.0 92-93 309337.0 94-95 351740.0 96-97 746819.0 98-99 3991090.0 100-101 7930673.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.84167276073767 #Duplication Level Percentage of deduplicated Percentage of total 1 88.52823041035914 72.45298463331797 2 7.54512266291068 12.350109198351229 3 2.006490219972588 4.926435479418513 4 0.8415007813068892 2.7547932628649394 5 0.4068028399520575 1.6646712452747514 6 0.2101985654224739 1.0321801323649566 7 0.13146483062726655 0.7531511153419785 8 0.0912848317494501 0.5976722662445991 9 0.05573641447981103 0.4105405255242181 >10 0.17388812224373854 2.2473895646931625 >50 0.006410858845213075 0.35905676383473034 >100 0.0027923690332895684 0.39658284862328025 >500 6.42565750933863E-5 0.03859048214964123 >1k 1.2836522411371107E-5 0.01584248199598582 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 6.509373497836885E-5 0.0 0.0 0.0 3 0.0 6.509373497836885E-5 0.0 0.0 0.0 4 0.0 1.6523794263739784E-4 0.0 0.0 0.0 5 0.0 1.7525236340330076E-4 0.0 0.0 0.0 6 0.0 1.7525236340330076E-4 0.0 0.0 0.0 7 0.0 1.7525236340330076E-4 0.0 0.0 0.0 8 5.00721038295145E-6 2.503605191475725E-4 0.0 0.0 0.0 9 5.00721038295145E-6 6.259012978689312E-4 0.0 0.0 0.0 10-11 5.00721038295145E-6 6.259012978689312E-4 0.0 0.0 0.0 12-13 5.00721038295145E-6 6.409229290177856E-4 0.0 0.0 0.0 14-15 5.00721038295145E-6 8.762618170165037E-4 0.0 0.0 0.0 16-17 5.00721038295145E-6 9.038014741227368E-4 0.0 0.0 0.0 18-19 5.00721038295145E-6 9.989384713988143E-4 0.0 5.00721038295145E-6 0.0 20-21 7.510815574427175E-6 0.001119111520589649 0.0 1.2518025957378626E-5 0.0 22-23 1.2518025957378626E-5 0.0012543062009293384 0.0 3.755407787213588E-5 0.0 24-25 1.502163114885435E-5 0.0013794864605031244 0.0 6.759734016984457E-5 0.0 26-27 1.502163114885435E-5 0.0014320621695241148 0.0 1.6523794263739787E-4 0.0 28-29 1.502163114885435E-5 0.0014345657747155903 0.0 5.833400096138439E-4 0.0 30-31 1.7525236340330074E-5 0.001612321743310367 0.0 0.001802595737862522 0.0 32-33 2.00288415318058E-5 0.0016248397692677455 0.0 0.004261136035891684 0.0 34-35 2.00288415318058E-5 0.001930279602627784 0.0 0.007388138920044864 0.0 36-37 2.00288415318058E-5 0.002253244672328153 0.0 0.012660731453292742 0.0 38-39 2.00288415318058E-5 0.0023183384073065215 0.0 0.020987722320141004 0.0 40-41 2.00288415318058E-5 0.0026162674250921327 0.0 0.029384814132350584 0.0 42-43 2.00288415318058E-5 0.0027063972119852585 0.0 0.03704334241307483 0.0 44-45 2.00288415318058E-5 0.0030468875180259575 0.0 0.04600374539336645 0.0 46-47 2.00288415318058E-5 0.0032947444319820544 0.0 0.05601816615926935 0.0 48-49 2.00288415318058E-5 0.003307262457939433 0.0 0.06559195241147252 0.0 50-51 2.00288415318058E-5 0.0037478969716391603 0.0 0.07499048630027239 0.0 52-53 2.00288415318058E-5 0.003795465470277199 0.0 0.08381068738984138 0.0 54-55 2.00288415318058E-5 0.003840530363723762 0.0 0.09270098942477167 0.0 56-57 2.00288415318058E-5 0.003915638519468034 0.0 0.1007225404582599 0.0 58-59 2.00288415318058E-5 0.003928156545425413 0.0 0.10889681140842813 0.0 60-61 2.00288415318058E-5 0.003980732254446403 0.0 0.11685577231212946 0.0 62-63 2.00288415318058E-5 0.004043322384233296 0.0 0.1241537814452812 0.0 64-65 2.00288415318058E-5 0.004516503765422208 0.0 0.13112131469315813 0.0 66-67 2.00288415318058E-5 0.004546547027719916 0.0 0.13854700769107514 0.0 68-69 2.00288415318058E-5 0.004649194840570421 0.0 0.146193017945842 0.0 70-71 2.00288415318058E-5 0.004746835443037974 0.0 0.1531054718795065 0.0 72-73 2.00288415318058E-5 0.004789396731293062 0.0 0.15846569059445603 0.0 74-75 2.00288415318058E-5 0.004874519307803237 0.0 0.16280193478609198 0.0 76-77 2.00288415318058E-5 0.005057282486780964 0.0 0.1667401057522833 0.0 78-79 2.503605191475725E-5 0.005132390642525237 0.0 0.1694189633071623 0.0 80-81 2.503605191475725E-5 0.005139901458099663 0.0 0.1703052395449447 0.0 82-83 2.503605191475725E-5 0.005157426694439993 0.0 0.170843514661112 0.0 84-85 2.7539657106232974E-5 0.005194980772312129 0.0 0.17108386075949367 0.0 86-87 3.00432622977087E-5 0.00524755648133312 0.0 0.17117649415157826 0.0 88 3.00432622977087E-5 0.005447844896651178 0.0 0.1711865085723442 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 27795 0.0 52.255615 1 GTATCAA 50220 0.0 35.640644 1 TCAACGC 64220 0.0 27.371462 4 ATCAACG 64345 0.0 27.33722 3 TATCAAC 65925 0.0 26.854498 2 CAACGCA 65765 0.0 26.734604 5 AACGCAG 67385 0.0 26.152138 6 GTACATG 87085 0.0 23.252878 1 TACATGG 87930 0.0 22.641518 2 ACGCAGA 80140 0.0 21.964457 7 ACATGGG 89565 0.0 21.820175 3 TGGTATC 13460 0.0 21.660082 2 GTGGTAT 14080 0.0 21.600304 1 CGCAGAG 82420 0.0 21.351921 8 GCAGAGT 93245 0.0 18.694593 9 CATGGGG 57150 0.0 18.380653 4 GAGTACT 46350 0.0 18.16521 12-13 CAGAGTA 90225 0.0 17.434658 10-11 AGAGTAC 85040 0.0 16.972115 10-11 GTACTTT 51810 0.0 16.224678 14-15 >>END_MODULE