##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138717_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6427710 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.781684612404728 31.0 31.0 34.0 30.0 34.0 2 32.051940737836645 33.0 31.0 34.0 30.0 34.0 3 31.963203224787677 31.0 31.0 34.0 30.0 34.0 4 35.810650760535246 37.0 35.0 37.0 35.0 37.0 5 35.593603631775544 37.0 35.0 37.0 33.0 37.0 6 35.6751446471605 37.0 35.0 37.0 33.0 37.0 7 35.592260385113825 37.0 35.0 37.0 33.0 37.0 8 35.577218325033336 37.0 35.0 37.0 33.0 37.0 9 37.30456072224789 39.0 37.0 39.0 34.0 39.0 10-11 37.180113368524715 39.0 37.0 39.0 33.0 39.0 12-13 37.144547124870286 39.0 37.0 39.0 33.0 39.0 14-15 38.34329146772334 40.0 38.0 41.0 33.0 41.0 16-17 38.29703510270376 40.0 38.0 41.0 33.0 41.0 18-19 38.29141537188205 40.0 38.0 41.0 33.5 41.0 20-21 38.288585256111205 40.0 38.0 41.0 33.5 41.0 22-23 38.222444381208874 40.0 38.0 41.0 33.0 41.0 24-25 38.143546349098784 40.0 37.0 41.0 33.0 41.0 26-27 37.97727398390056 40.0 37.0 41.0 33.0 41.0 28-29 37.83146069809403 40.0 37.0 41.0 33.0 41.0 30-31 37.67997223591916 40.0 37.0 41.0 32.0 41.0 32-33 37.52255363726784 39.5 36.5 41.0 32.0 41.0 34-35 37.395631959364124 39.0 36.0 41.0 31.5 41.0 36-37 37.48758659595771 39.0 36.0 41.0 32.0 41.0 38-39 37.45660360971755 39.0 36.0 41.0 31.0 41.0 40-41 37.423940041866615 39.0 36.0 41.0 31.0 41.0 42-43 37.50877130105968 39.5 36.5 41.0 32.0 41.0 44-45 37.54908255687821 40.0 36.5 41.0 32.0 41.0 46-47 37.43684545182981 40.0 36.0 41.0 31.0 41.0 48-49 37.37614773655129 39.0 36.0 41.0 31.0 41.0 50-51 37.281019587806256 39.0 36.0 41.0 31.0 41.0 52-53 37.129163629542234 39.0 35.5 41.0 31.0 41.0 54-55 36.95926236116466 39.0 35.0 41.0 31.0 41.0 56-57 36.821627337838414 39.0 35.0 40.0 31.0 41.0 58-59 36.566299334499504 38.0 35.0 40.0 30.0 41.0 60-61 36.410246649296326 38.0 35.0 40.0 30.0 41.0 62-63 36.15460613593302 38.0 34.5 40.0 29.5 41.0 64-65 35.851893111911316 37.0 34.0 40.0 29.0 41.0 66-67 35.52107588489832 37.0 34.0 39.5 29.0 41.0 68-69 35.29424229231361 36.0 34.0 39.0 29.0 41.0 70-71 34.96620319261531 36.0 34.0 39.0 29.0 40.5 72-73 34.670510045501246 35.0 33.0 38.5 29.0 40.0 74-75 34.386559529443545 35.0 33.0 37.5 28.5 40.0 76-77 33.01932267941172 34.0 31.5 36.0 26.5 39.0 78-79 33.764497608961626 35.0 32.5 36.0 28.5 39.0 80-81 33.784916619026035 35.0 33.0 36.0 29.0 39.0 82-83 33.551825510590106 35.0 33.0 36.0 29.0 37.5 84-85 33.34551964289634 35.0 33.0 35.5 29.0 37.0 86-87 33.172564308210056 35.0 33.0 35.0 29.0 37.0 88-89 33.04871470939854 35.0 32.5 35.0 29.0 36.0 90-91 32.90877916197151 35.0 32.0 35.0 28.5 36.0 92-93 32.89776878256822 34.0 32.0 35.0 29.0 36.0 94-95 32.834606807919045 34.0 32.0 35.0 29.0 35.0 96-97 32.933640448038815 34.0 32.0 35.0 29.0 35.0 98-99 33.05495485649824 34.0 32.0 35.0 29.0 35.0 100 32.00114009246033 34.0 31.0 35.0 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 0.0 15 0.0 16 0.0 17 3.0 18 2.0 19 14.0 20 55.0 21 332.0 22 1401.0 23 4929.0 24 12538.0 25 26552.0 26 47111.0 27 73527.0 28 104051.0 29 136586.0 30 171039.0 31 209318.0 32 253879.0 33 315773.0 34 407204.0 35 542407.0 36 789549.0 37 1222176.0 38 1369739.0 39 713554.0 40 25970.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.94496951480387 20.05026673574259 13.470831758122257 24.533931991331283 2 15.626856220955831 21.201905499781414 39.502902277794114 23.66833600146864 3 18.715337501960267 25.374333198085285 30.239995793204905 25.670333506749543 4 13.140169671624887 17.26677152516215 37.75076971425282 31.84228908896014 5 13.51017703038874 37.57023885645121 35.396945412907556 13.522638700252502 6 31.421657168727275 37.03709408171807 18.013662719693325 13.527586029861336 7 27.366869382719507 32.09161583207705 22.652126496061584 17.889388289141856 8 25.19508503028295 36.208198565274415 20.782533748411176 17.814182656031463 9 25.689662414763582 16.228796881004275 20.957370509870547 37.1241701943616 10-11 24.83209416728508 26.359675529854332 28.524186685460297 20.28404361740029 12-13 25.185874907237572 23.817378195344844 28.818093846797694 22.178653050619896 14-15 22.311141915238863 25.34075899503867 26.137753570089505 26.210345519632966 16-17 22.221382109647138 28.426858087872663 26.913667542561814 22.438092259918385 18-19 22.232541416625644 27.692897455540255 28.425354548469944 21.649206579364154 20-21 22.907771718739074 26.951230317988934 28.26157901382098 21.87941894945101 22-23 22.670924861054583 26.846441477823856 28.081815281120893 22.40081838000067 24-25 22.44856809966167 26.97017228375349 28.189966907897745 22.39129270868709 26-27 22.449087792950824 27.11041450849005 28.08788653128071 22.352611167278415 28-29 22.40911009761754 27.219091480425927 28.091241536205818 22.28055688575072 30-31 22.599994895362343 27.08566791803138 27.972930434325832 22.34140675228044 32-33 22.402079565571793 27.225743432086496 27.95866643418408 22.413510568157626 34-35 22.57298443774311 27.252227110212473 27.896650451396642 22.278138000647772 36-37 22.565315009409847 27.188563927678764 27.85496991941569 22.391151143495694 38-39 22.37477551716027 27.326674673101603 27.975923567163573 22.322626242574554 40-41 22.66530756451165 27.20126671284521 27.79641751431362 22.337008208329518 42-43 22.500539445043014 27.286761014174576 27.64992363182463 22.56277590895778 44-45 22.587139802217873 27.39098055195602 27.52535118887909 22.496528456947026 46-47 22.683355848226018 27.356702719933452 27.32118490045263 22.638756531387905 48-49 22.52746636208529 27.427147626491728 27.348254682386084 22.6971313290369 50-51 22.557289135786387 27.542256747205013 27.312769878171206 22.587684238837397 52-53 22.735048636109042 27.49915207209415 27.085613533015678 22.680185758781125 54-55 22.691603343179807 27.314402661777592 27.262583409703296 22.731410585339308 56-57 22.62495664204913 27.470466208024114 27.231506883704515 22.67307026622224 58-59 22.626019818476877 27.557860002772166 27.172774325305394 22.643345853445563 60-61 22.6832950989556 27.46738710670393 27.24644276987524 22.602875024465224 62-63 22.727851282914997 27.57523840625002 27.123248698295722 22.57366161253927 64-65 22.64608642025714 27.558627596265993 27.112853908604073 22.682432074872793 66-67 22.73197964632717 27.52575063573407 27.023206992334607 22.719062725604154 68-69 22.616742268104343 27.492975220958098 27.194337825806137 22.695944685131415 70-71 22.667837410024333 27.277023217144915 27.170606410838737 22.884532961992015 72-73 22.738611740889773 27.327441603990387 27.099451502788654 22.83449515233119 74-75 22.520312783924695 27.457202876238284 27.177306791428794 22.845177548408223 76-77 22.713764728993212 27.351707594171486 27.103262289572967 22.831265387262334 78-79 22.617843400366443 27.359603576890894 27.072697863952104 22.94985515879056 80-81 22.692863706746692 27.36721711064909 27.08135923565375 22.85855994695046 82-83 22.683802975550833 27.339054354156755 27.201475099312074 22.775667570980342 84-85 22.7592826148705 27.29565431365194 27.15447422851238 22.790588842965175 86-87 22.588295362590028 27.309752796681718 27.277355961895267 22.824595878832984 88-89 22.65934454407195 27.26846735077587 27.232323020150993 22.839865085001186 90-91 22.64848644937064 27.272959425349296 27.251036548502398 22.827517576777666 92-93 22.71385664621222 27.185940129140988 27.314994941801313 22.78520828284548 94-95 22.564036664583398 27.25621275977329 27.370983472492377 22.80876710315094 96-97 22.562059515620014 27.36839137219161 27.460528400872786 22.60902071131559 98-99 23.685557284985688 29.398040181347113 27.593843083883968 19.322559449783228 100 30.560470231718927 40.85947407106784 28.58005569721323 0.0 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1048.0 1 963.5 2 1350.5 3 1912.0 4 2529.0 5 4164.0 6 5651.5 7 6734.0 8 7489.0 9 7512.0 10 6925.0 11 6207.5 12 6594.0 13 8560.5 14 13287.5 15 19620.5 16 24832.5 17 28173.0 18 29572.5 19 29510.0 20 28767.5 21 27887.5 22 27983.0 23 30465.5 24 35794.5 25 44273.5 26 55705.5 27 68112.5 28 80475.5 29 93934.5 30 107279.5 31 120220.5 32 133670.5 33 147314.0 34 161024.0 35 174134.0 36 188587.0 37 202306.0 38 213019.5 39 222010.5 40 232086.0 41 242091.0 42 249503.0 43 257243.0 44 264906.0 45 271469.5 46 276739.5 47 280337.5 48 281802.0 49 281492.5 50 280671.0 51 276959.5 52 267811.0 53 257675.0 54 247250.5 55 233436.5 56 217675.5 57 200679.5 58 181541.5 59 158947.0 60 135388.0 61 112548.0 62 91504.0 63 72578.5 64 56115.5 65 44070.0 66 34366.0 67 26359.0 68 20182.0 69 15204.5 70 11053.0 71 7767.5 72 5446.0 73 3748.0 74 2527.0 75 1706.0 76 1167.0 77 759.5 78 487.5 79 338.5 80 245.0 81 186.0 82 148.0 83 106.0 84 68.0 85 42.0 86 28.0 87 23.0 88 16.5 89 10.5 90 6.5 91 3.5 92 1.5 93 1.5 94 2.0 95 2.0 96 2.0 97 2.0 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 2.1780696391094184E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0015246487473765929 20-21 0.002886078769568936 22-23 0.005453805643794137 24-25 0.0010894656762282324 26-27 0.0016115509745640423 28-29 0.004222855841051083 30-31 0.008975239188173225 32-33 0.014685898304538092 34-35 1.8080989152742928E-4 36-37 8.543187911135974E-4 38-39 0.0021542228912192437 40-41 0.002609253427363096 42-43 3.6599982041608814E-4 44-45 4.112713689406053E-5 46-47 0.0037407704404153175 48-49 0.003619275807376911 50-51 7.852646790081253E-4 52-53 0.001061516797036176 54-55 0.0010650069784145782 56-57 0.0013170743306367488 58-59 5.820081232216854E-4 60-61 4.081299855911976E-4 62-63 0.0017540030067835837 64-65 5.115150405882535E-4 66-67 0.0022156270912926986 68-69 0.0019989100679839835 70-71 5.045724452017344E-4 72-73 9.744754369193505E-4 74-75 0.008675486778168802 76-77 0.003950978287550781 78-79 0.006581388327414197 80-81 1.1490710804924292E-4 82-83 0.004755966880635635 84-85 0.002686092835251894 86-87 7.240689515503523E-4 88-89 0.0035752000883074423 90-91 0.001014621031064732 92-93 4.658175511435646E-5 94-95 8.352097712861562E-4 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 194.0 20-21 595.0 22-23 1181.0 24-25 2555.0 26-27 4008.0 28-29 8394.0 30-31 18133.0 32-33 24703.0 34-35 34982.0 36-37 51592.0 38-39 58352.0 40-41 59756.0 42-43 66021.0 44-45 76362.0 46-47 76159.0 48-49 70340.0 50-51 65135.0 52-53 64243.0 54-55 70257.0 56-57 72739.0 58-59 71578.0 60-61 68863.0 62-63 67994.0 64-65 71462.0 66-67 75511.0 68-69 74956.0 70-71 74261.0 72-73 71099.0 74-75 73098.0 76-77 72162.0 78-79 75507.0 80-81 76867.0 82-83 74715.0 84-85 76540.0 86-87 80648.0 88-89 87899.0 90-91 91465.0 92-93 99536.0 94-95 114843.0 96-97 244078.0 98-99 1288960.0 100-101 2569967.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.52672512465952 #Duplication Level Percentage of deduplicated Percentage of total 1 91.25051689307239 79.86858909583047 2 6.310222470846681 11.046262153624946 3 1.408062581127424 3.6972931948997596 4 0.49510669196322726 1.7334026933937947 5 0.21649626680445921 0.9474604617554427 6 0.10637173881639989 0.5586221966649064 7 0.06356632653322651 0.3894626672760648 8 0.03965655729900386 0.2776806872080177 9 0.02432074182572259 0.1915843396147048 >10 0.08366683586481737 1.1286087194465906 >50 0.0016293186298497351 0.09265595251030896 >100 3.572932507498911E-4 0.053332244205920525 >500 2.6283966093011277E-5 0.015045593569174004 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 4.6672920838058965E-5 2 0.0 3.1115280558705977E-5 0.0 3.1115280558705977E-5 4.6672920838058965E-5 3 0.0 3.1115280558705977E-5 0.0 3.1115280558705977E-5 4.6672920838058965E-5 4 0.0 1.0890348195547092E-4 0.0 3.1115280558705977E-5 4.6672920838058965E-5 5 0.0 1.244611222348239E-4 0.0 3.1115280558705977E-5 4.6672920838058965E-5 6 0.0 1.244611222348239E-4 0.0 3.1115280558705977E-5 4.6672920838058965E-5 7 0.0 1.244611222348239E-4 0.0 3.1115280558705977E-5 4.6672920838058965E-5 8 0.0 1.400187625141769E-4 0.0 3.1115280558705977E-5 4.6672920838058965E-5 9 0.0 3.578257264251187E-4 0.0 3.1115280558705977E-5 6.223056111741195E-5 10-11 1.5557640279352988E-5 3.578257264251187E-4 0.0 3.1115280558705977E-5 6.223056111741195E-5 12-13 1.5557640279352988E-5 3.578257264251187E-4 0.0 3.1115280558705977E-5 6.223056111741195E-5 14-15 2.3336460419029482E-5 5.600750500567076E-4 0.0 3.1115280558705977E-5 1.0112466181579443E-4 16-17 3.1115280558705977E-5 5.9896915075509E-4 0.0 3.1115280558705977E-5 1.0890348195547092E-4 18-19 3.1115280558705977E-5 6.61199711872502E-4 0.0 3.1115280558705977E-5 1.322399423745004E-4 20-21 3.1115280558705977E-5 7.467667334089434E-4 0.0 3.1115280558705977E-5 1.5557640279352988E-4 22-23 4.6672920838058965E-5 8.089972945263554E-4 0.0 7.000938125708845E-5 1.8669168335223586E-4 24-25 9.334584167611793E-5 8.556702153644145E-4 0.0 9.334584167611793E-5 2.1780696391094184E-4 26-27 1.0890348195547092E-4 8.867854959231203E-4 0.0 1.7891286321255936E-4 2.1780696391094184E-4 28-29 1.0890348195547092E-4 8.867854959231203E-4 0.0 7.623243736882964E-4 2.1780696391094184E-4 30-31 1.400187625141769E-4 9.645736973198854E-4 0.0 0.002030272056455565 2.1780696391094184E-4 32-33 1.5557640279352988E-4 9.645736973198854E-4 0.0 0.004776195565761367 2.3336460419029484E-4 34-35 1.5557640279352988E-4 0.0011434865605324447 0.0 0.008307779909174497 2.489222444696478E-4 36-37 1.5557640279352988E-4 0.0013301782438846807 0.0 0.013986318611138337 2.489222444696478E-4 38-39 1.5557640279352988E-4 0.0014468605459798279 0.0 0.022480790203665068 2.567010646093243E-4 40-41 1.7113404307288288E-4 0.0014935334668178869 0.0 0.031231962860801127 2.800375250283538E-4 42-43 1.7113404307288288E-4 0.0015402063876559459 0.0 0.039687540352629475 2.800375250283538E-4 44-45 1.7113404307288288E-4 0.001711340430728829 0.0 0.04908435508135868 2.800375250283538E-4 46-47 1.7113404307288288E-4 0.0018202439126842997 0.0 0.05936795530601101 2.800375250283538E-4 48-49 1.7113404307288288E-4 0.0018202439126842997 0.0 0.0694648638473111 3.2671044586641277E-4 50-51 1.7113404307288288E-4 0.0019524838550588 0.0 0.07864387161212935 3.2671044586641277E-4 52-53 1.7113404307288288E-4 0.0019602626751984765 0.0 0.08821959920407113 3.422680861457657E-4 54-55 1.7113404307288288E-4 0.001983599135617506 0.0 0.09800535493978416 3.578257264251187E-4 56-57 1.7113404307288288E-4 0.0020536085168745945 0.0 0.10680320051775827 3.578257264251187E-4 58-59 1.7113404307288288E-4 0.0020536085168745945 0.0 0.11555437317489432 3.578257264251187E-4 60-61 1.7113404307288288E-4 0.00210806025785233 0.0 0.124002171846583 3.733833667044717E-4 62-63 1.7113404307288288E-4 0.0021313967182713593 0.0 0.13218549063352267 3.889410069838247E-4 64-65 1.7113404307288288E-4 0.0022714154807855365 0.0 0.1399798684134785 3.889410069838247E-4 66-67 1.7113404307288288E-4 0.0022791943009252127 0.0 0.1472919593447744 3.889410069838247E-4 68-69 1.7113404307288288E-4 0.0023180884016235953 0.0 0.15453404089481323 3.889410069838247E-4 70-71 1.7891286321255936E-4 0.0023492036821823013 0.0 0.16147274845940468 3.889410069838247E-4 72-73 1.8669168335223586E-4 0.0023803189627410073 0.0 0.16692570137731788 4.200562875425307E-4 74-75 1.8669168335223586E-4 0.0024114342432997133 0.0 0.17125072537497804 4.200562875425307E-4 76-77 1.8669168335223586E-4 0.002442549523858419 0.0 0.17556797055249848 4.200562875425307E-4 78-79 1.8669168335223586E-4 0.0024658859842774487 0.0 0.17822832704026784 4.200562875425307E-4 80-81 1.8669168335223586E-4 0.0024736648044171253 0.0 0.1790684396153529 4.4339274796156023E-4 82-83 1.8669168335223586E-4 0.0024736648044171253 0.0 0.17962073584526994 4.667292083805897E-4 84-85 1.8669168335223586E-4 0.0024970012648361547 0.0 0.1798618792695999 4.667292083805897E-4 86-87 1.8669168335223586E-4 0.002543674185674214 0.0 0.18001745567239344 4.667292083805897E-4 88 1.8669168335223586E-4 0.002644798847490008 0.0 0.18004857095295215 4.667292083805897E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6735 0.0 44.875935 1 GTATCAA 11440 0.0 32.606606 1 TCAACGC 13275 0.0 27.118835 4 ATCAACG 13615 0.0 26.501364 3 CAACGCA 13720 0.0 26.179955 5 AACGCAG 13985 0.0 25.74205 6 TATCAAC 14300 0.0 25.402573 2 GTACATG 17390 0.0 21.754326 1 TACATGG 17240 0.0 21.636866 2 ACGCAGA 16940 0.0 21.275639 7 CGCAGAG 17205 0.0 20.971582 8 ACATGGG 17830 0.0 20.510235 3 CATGGGG 14150 0.0 18.139912 4 GCAGAGT 20620 0.0 17.340534 9 GAGTACT 11495 0.0 17.021984 12-13 GTGGTAT 3830 0.0 16.887318 1 CAGAGTA 19765 0.0 16.464762 10-11 AGAGTAC 17945 0.0 16.24183 10-11 GTACTTT 12825 0.0 15.290068 14-15 TGGTATC 3880 0.0 15.097083 2 >>END_MODULE