##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138719_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6602773 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.738160618273564 31.0 31.0 34.0 30.0 34.0 2 32.009288824559015 31.0 31.0 34.0 30.0 34.0 3 31.915978937940164 31.0 31.0 34.0 30.0 34.0 4 35.77983174644956 37.0 35.0 37.0 35.0 37.0 5 35.55820047122626 37.0 35.0 37.0 33.0 37.0 6 35.64339149626983 37.0 35.0 37.0 33.0 37.0 7 35.55737203141771 37.0 35.0 37.0 33.0 37.0 8 35.542078457036155 37.0 35.0 37.0 33.0 37.0 9 37.2598845969716 39.0 37.0 39.0 33.0 39.0 10-11 37.13245147152568 39.0 37.0 39.0 33.0 39.0 12-13 37.092273428149056 39.0 37.0 39.0 33.0 39.0 14-15 38.264420115609 40.0 38.0 41.0 33.0 41.0 16-17 38.21769989669492 40.0 38.0 41.0 33.0 41.0 18-19 38.21758827692547 40.0 37.5 41.0 33.0 41.0 20-21 38.21398572710433 40.0 38.0 41.0 33.0 41.0 22-23 38.14583551742453 40.0 37.0 41.0 33.0 41.0 24-25 38.065308125898426 40.0 37.0 41.0 33.0 41.0 26-27 37.8976484011511 40.0 37.0 41.0 33.0 41.0 28-29 37.7443872688429 40.0 37.0 41.0 32.0 41.0 30-31 37.582258489993805 39.5 37.0 41.0 32.0 41.0 32-33 37.41303103998681 39.0 36.0 41.0 31.5 41.0 34-35 37.28408281108585 39.0 36.0 41.0 31.0 41.0 36-37 37.37211426165803 39.0 36.0 41.0 31.0 41.0 38-39 37.33985102581489 39.0 36.0 41.0 31.0 41.0 40-41 37.30091884097337 39.0 36.0 41.0 31.0 41.0 42-43 37.38749949694125 39.0 36.0 41.0 31.0 41.0 44-45 37.424546401915734 39.0 36.0 41.0 31.0 41.0 46-47 37.302967661017746 39.0 36.0 41.0 31.0 41.0 48-49 37.236185322051696 39.0 36.0 41.0 31.0 41.0 50-51 37.14057482754195 39.0 36.0 41.0 31.0 41.0 52-53 36.991082231828926 39.0 35.0 41.0 31.0 41.0 54-55 36.815467601346754 39.0 35.0 40.0 31.0 41.0 56-57 36.674329101314896 38.5 35.0 40.0 30.0 41.0 58-59 36.41330651218421 38.0 35.0 40.0 30.0 41.0 60-61 36.24795245563209 38.0 34.5 40.0 30.0 41.0 62-63 35.9849591527382 37.5 34.0 40.0 29.0 41.0 64-65 35.67909535190018 37.0 34.0 40.0 29.0 41.0 66-67 35.34765649347388 36.5 34.0 39.0 29.0 41.0 68-69 35.11112622646786 36.0 34.0 39.0 29.0 41.0 70-71 34.78987854681992 35.5 33.0 39.0 28.0 40.0 72-73 34.49426109767012 35.0 33.0 38.0 28.0 40.0 74-75 34.21120249522148 35.0 33.0 37.0 28.0 39.5 76-77 32.85518732678792 34.0 31.5 36.0 26.5 39.0 78-79 33.61425202747624 35.0 32.5 36.0 28.0 39.0 80-81 33.65341422865574 35.0 33.0 36.0 29.0 38.5 82-83 33.42738494362938 35.0 33.0 36.0 28.5 37.0 84-85 33.22700637739568 35.0 33.0 35.0 28.0 37.0 86-87 33.05815789932488 35.0 32.0 35.0 28.0 36.5 88-89 32.945626013633344 35.0 32.0 35.0 28.0 36.0 90-91 32.811405343864486 34.0 32.0 35.0 27.5 36.0 92-93 32.806848361852815 34.0 32.0 35.0 28.5 36.0 94-95 32.746318604705635 34.0 32.0 35.0 28.0 35.0 96-97 32.85026036627514 34.0 32.0 35.0 29.0 35.0 98-99 32.978037131337494 34.0 32.0 35.0 29.0 35.0 100 31.930357123369994 34.0 31.0 35.0 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 17.0 20 65.0 21 325.0 22 1506.0 23 5190.0 24 13271.0 25 28154.0 26 49881.0 27 79077.0 28 111386.0 29 147004.0 30 184230.0 31 225357.0 32 274531.0 33 340169.0 34 437051.0 35 579627.0 36 837143.0 37 1267012.0 38 1344977.0 39 654349.0 40 22448.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.18524550215493 19.87159031516001 13.553547880564725 24.389616302120338 2 15.850325310290087 21.127199132849185 39.26088326828743 23.7615922885733 3 18.75086895401109 25.337366188654876 30.165115650016975 25.746649207317056 4 13.241845509454892 17.218356590480997 37.47155929788894 32.06823860217518 5 13.542476774530943 37.67336844686316 35.17658414123884 13.607570637367058 6 31.511745141018782 36.810973207771944 17.895799234654895 13.781482416554377 7 27.617199622037592 32.10357224154154 22.34692908570384 17.932299050717024 8 25.626005922057292 35.856919509424294 20.54239938280477 17.97467518571364 9 26.069607421003266 16.045834076076822 20.731107975391552 37.153450527528356 10-11 25.10144601366729 26.17719100747519 28.250759188601513 20.470603790256003 12-13 25.522708413571088 23.736663368557423 28.55008797061477 22.19054024725672 14-15 22.595892665096923 25.122179726608806 26.104683592787453 26.17724401550682 16-17 22.372251779668936 28.142781828180375 26.80816075306542 22.676805639085277 18-19 22.37082219704383 27.4509769770167 28.42252436630493 21.755676459634543 20-21 23.147087343201274 26.605656189537697 28.319495129996515 21.927761337264513 22-23 22.851733599378676 26.515815402867975 28.17567263577121 22.456778361982135 24-25 22.59715182527672 26.654576540528947 28.284485950948167 22.463785683246172 26-27 22.57628010198977 26.792074570166474 28.21301127526627 22.418634052577485 28-29 22.523734896793698 26.958532459571234 28.156714912622398 22.36101773101267 30-31 22.824272148199963 26.774372211625902 28.013974681604974 22.387380958569167 32-33 22.578658409839104 26.918592291291755 28.010620799512896 22.492128499356248 34-35 22.714304625727806 26.988107982366667 28.01110768470275 22.286479707202776 36-37 22.692835782361197 26.95302886928018 27.9617936720038 22.39234167635483 38-39 22.53346528893512 27.079569631440613 28.028422193562168 22.358542886062104 40-41 22.850729385563582 26.89349525978671 27.84663580526069 22.409139549389018 42-43 22.628056564567995 27.042858864009578 27.66829900582892 22.660785565593503 44-45 22.711706991712795 27.145491871249188 27.50233286216511 22.64046827487291 46-47 22.82468668976287 27.067430748816424 27.328212024298367 22.77967053712234 48-49 22.70818732586638 27.24906938930276 27.258425883701232 22.784317401129627 50-51 22.703056260491167 27.318845912124807 27.19143543010795 22.786662397276075 52-53 22.873449366386154 27.24823079400566 27.00760118827987 22.87071865132831 54-55 22.833441622013112 27.089203675085177 27.154710422068394 22.92264428083331 56-57 22.80741498837712 27.24302798406396 27.108276247488565 22.841280780070356 58-59 22.805549010342016 27.361217244822374 27.089234331518174 22.743999413317432 60-61 22.918903226498045 27.203573411208527 27.13803404391867 22.739489318374766 62-63 22.95426513315856 27.3182190596098 27.028516164057237 22.698999643174403 64-65 22.794663720751114 27.28571462007213 27.09133568476063 22.828285974416122 66-67 22.867242088107215 27.301973846895766 26.92983834754252 22.900945717454494 68-69 22.799892200359356 27.269350756872594 27.030722897583313 22.900034145184733 70-71 22.795873366076446 27.022044150582047 27.119433071356543 23.06264941198496 72-73 22.893325926118262 27.116570333875366 26.99697824049728 22.993125499509087 74-75 22.661079476855733 27.268331688832077 27.077288601870485 22.9933002324417 76-77 22.829995830831717 27.118234306866242 27.015252036149224 23.03651782615282 78-79 22.74171613031909 27.095189022021355 27.017558831686973 23.14553601597259 80-81 22.808078984048567 27.161760663241573 26.957178143791015 23.072982208918837 82-83 22.874192366910577 27.120129972854745 27.11003407927242 22.895643580962258 84-85 22.93958928833897 27.109045894324087 27.012410059239116 22.93895475809783 86-87 22.725914868944752 27.15936797227204 27.08728179709344 23.027435361689765 88-89 22.809942945266258 27.05734133166183 27.131197895324792 23.001517827747115 90-91 22.838678694828452 27.062726934013824 27.152610817612715 22.945983553545005 92-93 22.88676678009944 27.003813154102673 27.13532366484633 22.97409640095156 94-95 22.71766347449972 27.06284008211517 27.235342628959046 22.98415381442607 96-97 22.684971335228855 27.214155865590424 27.298257071329758 22.802615727850966 98-99 23.833590270180974 29.190569734824678 27.461668587202514 19.51417140779183 100 30.831943205255907 40.72703353504459 28.441023259699506 0.0 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1755.0 1 1527.0 2 1973.0 3 2859.0 4 3710.0 5 5571.0 6 7372.5 7 9084.5 8 10561.0 9 10756.0 10 9616.0 11 8377.5 12 8805.5 13 11217.0 14 17022.5 15 24812.0 16 30924.0 17 34372.5 18 35349.5 19 34393.5 20 32462.5 21 30388.0 22 29409.0 23 31132.0 24 36057.0 25 43711.0 26 54599.0 27 66588.5 28 78116.0 29 91417.5 30 104447.5 31 115997.5 32 128484.5 33 142104.5 34 154698.0 35 166594.5 36 180630.0 37 193889.5 38 204109.5 39 212990.0 40 223010.0 41 233967.5 42 241951.0 43 249768.0 44 259541.5 45 267658.5 46 274173.0 47 280747.0 48 287206.0 49 292240.5 50 293577.5 51 291676.5 52 286010.5 53 277184.0 54 266393.5 55 251991.0 56 234869.0 57 216168.5 58 195794.5 59 171736.5 60 146421.5 61 121885.5 62 99487.0 63 79449.0 64 61487.5 65 47851.5 66 36888.5 67 27794.0 68 20708.0 69 15346.0 70 11020.5 71 7734.0 72 5413.5 73 3686.0 74 2484.0 75 1676.5 76 1131.5 77 753.5 78 517.0 79 360.5 80 235.0 81 152.5 82 113.0 83 81.0 84 52.5 85 36.0 86 26.5 87 18.0 88 11.5 89 6.0 90 4.5 91 4.0 92 3.5 93 2.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 1.0601606325100076E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0016659667082300118 20-21 0.0034532468244517743 22-23 0.004839662144624707 24-25 0.0010984934200622928 26-27 0.0017659926360380888 28-29 0.004369277034086201 30-31 0.007963706169030272 32-33 0.01451863522085245 34-35 1.3773632492549996E-4 36-37 8.005517032853641E-4 38-39 0.0017306455812466314 40-41 0.0026702508062434694 42-43 2.529771457284335E-4 44-45 1.5985348469007248E-5 46-47 0.003909016863644427 48-49 0.003662171480892846 50-51 8.535393583986076E-4 52-53 0.0010554186070803008 54-55 9.230988377169377E-4 56-57 0.0014571249553219775 58-59 6.595795995848467E-4 60-61 4.5690193425919237E-4 62-63 0.0018854835553816325 64-65 5.581172939304925E-4 66-67 0.0021343656122687713 68-69 0.0017109293333470207 70-71 6.753303420576321E-4 72-73 7.323464093626209E-4 74-75 0.008398594397356497 76-77 0.003246818973119175 78-79 0.006290993787494794 80-81 1.2092341960144446E-4 82-83 0.005303646564173868 84-85 0.003193353497575028 86-87 7.507818705846624E-4 88-89 0.0039618277892505705 90-91 8.677459595716058E-4 92-93 4.4876455119057237E-5 94-95 6.207570108756629E-4 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 173.0 20-21 656.0 22-23 1276.0 24-25 2890.0 26-27 4450.0 28-29 9270.0 30-31 18022.0 32-33 24334.0 34-35 34485.0 36-37 49847.0 38-39 58163.0 40-41 58933.0 42-43 65627.0 44-45 77123.0 46-47 76329.0 48-49 71075.0 50-51 65160.0 52-53 64058.0 54-55 69294.0 56-57 72333.0 58-59 71214.0 60-61 69366.0 62-63 67001.0 64-65 71233.0 66-67 75021.0 68-69 75799.0 70-71 74775.0 72-73 71527.0 74-75 72925.0 76-77 72410.0 78-79 76409.0 80-81 78952.0 82-83 76369.0 84-85 78073.0 86-87 81715.0 88-89 90527.0 90-91 94755.0 92-93 103236.0 94-95 120125.0 96-97 254156.0 98-99 1346258.0 100-101 2657429.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.20807233877123 #Duplication Level Percentage of deduplicated Percentage of total 1 90.36158795548086 76.99536723156852 2 6.621741267494887 11.284516178586621 3 1.6566701413001563 4.234850077241583 4 0.5955923521542277 2.0299710490710536 5 0.2832744379730242 1.2068634401265106 6 0.1450821390888426 0.7417301641527462 7 0.08782639237887478 0.5238462316550727 8 0.05990573147824469 0.4083561521044223 9 0.03922452119035386 0.3008021255137204 >10 0.1450253940257385 1.9368131396431072 >50 0.0032751995966297407 0.18681719335266075 >100 7.057531856352341E-4 0.0974297633339678 >500 8.871465254683322E-5 0.052637253649985574 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 4.5435455679000326E-5 2 0.0 4.5435455679000326E-5 0.0 0.0 4.5435455679000326E-5 3 0.0 4.5435455679000326E-5 0.0 0.0 4.5435455679000326E-5 4 0.0 1.968869746090014E-4 0.0 1.5145151893000107E-5 4.5435455679000326E-5 5 0.0 2.1203212650200152E-4 0.0 3.0290303786000214E-5 4.5435455679000326E-5 6 1.5145151893000107E-5 2.2717727839500162E-4 0.0 4.5435455679000326E-5 6.058060757200043E-5 7 1.5145151893000107E-5 2.423224302880017E-4 0.0 4.5435455679000326E-5 6.058060757200043E-5 8 1.5145151893000107E-5 2.574675821810018E-4 0.0 4.5435455679000326E-5 6.058060757200043E-5 9 1.5145151893000107E-5 4.5435455679000323E-4 0.0 9.087091135800065E-5 7.572575946500054E-5 10-11 1.5145151893000107E-5 4.5435455679000323E-4 0.0 1.0601606325100075E-4 7.572575946500054E-5 12-13 1.5145151893000107E-5 4.5435455679000323E-4 0.0 1.2116121514400086E-4 7.572575946500054E-5 14-15 1.5145151893000107E-5 6.285238035595045E-4 0.0 1.3630636703700096E-4 1.1358863919750081E-4 16-17 3.0290303786000214E-5 6.663866832920047E-4 0.0 1.5145151893000109E-4 1.6659667082300118E-4 18-19 3.0290303786000214E-5 7.421124427570053E-4 0.0 1.7416924676950124E-4 1.817418227160013E-4 20-21 3.0290303786000214E-5 8.178382022220058E-4 0.0 2.0445955055550146E-4 2.1960470244850158E-4 22-23 3.786287973250027E-5 8.784188097940063E-4 0.0 2.423224302880017E-4 2.650401581275019E-4 24-25 4.5435455679000326E-5 0.0010222977527775073 0.0 3.104756138065022E-4 2.8775788596700205E-4 26-27 4.5435455679000326E-5 0.0010753057844030077 0.0 3.7105622137850264E-4 3.0290303786000217E-4 28-29 4.5435455679000326E-5 0.001098023512242508 0.0 9.465719933125068E-4 3.4076591759250245E-4 30-31 4.5435455679000326E-5 0.0012419024552260088 0.0 0.0020445955055550143 3.634836454320026E-4 32-33 4.5435455679000326E-5 0.001249475031172509 0.0 0.004399666624916532 3.634836454320026E-4 34-35 6.058060757200043E-5 0.0014993700374070105 0.0 0.007814898376788055 3.786287973250027E-4 36-37 6.058060757200043E-5 0.0017341198917485124 0.0 0.01248717773577859 3.786287973250027E-4 38-39 6.058060757200043E-5 0.0018098456512135128 0.0 0.019840148979830143 3.8620137327150276E-4 40-41 6.058060757200043E-5 0.001999160049876014 0.0 0.027458160382009194 4.2406425300400304E-4 42-43 6.058060757200043E-5 0.0020597406574480144 0.0 0.03545480058151325 4.2406425300400304E-4 44-45 6.058060757200043E-5 0.0022944905117895163 0.0 0.044223843527560314 4.316368289505031E-4 46-47 7.572575946500054E-5 0.0024686597585590175 0.0 0.05384101497961538 4.4678198084350314E-4 48-49 7.572575946500054E-5 0.0024838049104520176 0.0 0.06298111414704095 4.5435455679000323E-4 50-51 9.087091135800065E-5 0.0027412724926330198 0.0 0.07142453632738852 4.5435455679000323E-4 52-53 9.087091135800065E-5 0.0027715627964190197 0.0 0.07953476516609007 4.770722846295034E-4 54-55 9.087091135800065E-5 0.00278670794831202 0.0 0.08847040478296012 5.149351643620036E-4 56-57 9.087091135800065E-5 0.0028169982520980202 0.0 0.09598240012188819 5.45225468148004E-4 58-59 9.087091135800065E-5 0.00284728855588402 0.0 0.10343381485324424 5.60370620041004E-4 60-61 9.844348730450071E-5 0.0029154417394025205 0.0 0.11071863291377729 5.67943195987504E-4 62-63 1.2116121514400086E-4 0.002976022346974521 0.0 0.11844266037920734 5.755157719340041E-4 64-65 1.2116121514400086E-4 0.0033016431126740233 0.0 0.12530341418673638 5.830883478805042E-4 66-67 1.2116121514400086E-4 0.0033319334164600236 0.0 0.13286841755728995 5.982334997735043E-4 68-69 1.2116121514400086E-4 0.0034682397834970248 0.0 0.13981246970023048 6.058060757200043E-4 70-71 1.2116121514400086E-4 0.0035515381189085253 0.0 0.14674137669127804 6.360963795060045E-4 72-73 1.3630636703700096E-4 0.0035591106948550254 0.0 0.1519285912146306 6.815318351850049E-4 74-75 1.3630636703700096E-4 0.003612118726480526 0.0 0.15640398359901211 6.815318351850049E-4 76-77 1.3630636703700096E-4 0.0037181347897315264 0.0 0.16037201339497814 6.89104411131505E-4 78-79 1.3630636703700096E-4 0.003755997669464027 0.0 0.16293911664084165 6.96676987078005E-4 80-81 1.3630636703700096E-4 0.003755997669464027 0.0 0.16371909196333118 7.11822138971005E-4 82-83 1.3630636703700096E-4 0.003755997669464027 0.0 0.16433247061499767 7.269672908640052E-4 84-85 1.3630636703700096E-4 0.0037711428213570266 0.0 0.16450663986176717 7.345398668105053E-4 86-87 1.3630636703700096E-4 0.0038468685808220274 0.0 0.16465809138069717 7.421124427570053E-4 88 1.3630636703700096E-4 0.004028610403538029 0.0 0.16467323653259017 7.421124427570053E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7870 0.0 49.345844 1 GTATCAA 13595 0.0 33.486782 1 TCAACGC 16855 0.0 26.40489 4 ATCAACG 17255 0.0 25.792782 3 TATCAAC 17580 0.0 25.594402 2 CAACGCA 17470 0.0 25.405302 5 AACGCAG 17660 0.0 25.224371 6 TACATGG 20905 0.0 21.347918 2 GTACATG 21215 0.0 21.343632 1 ACGCAGA 21035 0.0 21.177198 7 CGCAGAG 21745 0.0 20.466978 8 ACATGGG 21265 0.0 20.449383 3 GTGGTAT 4110 0.0 19.949986 1 TGGTATC 3845 0.0 18.99088 2 CATGGGG 16820 0.0 17.92284 4 GCAGAGT 24985 0.0 17.567959 9 GAGTACT 14120 0.0 17.03135 12-13 AGAGTAC 22355 0.0 16.915834 10-11 CAGAGTA 24180 0.0 16.895967 10-11 GAGTACA 15160 0.0 15.822186 1 >>END_MODULE