##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138716_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10435464 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.69469455311235 31.0 31.0 34.0 30.0 34.0 2 31.972226726094785 31.0 31.0 34.0 30.0 34.0 3 31.87638958842654 31.0 31.0 34.0 30.0 34.0 4 35.74525540982174 37.0 35.0 37.0 35.0 37.0 5 35.516802798610584 37.0 35.0 37.0 33.0 37.0 6 35.60391516850616 37.0 35.0 37.0 33.0 37.0 7 35.518374554308274 37.0 35.0 37.0 33.0 37.0 8 35.50241925035628 37.0 35.0 37.0 33.0 37.0 9 37.216237533855704 39.0 37.0 39.0 33.0 39.0 10-11 37.086513642325826 39.0 37.0 39.0 33.0 39.0 12-13 37.043812761943315 39.0 37.0 39.0 33.0 39.0 14-15 38.21192124279285 40.0 37.5 41.0 33.0 41.0 16-17 38.1609562833047 40.0 37.0 41.0 33.0 41.0 18-19 38.16028760196959 40.0 37.5 41.0 33.0 41.0 20-21 38.16044246639339 40.0 37.5 41.0 33.0 41.0 22-23 38.09178508565725 40.0 37.0 41.0 33.0 41.0 24-25 38.00739553014013 40.0 37.0 41.0 33.0 41.0 26-27 37.832201136235085 40.0 37.0 41.0 32.5 41.0 28-29 37.67782998583359 40.0 37.0 41.0 32.0 41.0 30-31 37.519976855569254 39.0 36.5 41.0 32.0 41.0 32-33 37.354974717737534 39.0 36.0 41.0 31.5 41.0 34-35 37.22375255790142 39.0 36.0 40.5 31.0 41.0 36-37 37.316806330221524 39.0 36.0 41.0 31.0 41.0 38-39 37.28696584211414 39.0 36.0 41.0 31.0 41.0 40-41 37.2545452423076 39.0 36.0 41.0 31.0 41.0 42-43 37.33964091229977 39.0 36.0 41.0 31.0 41.0 44-45 37.38133086632909 39.0 36.0 41.0 31.0 41.0 46-47 37.2661665922563 39.0 36.0 41.0 31.0 41.0 48-49 37.20741597435221 39.0 36.0 41.0 31.0 41.0 50-51 37.11674274652159 39.0 36.0 41.0 31.0 41.0 52-53 36.96774540945481 39.0 35.0 41.0 31.0 41.0 54-55 36.79677668746732 39.0 35.0 40.0 30.0 41.0 56-57 36.66381481999533 39.0 35.0 40.0 30.0 41.0 58-59 36.40713065568981 38.0 35.0 40.0 30.0 41.0 60-61 36.25571733232185 38.0 34.5 40.0 30.0 41.0 62-63 36.00364412236164 38.0 34.0 40.0 29.0 41.0 64-65 35.701192665565486 37.0 34.0 40.0 29.0 41.0 66-67 35.37283066516166 37.0 34.0 39.5 28.0 41.0 68-69 35.14612003133918 36.0 34.0 39.0 28.0 41.0 70-71 34.82401929488705 36.0 33.0 39.0 28.0 40.0 72-73 34.53013130278411 35.0 33.0 38.5 28.0 40.0 74-75 34.2467861810668 35.0 33.0 37.5 28.0 40.0 76-77 32.89268427401731 34.0 31.5 36.0 26.5 39.0 78-79 33.65389190722391 35.0 32.5 36.0 28.0 39.0 80-81 33.685821839041125 35.0 33.0 36.0 28.5 39.0 82-83 33.44669973998955 35.0 33.0 36.0 28.0 37.5 84-85 33.232153853662055 35.0 32.0 35.5 28.0 37.0 86-87 33.054873771950376 35.0 32.0 35.0 28.0 37.0 88-89 32.92971487123029 35.0 32.0 35.0 28.0 36.0 90-91 32.786575946065966 34.0 32.0 35.0 27.0 36.0 92-93 32.77573749552282 34.0 32.0 35.0 28.0 36.0 94-95 32.71212351091337 34.0 32.0 35.0 28.0 35.0 96-97 32.81954958686009 34.0 32.0 35.0 29.0 35.0 98-99 32.951152248699344 34.0 32.0 35.0 29.0 35.0 100 31.86623651193808 34.0 31.0 35.0 25.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 0.0 18 2.0 19 14.0 20 117.0 21 595.0 22 2737.0 23 8781.0 24 22721.0 25 47417.0 26 83036.0 27 129340.0 28 182060.0 29 236848.0 30 296241.0 31 360021.0 32 437066.0 33 539082.0 34 689923.0 35 906250.0 36 1300129.0 37 1961619.0 38 2132274.0 39 1063593.0 40 35597.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.5621672404792 20.49628075953307 13.642009593440216 24.29954240654752 2 15.610125242155021 21.358896930697092 39.62558828241849 23.405389544729395 3 18.692215602373103 25.662666615942136 30.29158969746492 25.35352808421984 4 13.075527834699061 17.386395085067612 37.981301071040065 31.556776009193264 5 13.261882749056486 37.825361670549576 35.533915885292686 13.378839695101243 6 31.046333924394737 37.411484530060186 18.059637788985714 13.482543756559362 7 27.16978372978911 32.204202898884034 22.75708104594103 17.86893232538582 8 25.030741325924748 36.43024402173205 20.834876149254118 17.70413850308908 9 25.62680490297317 16.274475193436537 21.18036150572701 36.91835839786329 10-11 24.7335001107761 26.51976950905106 28.569640027506203 20.17709035266664 12-13 25.082602939361394 24.032462763514875 28.88532316339743 21.9996111337263 14-15 22.16899028160128 25.58248967175777 26.288054848351738 25.960465198289217 16-17 21.947241636787783 28.607851073991537 27.13589927577729 22.30900801344339 18-19 21.951416311521694 27.940515323360604 28.662081106015957 21.445987259101745 20-21 22.649394086049842 27.127872041707196 28.594068799624328 21.62866507261863 22-23 22.39950611672727 27.00052893472298 28.416158958183104 22.18380599036665 24-25 22.188027480403306 27.1642476158419 28.53203622337489 22.115688680379897 26-27 22.151951610506824 27.32489708715179 28.429177342742634 22.09397395959875 28-29 22.113959636991343 27.36191968599509 28.462900932134875 22.06121974487869 30-31 22.353134291300165 27.292861733192925 28.29881633902375 22.055187636483158 32-33 22.13201080196325 27.45646252535463 28.252261618252465 22.15926505442965 34-35 22.301648389296957 27.449186507134236 28.285489665879204 21.9636754376896 36-37 22.306530443128665 27.34289790597461 28.227463402418852 22.12310824847787 38-39 22.114723208388952 27.55161518112037 28.254675836014375 22.078985774476294 40-41 22.405331007622976 27.392513089439046 28.136080848270375 22.066075054667607 42-43 22.259916080776325 27.466109977929047 27.958100019066855 22.315873922227773 44-45 22.313984118718093 27.615929936862592 27.820990305753323 22.24909563866599 46-47 22.369952630889358 27.53811646484241 27.629436413140134 22.462494491128098 48-49 22.282982135867897 27.63155815045568 27.628812957974013 22.45664675570241 50-51 22.289211007888586 27.758860993427003 27.537323663660967 22.414604335023448 52-53 22.47066650103912 27.641549709943426 27.409078854584422 22.478704934433036 54-55 22.46283673391192 27.56220856719352 27.453664578517827 22.521290120376737 56-57 22.37032832405084 27.731330339676557 27.452803748070924 22.445537588201677 58-59 22.35315310162778 27.774391518010905 27.453452852324105 22.41900252803721 60-61 22.44957247425624 27.74633185473061 27.465057707111846 22.339037963901305 62-63 22.47507544739386 27.736162532031127 27.4239136965511 22.36484832402391 64-65 22.379901938997328 27.705522218281075 27.411516992069494 22.5030588506521 66-67 22.452362016120407 27.744486226029853 27.259042728841386 22.544109029008357 68-69 22.367622760955587 27.721695733242353 27.407139168941967 22.50354233686009 70-71 22.358898087618524 27.500311972097574 27.490909417367792 22.649880522916106 72-73 22.45989655491295 27.566786552928036 27.394598688061812 22.578718204097207 74-75 22.24917291615178 27.706494441160203 27.394524676903192 22.649807965784817 76-77 22.361927687954324 27.62694853566108 27.367114617392087 22.64400915899251 78-79 22.35736550785698 27.558869932792945 27.323798778279656 22.759965781070417 80-81 22.353271885996804 27.59548690620999 27.35167299530015 22.699568212493055 82-83 22.45094729646958 27.567884098204214 27.47461168930322 22.506556916022987 84-85 22.50267597601127 27.57312364557326 27.365244839736086 22.55895553867938 86-87 22.316648958690397 27.551646909522976 27.535561063800664 22.596143067985963 88-89 22.400237795686973 27.50321980493633 27.493387549425197 22.6031548499515 90-91 22.459290436119357 27.575936149506674 27.46371260177743 22.50106081259654 92-93 22.48215782908325 27.475085477384457 27.534957809267418 22.507798884264872 94-95 22.26123129385152 27.492289471545007 27.64628223432077 22.600197000282705 96-97 22.312373549995463 27.62140153696096 27.70212363559825 22.36410127744532 98-99 23.403825857553077 29.625068449244363 27.878226071443557 19.092879621759 100 30.094605543679297 41.056539035472994 28.848855420847702 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1760.0 1 1628.5 2 2408.0 3 3569.5 4 4892.0 5 7849.5 6 10553.5 7 12703.0 8 14223.0 9 14296.0 10 13035.0 11 11381.0 12 11720.0 13 15175.5 14 23787.0 15 35245.0 16 44642.5 17 50456.0 18 52456.5 19 51734.0 20 49532.0 21 47474.5 22 47658.5 23 51654.0 24 60549.0 25 74496.5 26 93706.0 27 114753.0 28 135324.0 29 159621.5 30 182293.5 31 202100.5 32 226158.5 33 251492.0 34 274759.5 35 298489.5 36 324720.0 37 347106.0 38 364296.0 39 377901.0 40 391871.5 41 406134.5 42 415403.5 43 424866.0 44 435117.5 45 441735.5 46 443999.0 47 445324.0 48 447697.0 49 447612.0 50 444213.0 51 437805.5 52 425067.5 53 407286.0 54 388247.0 55 366697.5 56 340414.0 57 311337.0 58 280793.0 59 244860.0 60 207054.0 61 171155.5 62 137679.5 63 108497.0 64 83450.5 65 63919.0 66 48600.0 67 37286.5 68 28625.5 69 21100.0 70 15145.0 71 10647.0 72 7466.5 73 5127.5 74 3462.5 75 2344.5 76 1614.5 77 1106.0 78 761.5 79 525.0 80 359.0 81 244.0 82 173.0 83 117.0 84 73.5 85 55.0 86 44.5 87 34.0 88 26.0 89 18.0 90 13.5 91 9.5 92 6.5 93 5.0 94 3.0 95 1.5 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 1.2457519857286652E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0016434343504035853 20-21 0.003100151619934636 22-23 0.0049838243750128484 24-25 0.001327783549615053 26-27 0.001649762832205404 28-29 0.004233219484366989 30-31 0.008134597394640378 32-33 0.014350914087162995 34-35 2.0822429805167917E-4 36-37 8.770975361209475E-4 38-39 0.002098688491716324 40-41 0.0027089333029363893 42-43 3.1569202849566537E-4 44-45 2.5341116772879737E-5 46-47 0.003773409191008279 48-49 0.003800491360380944 50-51 9.784750224786226E-4 52-53 0.0012820897488359582 54-55 0.001017085037511334 56-57 0.0016239400589555635 58-59 6.183006503473939E-4 60-61 4.0822555479670344E-4 62-63 0.001653521079703963 64-65 4.530548051795519E-4 66-67 0.002133605938796206 68-69 0.001633650414852843 70-71 6.942640205870828E-4 72-73 6.254051471693677E-4 74-75 0.008362671963600332 76-77 0.003099562961622411 78-79 0.006445452314691343 80-81 9.024168334257773E-5 82-83 0.00518262393956864 84-85 0.002903120794927742 86-87 8.533891639488592E-4 88-89 0.0033463048066943207 90-91 8.100428977587099E-4 92-93 2.8802075592775518E-5 94-95 6.128072582368309E-4 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 324.0 20-21 995.0 22-23 2051.0 24-25 4830.0 26-27 6986.0 28-29 13453.0 30-31 29347.0 32-33 39507.0 34-35 57291.0 36-37 83430.0 38-39 95858.0 40-41 97889.0 42-43 107517.0 44-45 124844.0 46-47 124584.0 48-49 115121.0 50-51 106924.0 52-53 105355.0 54-55 113963.0 56-57 118701.0 58-59 116637.0 60-61 112752.0 62-63 110349.0 64-65 115696.0 66-67 122461.0 68-69 123535.0 70-71 121569.0 72-73 115069.0 74-75 118516.0 76-77 117694.0 78-79 123912.0 80-81 126339.0 82-83 121818.0 84-85 125471.0 86-87 132440.0 88-89 145318.0 90-91 153270.0 92-93 166288.0 94-95 191429.0 96-97 394865.0 98-99 2066828.0 100-101 4164238.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.64804130118446 #Duplication Level Percentage of deduplicated Percentage of total 1 89.65656801825152 75.8925287253141 2 7.057899764176597 11.94874781475281 3 1.802022585068945 4.576130466197497 4 0.6837555564899652 2.315142743427078 5 0.32076095444754876 1.357589325994173 6 0.1583278386046294 0.8041284852799162 7 0.09635347508774858 0.5709293057118272 8 0.06218500683159736 0.42110712212763934 9 0.03390123856537996 0.2582706098019231 >10 0.12523273344061747 1.6014643702625422 >50 0.002280170997228015 0.12879237621267609 >100 6.561055654263767E-4 0.08834115789645106 >500 3.7703203483574474E-5 0.018526495707219766 >1k 1.88492693767987E-5 0.01830100131411956 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 9.582707582528195E-6 2 0.0 2.874812274758458E-5 0.0 0.0 9.582707582528195E-6 3 0.0 2.874812274758458E-5 0.0 9.582707582528195E-6 9.582707582528195E-6 4 0.0 5.749624549516916E-5 0.0 3.833083033011278E-5 9.582707582528195E-6 5 0.0 6.707895307769735E-5 0.0 4.791353791264097E-5 9.582707582528195E-6 6 0.0 6.707895307769735E-5 0.0 4.791353791264097E-5 9.582707582528195E-6 7 0.0 6.707895307769735E-5 0.0 5.749624549516916E-5 9.582707582528195E-6 8 0.0 8.624436824275375E-5 0.0 5.749624549516916E-5 9.582707582528195E-6 9 0.0 2.683158123107894E-4 0.0 7.666166066022556E-5 9.582707582528195E-6 10-11 0.0 2.683158123107894E-4 0.0 1.48531967529187E-4 9.582707582528195E-6 12-13 0.0 2.683158123107894E-4 0.0 1.629060289029793E-4 9.582707582528195E-6 14-15 0.0 3.9768236467492004E-4 0.0 1.820714440680357E-4 2.874812274758458E-5 16-17 0.0 4.168477798399765E-4 0.0 1.9165415165056388E-4 2.874812274758458E-5 18-19 0.0 5.222575632477866E-4 0.0 2.1081956681562027E-4 3.833083033011278E-5 20-21 0.0 6.037105776992763E-4 0.0 2.44359043354469E-4 4.3122184121376875E-5 22-23 0.0 6.659981769857095E-4 0.0 2.683158123107894E-4 5.270489170390507E-5 24-25 0.0 7.42659837645935E-4 0.0 2.97063935058374E-4 6.707895307769735E-5 26-27 0.0 7.809906679760478E-4 0.0 3.92891010883656E-4 6.707895307769735E-5 28-29 0.0 7.90573375558576E-4 0.0 7.761993141847836E-4 6.707895307769735E-5 30-31 0.0 8.720263900100657E-4 0.0 0.001930915577879431 6.707895307769735E-5 32-33 0.0 8.816090975925938E-4 0.0 0.004197225921147349 8.624436824275375E-5 34-35 0.0 0.0010109756499567246 0.0 0.007536799513658425 8.624436824275375E-5 36-37 0.0 0.0011259681409470628 0.0 0.01306123043498593 8.624436824275375E-5 38-39 0.0 0.001183464386442232 0.0 0.020952590129197896 8.624436824275375E-5 40-41 0.0 0.0012457519857286652 0.0 0.029615357783803385 8.624436824275375E-5 42-43 0.0 0.0012888741698500422 0.0 0.037636084030379484 8.624436824275375E-5 44-45 0.0 0.0015188591518307188 0.0 0.04673965623378126 9.103572203401785E-5 46-47 0.0 0.0016865565345249621 0.0 0.05623611944806671 1.0061842961654604E-4 48-49 0.0 0.0017009305958987544 0.0 0.06586194921471628 1.2457519857286652E-4 50-51 0.0 0.0019452896392532235 0.0 0.0748265721581714 1.2457519857286652E-4 52-53 0.0 0.0019644550544182797 0.0 0.0838486913471217 1.2457519857286652E-4 54-55 0.0 0.0019884118233746 0.0 0.09263124284650878 1.2457519857286652E-4 56-57 0.0 0.002021951299913449 0.0 0.10081487512198786 1.2457519857286652E-4 58-59 0.0 0.002045908068869769 0.0 0.10885476678372902 1.2457519857286652E-4 60-61 9.582707582528195E-6 0.002093821606782411 0.0 0.11707193853574695 1.2457519857286652E-4 62-63 9.582707582528195E-6 0.002160900559860108 0.0 0.1246326948183617 1.2457519857286652E-4 64-65 9.582707582528195E-6 0.0024004682494233125 0.0 0.13208804131756863 1.2457519857286652E-4 66-67 9.582707582528195E-6 0.0024052596032145767 0.0 0.13957213593952314 1.2936655236413063E-4 68-69 9.582707582528195E-6 0.002481921263874802 0.0 0.14690290724015723 1.341579061553947E-4 70-71 9.582707582528195E-6 0.002510669386622387 0.0 0.15351976682589294 1.341579061553947E-4 72-73 9.582707582528195E-6 0.0025394175093699715 0.0 0.15920231242233215 1.9165415165056388E-4 74-75 9.582707582528195E-6 0.0025394175093699715 0.0 0.16355286166479996 1.9165415165056388E-4 76-77 9.582707582528195E-6 0.002601705108656405 0.0 0.16763988644874822 1.9165415165056388E-4 78-79 9.582707582528195E-6 0.002644827292777782 0.0 0.17024159155740465 1.9165415165056388E-4 80-81 9.582707582528195E-6 0.002644827292777782 0.0 0.17105133034812828 1.9165415165056388E-4 82-83 9.582707582528195E-6 0.00265441000036031 0.0 0.17178919883198293 2.0123685923309208E-4 84-85 9.582707582528195E-6 0.0026735754155253664 0.0 0.1719952270450073 2.0123685923309208E-4 86-87 9.582707582528195E-6 0.002731071661020535 0.0 0.17214375901253648 2.0602821302435616E-4 88 9.582707582528195E-6 0.0028460641520108737 0.0 0.17217250713528406 2.1081956681562027E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11805 0.0 45.452576 1 GTATCAA 20255 0.0 32.511227 1 TCAACGC 23605 0.0 27.087896 4 ATCAACG 23955 0.0 26.72606 3 CAACGCA 24080 0.0 26.519802 5 TATCAAC 25015 0.0 25.804804 2 AACGCAG 24915 0.0 25.712595 6 ACGCAGA 29675 0.0 21.560785 7 GTACATG 30195 0.0 21.512571 1 CGCAGAG 30635 0.0 20.911678 8 TACATGG 30545 0.0 20.760366 2 ACATGGG 30305 0.0 20.32118 3 GTGGTAT 6650 0.0 18.154545 1 CATGGGG 22200 0.0 18.127285 4 GAGTACT 20375 0.0 17.756422 12-13 GCAGAGT 35770 0.0 17.523304 9 TGGTATC 6630 0.0 17.35096 2 CAGAGTA 34905 0.0 16.414513 10-11 GAGTACA 21785 0.0 16.06557 1 AGAGTAC 31595 0.0 16.017752 10-11 >>END_MODULE