##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138720_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4169106 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.880662664849492 31.0 31.0 34.0 30.0 34.0 2 32.13105135729339 33.0 31.0 34.0 30.0 34.0 3 32.048206737847394 33.0 31.0 34.0 30.0 34.0 4 35.638144244833306 37.0 35.0 37.0 34.0 37.0 5 35.43828173234262 37.0 35.0 37.0 33.0 37.0 6 35.77413503038781 37.0 35.0 37.0 33.0 37.0 7 35.693573634251564 37.0 35.0 37.0 33.0 37.0 8 35.6723309505683 37.0 35.0 37.0 33.0 37.0 9 37.27046637816357 39.0 37.0 39.0 34.0 39.0 10-11 37.155407418281044 39.0 37.0 39.0 33.0 39.0 12-13 37.10610320294087 39.0 37.0 39.0 33.0 39.0 14-15 38.19700278668856 40.0 38.0 41.0 33.0 41.0 16-17 38.149399415606126 40.0 38.0 41.0 33.0 41.0 18-19 38.16762082806242 40.0 38.0 41.0 33.5 41.0 20-21 38.169398868169594 40.0 38.0 41.0 33.5 41.0 22-23 38.1059233334815 40.0 38.0 41.0 33.0 41.0 24-25 38.024302623653995 40.0 37.0 41.0 33.0 41.0 26-27 37.85854857464483 39.0 37.0 41.0 33.0 41.0 28-29 37.71353681927815 39.0 37.0 41.0 33.0 41.0 30-31 37.564024697587854 39.0 37.0 41.0 32.0 41.0 32-33 37.39668452306772 39.0 36.5 40.5 32.0 41.0 34-35 37.27305736877928 39.0 36.0 40.0 31.5 41.0 36-37 37.34264499326231 39.0 36.0 41.0 32.0 41.0 38-39 37.310179960387785 39.0 36.0 41.0 32.0 41.0 40-41 37.272783507127656 39.0 36.0 41.0 31.5 41.0 42-43 37.34150665019145 39.0 36.0 41.0 32.0 41.0 44-45 37.36467686424264 39.0 36.0 41.0 32.0 41.0 46-47 37.24481953615134 39.0 36.0 41.0 31.0 41.0 48-49 37.171432780394426 39.0 36.0 41.0 31.0 41.0 50-51 37.08271813459517 39.0 36.0 41.0 31.0 41.0 52-53 36.93828391085128 38.5 35.0 40.0 31.0 41.0 54-55 36.76898842142653 38.0 35.0 40.0 31.0 41.0 56-57 36.63420392196099 38.0 35.0 40.0 31.0 41.0 58-59 36.390366586438105 38.0 35.0 40.0 30.0 41.0 60-61 36.24056032660688 38.0 35.0 40.0 30.0 41.0 62-63 36.0000349980847 38.0 34.5 40.0 29.5 41.0 64-65 35.709659306147955 37.0 34.0 39.5 29.0 41.0 66-67 35.40542523602652 37.0 34.0 39.0 29.0 41.0 68-69 35.18467206997634 36.0 34.0 39.0 29.0 40.5 70-71 34.90146387879905 36.0 34.0 38.5 29.0 40.0 72-73 34.629419757832366 35.0 33.0 38.0 29.0 40.0 74-75 34.38031374896208 35.0 33.0 38.0 29.0 39.0 76-77 33.127244486475504 34.5 31.5 36.5 26.5 38.5 78-79 33.821751356587285 35.0 33.0 37.0 28.5 39.0 80-81 33.86117481518728 35.0 33.0 36.5 29.0 38.0 82-83 33.65699315724768 35.0 33.0 36.0 29.0 38.0 84-85 33.47791874136168 35.0 33.0 36.0 29.0 38.0 86-87 33.329406909796276 35.0 33.0 35.5 29.0 37.0 88-89 33.229457774727145 35.0 33.0 35.0 29.0 37.0 90-91 33.109892929199546 35.0 33.0 35.0 28.5 37.0 92-93 33.11440560797753 35.0 33.0 35.0 29.0 36.0 94-95 33.05166227688564 35.0 32.5 35.0 29.0 36.0 96-97 33.15162900513347 35.0 33.0 35.0 29.0 36.0 98-99 33.256247231192546 34.5 33.0 35.0 29.0 36.0 100 32.28234669256567 34.0 31.0 35.0 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 7.0 17 8.0 18 9.0 19 21.0 20 83.0 21 321.0 22 1174.0 23 3614.0 24 8628.0 25 17537.0 26 31029.0 27 47484.0 28 66574.0 29 86287.0 30 108736.0 31 134020.0 32 164765.0 33 205656.0 34 267029.0 35 358906.0 36 528017.0 37 938511.0 38 784167.0 39 401894.0 40 14629.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.734413564922555 19.734038904263887 13.452260508607841 24.07928702220572 2 15.81216692499543 21.252206108455866 39.360404844587784 23.57522212196092 3 18.777870230474257 25.772067297994123 30.135504098127676 25.31455837340394 4 13.112235572806256 17.26912196523667 37.63571854493505 31.982923917022017 5 13.364927636764332 37.94494551109998 35.01299799045647 13.677128861679218 6 31.106884785371253 36.93223439269714 18.091696397261188 13.869184424670422 7 27.434274878115357 32.40462103865912 22.313680678783413 17.847423404442104 8 25.737963966375528 35.54735715522705 20.665005878958222 18.04967299943921 9 26.37215268693096 15.897053229157523 20.704654666971766 37.02613941693975 10-11 25.22087469112083 26.251875102240145 28.102607609401154 20.424642597237874 12-13 25.66736130000053 23.903457959572147 28.367964259004207 22.061216481423116 14-15 22.77299977501172 25.172746867074142 26.1824357548117 25.871817603102436 16-17 22.27619062695935 28.203660449026724 26.8059027522927 22.71424617172123 18-19 22.26426621342149 27.381659976886795 28.626201294013065 21.727872515678648 20-21 23.313182695702903 26.570368031994107 28.406306131691668 21.710143140611326 22-23 22.906553474487676 26.45675251446541 28.301847410081134 22.33484660096578 24-25 22.539721126298527 26.58727620888806 28.511031756383094 22.36197090843032 26-27 22.506479401392028 26.78448698831517 28.37206488129031 22.336968729002496 28-29 22.48321389605833 26.90823276089955 28.370954873377265 22.237598469664853 30-31 22.79762554029842 26.7984283278542 28.126037646257707 22.277908485589673 32-33 22.5012326930738 27.048487054971226 28.101150167262134 22.34913008469284 34-35 22.637422228854163 27.020023814333122 28.138278416607676 22.20427554020504 36-37 22.686134599186104 26.914525387025108 28.082078702574176 22.31726131121461 38-39 22.42688836831479 27.16600874812552 28.13963537114972 22.267467512409976 40-41 22.780704906593456 26.976620740662582 27.916907644634065 22.3257667081099 42-43 22.602506358716507 27.058494154810457 27.740832260812837 22.598167225660198 44-45 22.65517205817551 27.260663135407366 27.562755013761368 22.521409792655756 46-47 22.801961019230113 27.081407550548892 27.337444137237267 22.77918729298373 48-49 22.718804904126362 27.24379142977787 27.295987764938275 22.74141590115749 50-51 22.587521699827672 27.3965731528798 27.240873618534284 22.77503152875824 52-53 22.850320392352618 27.34266298563529 26.93374786936807 22.873268752644023 54-55 22.896524013282704 27.133665803409286 27.107864396377984 22.861945786930026 56-57 22.805378665546446 27.36238685601078 27.038371355924962 22.79386312251782 58-59 22.772772396366044 27.44081282714638 27.03249960447181 22.753915172015766 60-61 22.827533865730054 27.329089798649704 27.090636215444945 22.7527401201753 62-63 22.891421013898118 27.461559297174183 26.943830052322088 22.70318963660561 64-65 22.756776743164433 27.463840852809362 27.064637029215348 22.714745374810853 66-67 22.906872643648978 27.474749879110625 26.797872229443993 22.820505247796405 68-69 22.778602562204377 27.42191771548978 26.962294851958525 22.83718487034732 70-71 22.780761257217602 27.110829992527552 27.04226571487946 23.066143035375383 72-73 22.905119151539598 27.206697019878995 26.96507762618239 22.923106202399023 74-75 22.5533076054698 27.44945073234648 26.959931481018586 23.037310181165136 76-77 22.75355441991266 27.340349645151136 26.881948497487507 23.024147437448693 78-79 22.715855971382386 27.428632645561517 26.806942906116447 23.048568476939643 80-81 22.756750906734673 27.36555359908248 26.785576409668593 23.092119084514252 82-83 22.783894859344194 27.289349107220367 26.980969184084618 22.945786849350814 84-85 22.930779665134736 27.315560909440613 26.7796718833303 22.97398754209436 86-87 22.621873629819923 27.408629635445227 26.940089184511724 23.029407550223134 88-89 22.686591688545967 27.396159264995333 26.92244763825912 22.99480140819958 90-91 22.726044536077325 27.35712954449996 27.01956423452112 22.89726168490159 92-93 22.835810563402088 27.408554413744486 26.878526158930143 22.877108863923283 94-95 22.566690107457585 27.552488495882997 26.967631744366138 22.913189652293276 96-97 22.572369336577445 27.56647285027506 27.12799446132561 22.733163351821887 98-99 23.715555789217955 29.6311316328882 27.194685273354267 19.458627304539576 100 30.64151630574988 41.27228857155865 28.08619512269147 0.0 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1935.0 1 1732.5 2 2036.5 3 2668.5 4 3258.0 5 4691.5 6 6097.5 7 7353.0 8 8316.5 9 8404.5 10 7640.0 11 6679.0 12 6813.5 13 8405.0 14 12510.0 15 18279.0 16 23102.0 17 25797.0 18 26233.5 19 25139.0 20 23262.5 21 21273.5 22 20207.0 23 20713.5 24 23693.5 25 29184.0 26 37080.5 27 44987.0 28 51322.5 29 58931.5 30 65890.0 31 71710.5 32 79781.5 33 89254.5 34 98595.0 35 107464.0 36 117232.0 37 124910.0 38 129289.5 39 133488.5 40 139451.5 41 145411.0 42 150110.0 43 155672.0 44 161717.5 45 167313.0 46 171213.5 47 175057.5 48 179443.0 49 182681.0 50 183956.0 51 182760.0 52 178998.5 53 175084.5 54 170549.5 55 163122.5 56 153419.5 57 141711.5 58 128584.5 59 113537.5 60 97396.5 61 80831.0 62 64880.5 63 50899.5 64 39226.5 65 30774.5 66 23997.5 67 18067.0 68 13311.0 69 9668.0 70 6739.5 71 4461.5 72 3006.5 73 2009.0 74 1322.5 75 897.5 76 608.5 77 402.0 78 270.0 79 180.0 80 120.5 81 82.5 82 58.5 83 31.5 84 17.0 85 11.5 86 9.0 87 8.5 88 8.0 89 5.0 90 2.0 91 1.5 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 1.679017036266288E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0014391574596568184 20-21 0.002830492366545883 22-23 0.0048100763542644025 24-25 9.958904520502745E-4 26-27 0.0015366170439401645 28-29 0.004085212731445325 30-31 0.00746387424672053 32-33 0.013043947716958895 34-35 2.0623679477934604E-4 36-37 8.669814745596498E-4 38-39 0.0015893781243908921 40-41 0.0026378303695898967 42-43 3.647373903366727E-4 44-45 2.546396943814388E-5 46-47 0.0035501997600581358 48-49 0.003218823049128268 50-51 7.551741352063772E-4 52-53 0.0011661705973541332 54-55 0.0011937417006125657 56-57 0.0014840813721816368 58-59 8.216891394003981E-4 60-61 3.8109519419199633E-4 62-63 0.0017018046422656481 64-65 4.346554877138831E-4 66-67 0.0016015473592247218 68-69 0.0013717226824037053 70-71 5.448787077293315E-4 72-73 5.068912635293886E-4 74-75 0.007292700318634907 76-77 0.00275203935606075 78-79 0.005524826385542942 80-81 1.3058855773263005E-4 82-83 0.004315605545021974 84-85 0.002547529562730891 86-87 6.521049346668078E-4 88-89 0.0034259888522517835 90-91 9.274176216838801E-4 92-93 9.108571438981225E-5 94-95 7.090027111890517E-4 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 141.0 20-21 468.0 22-23 890.0 24-25 1986.0 26-27 3007.0 28-29 6270.0 30-31 12679.0 32-33 16921.0 34-35 24091.0 36-37 34310.0 38-39 40000.0 40-41 41852.0 42-43 46136.0 44-45 53758.0 46-47 52848.0 48-49 48628.0 50-51 44308.0 52-53 43402.0 54-55 46757.0 56-57 48452.0 58-59 47808.0 60-61 46923.0 62-63 45068.0 64-65 47068.0 66-67 49525.0 68-69 49881.0 70-71 49278.0 72-73 46434.0 74-75 47497.0 76-77 46951.0 78-79 50118.0 80-81 51094.0 82-83 48758.0 84-85 49353.0 86-87 52163.0 88-89 56201.0 90-91 58354.0 92-93 62608.0 94-95 73070.0 96-97 153290.0 98-99 823335.0 100-101 1647425.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.52387609659826 #Duplication Level Percentage of deduplicated Percentage of total 1 92.0554446273175 81.49104774205914 2 5.844989792811557 10.348423044094634 3 1.2292541419468925 3.264550240588107 4 0.4304673195051226 1.5242654262202497 5 0.18425609875508758 0.8155532028118972 6 0.08762558369177358 0.46541737881735984 7 0.045444993370497073 0.2816076873638428 8 0.030368693581001333 0.21506835742240962 9 0.017920494273977513 0.14277524532294458 >10 0.07042101449119109 0.9700817177550041 >50 0.0022917265743029754 0.1339910153511419 >100 0.0014768949093131264 0.31552774738004935 >500 3.861877176944983E-5 0.031691194813217076 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 9.59438306437879E-5 0.0 0.0 0.0 3 0.0 9.59438306437879E-5 0.0 0.0 0.0 4 0.0 1.6790170362662884E-4 0.0 0.0 0.0 5 0.0 1.6790170362662884E-4 0.0 0.0 0.0 6 0.0 1.6790170362662884E-4 0.0 0.0 0.0 7 0.0 1.6790170362662884E-4 0.0 0.0 0.0 8 0.0 1.918876612875758E-4 0.0 0.0 0.0 9 0.0 3.837753225751516E-4 0.0 0.0 0.0 10-11 0.0 3.837753225751516E-4 0.0 2.3985957660946974E-5 0.0 12-13 2.3985957660946974E-5 3.837753225751516E-4 0.0 2.3985957660946974E-5 0.0 14-15 2.3985957660946974E-5 4.5573319555799254E-4 0.0 2.3985957660946974E-5 0.0 16-17 3.597893649142046E-5 4.6772617438846603E-4 0.0 3.597893649142046E-5 2.3985957660946974E-5 18-19 4.797191532189395E-5 5.037051108798865E-4 0.0 7.195787298284093E-5 2.3985957660946974E-5 20-21 4.797191532189395E-5 5.756629838627274E-4 0.0 7.195787298284093E-5 2.3985957660946974E-5 22-23 7.195787298284093E-5 6.596138356760419E-4 0.0 7.195787298284093E-5 2.3985957660946974E-5 24-25 8.395085181331442E-5 7.435646874893562E-4 0.0 7.195787298284093E-5 2.3985957660946974E-5 26-27 9.59438306437879E-5 7.675506451503032E-4 0.0 9.594383064378791E-5 7.195787298284093E-5 28-29 9.59438306437879E-5 7.675506451503032E-4 0.0 4.5573319555799254E-4 7.195787298284093E-5 30-31 1.5590872479615534E-4 8.275155393026707E-4 0.0 0.0018709046975538641 7.195787298284093E-5 32-33 1.918876612875758E-4 8.395085181331441E-4 0.0 0.00412558471768288 7.195787298284093E-5 34-35 2.3985957660946973E-4 0.0010553821370816669 0.0 0.007519597726706877 7.195787298284093E-5 36-37 2.878314919313637E-4 0.0012712557560301896 0.0 0.012772522454454264 9.59438306437879E-5 38-39 2.878314919313637E-4 0.0012952417136911367 0.0 0.021407467212395177 9.59438306437879E-5 40-41 3.118174495923107E-4 0.0014151715019958715 0.0 0.030666046869520708 9.59438306437879E-5 42-43 3.118174495923107E-4 0.0014631434173177655 0.0 0.03922903375447878 9.59438306437879E-5 44-45 3.3580340725325767E-4 0.0016670240574358148 0.0 0.04903929043780609 1.1992978830473487E-4 46-47 3.5978936491420466E-4 0.001846918739892917 0.0 0.059329266274352345 1.4391574596568185E-4 48-49 3.5978936491420466E-4 0.0018589117187233907 0.0 0.06912752997884919 1.4391574596568185E-4 50-51 3.5978936491420466E-4 0.0021587361894852275 0.0 0.07856600431843182 1.4391574596568185E-4 52-53 3.837753225751516E-4 0.002182722147146175 0.0 0.0879804927003535 1.5590872479615534E-4 54-55 3.957683014056251E-4 0.002182722147146175 0.0 0.09629162702987162 1.6790170362662884E-4 56-57 4.0776128023609857E-4 0.002182722147146175 0.0 0.10575408732711522 1.6790170362662884E-4 58-59 4.0776128023609857E-4 0.0021947151259766482 0.0 0.11467686357698748 1.6790170362662884E-4 60-61 4.3174723789704555E-4 0.002266672998959489 0.0 0.12304796280065798 1.6790170362662884E-4 62-63 4.3174723789704555E-4 0.002314644914281383 0.0 0.13121518138421043 1.918876612875758E-4 64-65 4.3174723789704555E-4 0.002638455342704167 0.0 0.13830303187302026 1.918876612875758E-4 66-67 4.3174723789704555E-4 0.002698420236856535 0.0 0.14573867874791382 1.918876612875758E-4 68-69 4.3174723789704555E-4 0.002734399173347955 0.0 0.15372600264900915 1.918876612875758E-4 70-71 4.5573319555799254E-4 0.002770378109839376 0.0 0.16038210589992197 1.918876612875758E-4 72-73 4.5573319555799254E-4 0.0027943640675003227 0.0 0.16594684807726165 2.1587361894852278E-4 74-75 4.5573319555799254E-4 0.0028543289616526904 0.0 0.17055215194816348 2.1587361894852278E-4 76-77 4.797191532189395E-4 0.002950272792296478 0.0 0.1749655681577777 2.2786659777899627E-4 78-79 4.797191532189395E-4 0.002998244707618372 0.0 0.17785587605592185 2.3985957660946976E-4 80-81 4.797191532189395E-4 0.002998244707618372 0.0 0.1788632862776816 2.518525554399432E-4 82-83 4.797191532189395E-4 0.0030102376864488455 0.0 0.17934300543090054 3.118174495923107E-4 84-85 4.91712132049413E-4 0.0030702025806012127 0.0 0.17964282990166236 3.118174495923107E-4 86-87 5.037051108798865E-4 0.00309418853826216 0.0 0.17978674564762803 3.118174495923107E-4 88 5.037051108798865E-4 0.0031661464112450006 0.0 0.17982272458411946 3.118174495923107E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5565 0.0 49.234554 1 GTATCAA 10080 0.0 36.175186 1 TCAACGC 12930 0.0 27.543901 4 TATCAAC 13160 0.0 27.339615 2 ATCAACG 13120 0.0 27.237885 3 CAACGCA 13250 0.0 26.878689 5 AACGCAG 13675 0.0 26.19131 6 GTGGTAT 2680 0.0 22.953838 1 TGGTATC 2575 0.0 22.789629 2 GTACATG 16580 0.0 22.55454 1 TACATGG 16400 0.0 22.357893 2 ACGCAGA 16060 0.0 22.200956 7 ACATGGG 16635 0.0 21.628452 3 CGCAGAG 16515 0.0 21.515789 8 CATGGGG 11930 0.0 19.506021 4 GCAGAGT 18645 0.0 18.927593 9 CTCACGA 840 1.6370905E-11 18.25935 94 GAGTACT 10030 0.0 18.076994 12-13 CAGAGTA 18085 0.0 17.152798 10-11 AGAGTAC 16890 0.0 17.10842 10-11 >>END_MODULE