##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138718_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 13810415 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.763980734829474 31.0 31.0 34.0 30.0 34.0 2 32.036922641354366 33.0 31.0 34.0 30.0 34.0 3 31.94760229869993 31.0 31.0 34.0 30.0 34.0 4 35.799454614506516 37.0 35.0 37.0 35.0 37.0 5 35.57955296781451 37.0 35.0 37.0 33.0 37.0 6 35.66283243479649 37.0 35.0 37.0 33.0 37.0 7 35.58132221225792 37.0 35.0 37.0 33.0 37.0 8 35.56555939846847 37.0 35.0 37.0 33.0 37.0 9 37.29017049813492 39.0 37.0 39.0 34.0 39.0 10-11 37.164756127893334 39.0 37.0 39.0 33.0 39.0 12-13 37.12641014046283 39.0 37.0 39.0 33.0 39.0 14-15 38.31966074154904 40.0 38.0 41.0 33.0 41.0 16-17 38.27233587839323 40.0 38.0 41.0 33.0 41.0 18-19 38.27133630669317 40.0 38.0 41.0 33.5 41.0 20-21 38.26982846735207 40.0 38.0 41.0 33.0 41.0 22-23 38.20134773813088 40.0 38.0 41.0 33.0 41.0 24-25 38.12228864448526 40.0 37.0 41.0 33.0 41.0 26-27 37.95744165794071 40.0 37.0 41.0 33.0 41.0 28-29 37.809501484727804 40.0 37.0 41.0 32.5 41.0 30-31 37.65580809334296 40.0 37.0 41.0 32.0 41.0 32-33 37.497256907123614 39.0 36.5 41.0 32.0 41.0 34-35 37.37158336741962 39.0 36.0 41.0 31.0 41.0 36-37 37.46311038483124 39.0 36.0 41.0 32.0 41.0 38-39 37.43249161063724 39.0 36.0 41.0 31.0 41.0 40-41 37.400607015546385 39.0 36.0 41.0 31.0 41.0 42-43 37.48460453566052 39.5 36.0 41.0 31.5 41.0 44-45 37.524816513176155 40.0 36.0 41.0 32.0 41.0 46-47 37.41059489347444 39.5 36.0 41.0 31.0 41.0 48-49 37.351334731851104 39.0 36.0 41.0 31.0 41.0 50-51 37.26011915442116 39.0 36.0 41.0 31.0 41.0 52-53 37.112340064608375 39.0 35.5 41.0 31.0 41.0 54-55 36.9441702041537 39.0 35.0 41.0 31.0 41.0 56-57 36.8091339298552 39.0 35.0 40.0 31.0 41.0 58-59 36.553284192961016 38.0 35.0 40.0 30.0 41.0 60-61 36.398531593286506 38.0 35.0 40.0 30.0 41.0 62-63 36.1451918256942 38.0 34.5 40.0 29.5 41.0 64-65 35.844492930808514 37.0 34.0 40.0 29.0 41.0 66-67 35.517744216704784 37.0 34.0 39.5 29.0 41.0 68-69 35.28876387800946 36.0 34.0 39.0 29.0 41.0 70-71 34.96265401329727 36.0 34.0 39.0 29.0 40.5 72-73 34.667408427969406 35.5 33.0 38.5 28.5 40.0 74-75 34.383687090237615 35.0 33.0 37.5 28.0 40.0 76-77 33.01435504733506 34.0 31.5 36.0 26.5 39.0 78-79 33.762911191808456 35.0 32.5 36.5 28.5 39.0 80-81 33.784500451185444 35.0 33.0 36.0 29.0 39.0 82-83 33.54608940368004 35.0 33.0 36.0 29.0 37.5 84-85 33.33554142297221 35.0 33.0 35.5 29.0 37.0 86-87 33.157211771436366 35.0 33.0 35.0 29.0 37.0 88-89 33.035707492308035 35.0 32.0 35.0 29.0 36.0 90-91 32.896717727944676 35.0 32.0 35.0 28.0 36.0 92-93 32.88430073124099 34.0 32.0 35.0 29.0 36.0 94-95 32.819341881837744 34.0 32.0 35.0 29.0 35.0 96-97 32.916974564463786 34.0 32.0 35.0 29.0 35.0 98-99 33.038675397221056 34.0 32.0 35.0 29.0 35.0 100 31.9833968501751 34.0 31.0 35.0 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 5.0 19 30.0 20 150.0 21 784.0 22 3191.0 23 10592.0 24 27403.0 25 57089.0 26 101535.0 27 157818.0 28 223569.0 29 295421.0 30 369868.0 31 452426.0 32 551684.0 33 682209.0 34 880885.0 35 1172263.0 36 1699319.0 37 2619062.0 38 2937882.0 39 1512632.0 40 54596.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.9781447552445 20.07201811096915 13.436055324912394 24.513781808873954 2 15.671310384228136 21.29129356358951 39.389127698190094 23.648268353992258 3 18.628207230857626 25.4561654463902 30.322702572953197 25.592924749798975 4 13.122885879968123 17.383460236350608 37.78472261695249 31.70893126672877 5 13.43367306485721 37.61884056344433 35.44978192183218 13.49770444986628 6 31.252435209224345 37.15097627406562 18.065257271414364 13.53133124529567 7 27.316796779821605 32.184470922850615 22.659072880865637 17.83965941646214 8 25.243890208947377 36.08013951789283 20.850133757747326 17.825836515412462 9 25.77982631224333 16.104657245998762 20.963012335255673 37.152504106502235 10-11 24.753665983245256 26.349501445105016 28.614596302862733 20.282236268787 12-13 25.17595235190253 23.883159919524505 28.82847112125161 22.112416607321357 14-15 22.27009470750879 25.358821585013917 26.230410165081935 26.14067354239536 16-17 22.16802681164903 28.44506482969556 26.99557906116507 22.391329297490337 18-19 22.15337665753635 27.747039465526157 28.503555429159604 21.596028447777886 20-21 22.87541994256202 26.980934410354045 28.365726531680142 21.777919115403797 22-23 22.635572886878354 26.889768378762874 28.163623260084975 22.3110354742738 24-25 22.39179468813152 26.98405471656713 28.307592128694647 22.3165584666067 26-27 22.344082503007222 27.150086688021148 28.224742748835567 22.281088060136067 28-29 22.344371125122173 27.262558729502473 28.185072959676788 22.20799718569856 30-31 22.54864812791846 27.111944638590106 28.073417108101044 22.265990125390385 32-33 22.342055948391444 27.254975892546195 28.074055269734316 22.32891288932804 34-35 22.484596083558568 27.283574319804693 28.030298788236585 22.201530808400154 36-37 22.46536295142663 27.244034164796332 27.97941889145977 22.311183992317275 38-39 22.282966015354596 27.402266415645038 28.044516321036472 22.27025124796389 40-41 22.565748897233195 27.265175814678937 27.881484203205286 22.28759108488258 42-43 22.428281435839395 27.361720105735937 27.7115263068827 22.498472151541968 44-45 22.528684899719714 27.436322048525767 27.565876579106224 22.469116472648295 46-47 22.5813246566857 27.413450963677853 27.412814648594026 22.592409731042416 48-49 22.466985553966065 27.542308700722916 27.36892203187063 22.621783713440387 50-51 22.48856668909564 27.627681662275293 27.323445368880446 22.560306279748623 52-53 22.655910831104865 27.531426229632753 27.176607637572708 22.636055301689673 54-55 22.615530043135077 27.406989608585917 27.292093426335928 22.68538692194307 56-57 22.609883320537367 27.52682210747955 27.2449263710084 22.61836820097469 58-59 22.531429066187922 27.60327095540564 27.2354292998574 22.62987067854904 60-61 22.62346786334058 27.512238326207484 27.304304286195418 22.55998952425652 62-63 22.638001073575076 27.635210129357624 27.18707963823747 22.53970915882983 64-65 22.57472510651823 27.5807383844984 27.21075153208214 22.633784976901236 66-67 22.658815610341275 27.549399604118353 27.111035821737484 22.68074896380289 68-69 22.598330288056996 27.533715920468047 27.188265504453707 22.679688287021246 70-71 22.576784859391445 27.36123768998314 27.246442173936636 22.81553527668878 72-73 22.655578516342974 27.38649194348169 27.158453797884015 22.79947574229132 74-75 22.472886760317497 27.538774372337848 27.170038504794526 22.818300362550133 76-77 22.622435773813606 27.3922703386765 27.160863595121366 22.82443029238853 78-79 22.530600758121928 27.41000068604192 27.14394700511017 22.915451550725983 80-81 22.618243481382027 27.411296077602188 27.13609597520033 22.834364465815455 82-83 22.613822228981842 27.39027635462403 27.231291974219534 22.76460944217459 84-85 22.691115107322606 27.34775101207657 27.184539520406904 22.776594360193915 86-87 22.56529480650068 27.347077625610584 27.26629832508969 22.821329242799052 88-89 22.5670912712343 27.287525346676915 27.298502310569916 22.846881071518865 90-91 22.590082211719402 27.337560616963614 27.29618623442614 22.776170936890843 92-93 22.63452940031663 27.23747608362886 27.34785912542776 22.78013539062675 94-95 22.484481340464537 27.28344394431279 27.44063855093417 22.791436164288502 96-97 22.478933159270735 27.435334860994026 27.493417873630094 22.592314106105146 98-99 23.61128675730604 29.415991315882483 27.669441183857334 19.303280742954144 100 30.40822666072996 40.88499423505542 28.70677910421462 0.0 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2109.0 1 1993.0 2 3001.5 3 4338.5 4 5867.0 5 9706.5 6 13195.5 7 15775.0 8 17613.0 9 17561.0 10 15929.5 11 14209.0 12 15148.5 13 19775.0 14 30596.5 15 45218.5 16 57289.0 17 64621.0 18 67606.0 19 67305.5 20 64664.5 21 61967.0 22 61915.0 23 66562.5 24 77524.0 25 95105.5 26 118819.5 27 145599.5 28 173458.5 29 204737.5 30 235534.5 31 264411.0 32 293387.5 33 321234.5 34 348656.0 35 376747.5 36 408013.0 37 437325.5 38 461280.0 39 481961.0 40 502501.5 41 524071.0 42 541136.5 43 555074.5 44 568193.0 45 580414.5 46 590477.0 47 597790.0 48 602461.0 49 603483.0 50 601282.0 51 594103.5 52 577307.5 53 553671.5 54 528923.5 55 498809.5 56 463613.5 57 425073.0 58 381999.0 59 334436.5 60 286360.5 61 239302.0 62 193951.0 63 153389.5 64 118785.5 65 92742.0 66 72737.5 67 55825.5 68 42111.0 69 31541.5 70 23117.0 71 16589.5 72 11900.0 73 8342.0 74 5692.5 75 3858.5 76 2576.5 77 1688.5 78 1155.5 79 802.5 80 539.5 81 369.5 82 267.0 83 170.0 84 104.0 85 72.5 86 53.5 87 42.5 88 31.5 89 23.0 90 15.0 91 9.0 92 7.0 93 4.0 94 1.5 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 1.4481824043665594E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0014300801243119776 20-21 0.0032259759201716145 22-23 0.005131006323594138 24-25 0.0012387092736295747 26-27 0.0018190655242983488 28-29 0.004442482096343837 30-31 0.008402954090661954 32-33 0.014642562050407659 34-35 1.8665057519119606E-4 36-37 8.323178564441731E-4 38-39 0.0017866473406645802 40-41 0.0027406729855613023 42-43 2.72643383249919E-4 44-45 1.1490082985975357E-5 46-47 0.0041979513299144735 48-49 0.003469263231428146 50-51 7.752347868124214E-4 52-53 0.0012864320056564416 54-55 0.0010167700355755635 56-57 0.0015116039077143985 58-59 8.094912768761013E-4 60-61 4.860816027877245E-4 62-63 0.0018019574308315858 64-65 5.548753275335857E-4 66-67 0.002118567614459022 68-69 0.0017703658066286064 70-71 5.249422461708517E-4 72-73 8.493909155483669E-4 74-75 0.00888188729346119 76-77 0.0036214352088128525 78-79 0.006562335611572715 80-81 8.780639003198446E-5 82-83 0.004924008613097684 84-85 0.0029132359700974977 86-87 8.204521070568983E-4 88-89 0.00406982715825442 90-91 9.332881372998044E-4 92-93 5.449934908702418E-5 94-95 6.423360567078847E-4 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 401.0 20-21 1281.0 22-23 2653.0 24-25 5882.0 26-27 9116.0 28-29 18659.0 30-31 40122.0 32-33 53518.0 34-35 76530.0 36-37 110004.0 38-39 125009.0 40-41 129348.0 42-43 142868.0 44-45 165855.0 46-47 164009.0 48-49 152780.0 50-51 140610.0 52-53 140394.0 54-55 152525.0 56-57 157025.0 58-59 154535.0 60-61 149487.0 62-63 145940.0 64-65 155701.0 66-67 162988.0 68-69 163737.0 70-71 160662.0 72-73 154613.0 74-75 159196.0 76-77 157935.0 78-79 165534.0 80-81 167762.0 82-83 162026.0 84-85 167605.0 86-87 176864.0 88-89 191725.0 90-91 199491.0 92-93 215647.0 94-95 247795.0 96-97 523728.0 98-99 2756582.0 100-101 5482273.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.16125469064427 #Duplication Level Percentage of deduplicated Percentage of total 1 89.6330731713708 75.43631899880893 2 7.030221197512626 11.833444734708525 3 1.7689163725778432 4.466226640769233 4 0.70139792987718 2.3612211926353597 5 0.34115323753718124 1.4355942256452288 6 0.1625862980681856 0.8210080104555343 7 0.10537648517682194 0.6208032045159988 8 0.06531808435847422 0.43978015468788295 9 0.04379346480182101 0.33171416504746404 >10 0.143379086948223 1.8952359504395746 >50 0.003754291398219604 0.2043871441135864 >100 9.83999549178652E-4 0.12424884299802842 >500 3.092315592854311E-5 0.016369909191474935 >1k 1.545766760249417E-5 0.013646825983176571 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 7.240912021832798E-6 0.0 0.0 0.0 3 0.0 1.4481824043665595E-5 0.0 0.0 0.0 4 0.0 5.0686384152829585E-5 0.0 1.4481824043665595E-5 7.240912021832798E-6 5 0.0 5.0686384152829585E-5 0.0 1.4481824043665595E-5 7.240912021832798E-6 6 0.0 5.0686384152829585E-5 0.0 1.4481824043665595E-5 3.620456010916399E-5 7 0.0 5.0686384152829585E-5 0.0 1.4481824043665595E-5 3.620456010916399E-5 8 0.0 5.792729617466238E-5 0.0 2.896364808733119E-5 5.0686384152829585E-5 9 0.0 1.9550462458948554E-4 0.0 3.620456010916399E-5 7.240912021832799E-5 10-11 1.4481824043665595E-5 1.9550462458948554E-4 0.0 5.0686384152829585E-5 7.240912021832799E-5 12-13 2.896364808733119E-5 1.9550462458948554E-4 0.0 6.154775218557878E-5 7.240912021832799E-5 14-15 3.982501612008039E-5 3.258410409824759E-4 0.0 7.602957622924439E-5 9.051140027290997E-5 16-17 5.792729617466238E-5 3.548046890698071E-4 0.0 7.965003224016078E-5 1.0861368032749197E-4 18-19 6.516820819649518E-5 4.199728972663023E-4 0.0 9.413185628382637E-5 1.1585459234932476E-4 20-21 6.516820819649518E-5 4.706592814191319E-4 0.0 1.2309550437115756E-4 1.1585459234932476E-4 22-23 7.240912021832799E-5 4.99622929506463E-4 0.0 1.3757732841482317E-4 1.4119778442573956E-4 24-25 8.327048825107718E-5 5.503093136592927E-4 0.0 1.7378188852398716E-4 1.6654097650215435E-4 26-27 9.413185628382637E-5 5.828934177575403E-4 0.0 2.534319207641479E-4 1.7740234453490354E-4 28-29 9.413185628382637E-5 5.90134329779373E-4 0.0 7.059889221286978E-4 1.8102280054581996E-4 30-31 1.0861368032749196E-4 6.553025379758682E-4 0.0 0.002143309958462508 1.8464325655673635E-4 32-33 1.1585459234932476E-4 6.62543449997701E-4 0.0 0.004460401805449004 2.1722736065498394E-4 34-35 1.3395687240390675E-4 7.639162183033602E-4 0.0 0.0077948417915030075 2.2446827267681675E-4 36-37 1.5205915245848875E-4 8.689094426199358E-4 0.0 0.013316037208150515 2.3170918469864952E-4 38-39 1.5205915245848875E-4 8.97873090707267E-4 0.0 0.021248456328068346 2.3170918469864952E-4 40-41 1.5930006448032155E-4 0.0010064867710347588 0.0 0.029412584632684827 2.4619100874231513E-4 42-43 1.5930006448032155E-4 0.0010680345232203378 0.0 0.037283456000417076 2.498114647532315E-4 44-45 1.6292052049123794E-4 0.0012237141316897428 0.0 0.04653734156431939 2.606728327859807E-4 46-47 1.6654097650215435E-4 0.0013323278120172348 0.0 0.05657686608259056 2.7153420081872995E-4 48-49 1.6654097650215435E-4 0.0013395687240390676 0.0 0.06614211086343169 3.041183049169775E-4 50-51 1.6654097650215435E-4 0.001524211980595804 0.0 0.07569649427624006 3.041183049169775E-4 52-53 1.6654097650215435E-4 0.0015350733486285532 0.0 0.08525811860107027 3.403228650261415E-4 54-55 1.7378188852398716E-4 0.0015386938046394695 0.0 0.09426219270021936 3.837683371571383E-4 56-57 1.7378188852398716E-4 0.0015567960846940515 0.0 0.10329160999144486 3.910092491789711E-4 58-59 1.7378188852398716E-4 0.0015640369967158843 0.0 0.11146659966409408 3.910092491789711E-4 60-61 1.7378188852398716E-4 0.0016111029248577977 0.0 0.1191311050392041 3.982501612008039E-4 62-63 1.7378188852398716E-4 0.0016292052049123795 0.0 0.1267919899583032 4.127319852444695E-4 64-65 1.7378188852398716E-4 0.0017812643573708682 0.0 0.13418496113259448 4.127319852444695E-4 66-67 1.7378188852398716E-4 0.001795746181414534 0.0 0.14212100070852324 4.127319852444695E-4 68-69 1.7378188852398716E-4 0.0018319507415236979 0.0 0.14981084927570967 4.127319852444695E-4 70-71 1.7378188852398716E-4 0.001868155301632862 0.0 0.15633491100738103 4.2721380928813506E-4 72-73 1.7378188852398716E-4 0.001879016669665611 0.0 0.16175111319971197 4.851411054627975E-4 74-75 1.7378188852398716E-4 0.0019297030538184407 0.0 0.16628030366936836 4.887615614737139E-4 76-77 1.8826371256765273E-4 0.0019803894379712703 0.0 0.1707407054748174 4.923820174846303E-4 78-79 1.8826371256765273E-4 0.0019912508060040196 0.0 0.1734162224668846 4.923820174846303E-4 80-81 1.8826371256765273E-4 0.001994871262014936 0.0 0.17438288422179926 4.960024734955466E-4 82-83 1.8826371256765273E-4 0.0020057326300476847 0.0 0.1749838799196114 5.141047535501287E-4 84-85 1.8826371256765273E-4 0.002016593998080434 0.0 0.1751793845442009 5.141047535501287E-4 86-87 1.8826371256765273E-4 0.0020491781021786818 0.0 0.17535316643272486 5.141047535501287E-4 88 1.8826371256765273E-4 0.0021071053983533444 0.0 0.17536764825676854 5.141047535501287E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14765 0.0 45.459377 1 GTATCAA 25105 0.0 32.48483 1 TCAACGC 29510 0.0 26.7954 4 ATCAACG 30160 0.0 26.231392 3 CAACGCA 30705 0.0 25.805521 5 TATCAAC 31620 0.0 25.17449 2 AACGCAG 31555 0.0 25.09751 6 GTACATG 38255 0.0 21.955936 1 TACATGG 38745 0.0 21.436928 2 ACGCAGA 37735 0.0 20.976423 7 CGCAGAG 38495 0.0 20.593973 8 ACATGGG 40070 0.0 20.312088 3 CATGGGG 29795 0.0 18.638765 4 GTGGTAT 8100 0.0 18.319674 1 GAGTACT 25185 0.0 17.337275 12-13 GCAGAGT 46195 0.0 17.073267 9 TGGTATC 8220 0.0 16.420113 2 CAGAGTA 44050 0.0 16.38644 10-11 AGAGTAC 40085 0.0 16.15637 10-11 ATGGGGG 18980 0.0 15.379354 5 >>END_MODULE