##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138715_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7320342 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.75612888031734 31.0 31.0 34.0 30.0 34.0 2 32.02389779056771 33.0 31.0 34.0 30.0 34.0 3 31.930427294243902 31.0 31.0 34.0 30.0 34.0 4 35.788188174814785 37.0 35.0 37.0 35.0 37.0 5 35.56654019716565 37.0 35.0 37.0 33.0 37.0 6 35.65372983939822 37.0 35.0 37.0 33.0 37.0 7 35.57018620168293 37.0 35.0 37.0 33.0 37.0 8 35.55524154472564 37.0 35.0 37.0 33.0 37.0 9 37.275820310034696 39.0 37.0 39.0 34.0 39.0 10-11 37.147697266056696 39.0 37.0 39.0 33.0 39.0 12-13 37.10653716725257 39.0 37.0 39.0 33.0 39.0 14-15 38.291586035187976 40.0 38.0 41.0 33.0 41.0 16-17 38.24449861768753 40.0 38.0 41.0 33.0 41.0 18-19 38.2427067615147 40.0 38.0 41.0 33.0 41.0 20-21 38.23952155335194 40.0 38.0 41.0 33.0 41.0 22-23 38.17141657466017 40.0 37.5 41.0 33.0 41.0 24-25 38.09095825752246 40.0 37.0 41.0 33.0 41.0 26-27 37.923340995462596 40.0 37.0 41.0 33.0 41.0 28-29 37.770590726234055 40.0 37.0 41.0 32.0 41.0 30-31 37.613472809868014 39.5 37.0 41.0 32.0 41.0 32-33 37.44782875503228 39.0 36.0 41.0 32.0 41.0 34-35 37.31601998375351 39.0 36.0 41.0 31.0 41.0 36-37 37.4060246055136 39.0 36.0 41.0 31.0 41.0 38-39 37.372891916050335 39.0 36.0 41.0 31.0 41.0 40-41 37.33513427551459 39.0 36.0 41.0 31.0 41.0 42-43 37.41130691719197 39.0 36.0 41.0 31.0 41.0 44-45 37.44739957986334 40.0 36.0 41.0 31.5 41.0 46-47 37.32684042092369 39.0 36.0 41.0 31.0 41.0 48-49 37.26020368905603 39.0 36.0 41.0 31.0 41.0 50-51 37.15984219656531 39.0 36.0 41.0 31.0 41.0 52-53 37.00296223076827 39.0 35.0 41.0 31.0 41.0 54-55 36.82353340549737 39.0 35.0 40.0 31.0 41.0 56-57 36.67979114188823 39.0 35.0 40.0 30.0 41.0 58-59 36.414913877212335 38.0 35.0 40.0 30.0 41.0 60-61 36.249274113457346 38.0 34.5 40.0 30.0 41.0 62-63 35.98186777214205 37.5 34.0 40.0 29.0 41.0 64-65 35.66896382152464 37.0 34.0 40.0 29.0 41.0 66-67 35.337694721386725 36.5 34.0 39.0 29.0 41.0 68-69 35.10270144207509 36.0 34.0 39.0 29.0 41.0 70-71 34.77677814114344 35.5 33.0 39.0 28.0 40.0 72-73 34.48561425808521 35.0 33.0 38.0 28.0 40.0 74-75 34.204362293405524 35.0 33.0 37.0 28.0 39.5 76-77 32.85691838236894 34.0 31.5 36.0 26.5 39.0 78-79 33.61123198804419 35.0 32.5 36.0 28.0 39.0 80-81 33.65208288230764 35.0 33.0 36.0 29.0 38.5 82-83 33.4319900462052 35.0 33.0 36.0 28.5 37.0 84-85 33.234172273581635 35.0 33.0 35.0 28.0 37.0 86-87 33.068508346098525 35.0 32.0 35.0 28.0 36.5 88-89 32.95734025497397 35.0 32.0 35.0 28.0 36.0 90-91 32.82480965123389 34.0 32.0 35.0 28.0 36.0 92-93 32.82391862814946 34.0 32.0 35.0 28.5 36.0 94-95 32.76662781631964 34.0 32.0 35.0 29.0 35.0 96-97 32.868244829357565 34.0 32.0 35.0 29.0 35.0 98-99 32.99615869298091 34.0 32.0 35.0 29.0 35.0 100 31.940234506708673 34.0 31.0 35.0 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 2.0 17 1.0 18 1.0 19 12.0 20 71.0 21 379.0 22 1747.0 23 5982.0 24 15319.0 25 31582.0 26 56183.0 27 87476.0 28 123222.0 29 162778.0 30 203091.0 31 246861.0 32 299940.0 33 370676.0 34 477773.0 35 637031.0 36 927860.0 37 1413232.0 38 1495028.0 39 738967.0 40 25128.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.41508115331224 19.749022654952462 13.555678136349366 24.280218055385937 2 15.873001561948882 20.89618217290941 39.357286859001945 23.873529406139767 3 19.007328090942423 25.049205472326086 29.955887198435477 25.98757923829601 4 13.382366561562286 17.06047340411145 37.107542243244914 32.449617791081344 5 13.773331901706232 37.44263587684838 34.93564918141803 13.848383040027365 6 31.86465878233558 36.44265527484918 17.777366139450862 13.91531980336438 7 27.937588161864568 31.9873852888294 22.002400980719205 18.072625568586822 8 25.73497249172238 35.860633287351874 20.34257415842047 18.061820062505276 9 26.061678539062793 16.13339923189381 20.588723860169374 37.21619836887402 10-11 25.270287918242072 26.184186476533473 27.93211027572209 20.613415329502367 12-13 25.65066632132761 23.614033333415296 28.33073236195795 22.40456798329914 14-15 22.729423024224822 25.03776462902963 25.801205736016158 26.431606610729393 16-17 22.504966298022687 28.170821800402223 26.55847909838092 22.765732803194165 18-19 22.5550961811743 27.36791502825427 28.168123054746363 21.90886573582507 20-21 23.320792881861596 26.51407235109147 28.089878123369573 22.075256643677356 22-23 23.072741042892922 26.411105674618685 27.934486455732888 22.5816668267555 24-25 22.81124038611538 26.52354921281915 28.042084654594397 22.623125746471075 26-27 22.735119709058413 26.67551767349547 28.00498028074887 22.58438233669725 28-29 22.7417709079221 26.736925890860956 27.997433542137408 22.523869659079544 30-31 22.967176764785442 26.65677599520741 27.81228760237664 22.563759637630508 32-33 22.74053836908795 26.85058702902191 27.789614869697125 22.619259732193015 34-35 22.85249569290523 26.847379139646478 27.792321264451374 22.50780390299692 36-37 22.877568861228752 26.723966476751016 27.741636039346158 22.656828622674073 38-39 22.6827551765687 26.91648442331133 27.845538826146317 22.555221573973654 40-41 22.99440977033167 26.788711069304444 27.64409530225798 22.572783858105904 42-43 22.792949816310713 26.865812104563975 27.529081255550803 22.81215682357451 44-45 22.882122304136747 26.97999519763062 27.354395469135333 22.783487029097298 46-47 22.984605041329765 26.91898256547119 27.156562557828273 22.939849835370772 48-49 22.881682564217368 27.05123561295743 27.10871320190819 22.958368620917007 50-51 22.86437315370891 27.19732937862941 27.032445379091147 22.905852088570537 52-53 23.064285734259173 27.07867616667575 26.87421491496992 22.98282318409516 54-55 23.04171640802181 26.92580619968201 26.99990050455348 23.032576887742696 56-57 22.94412201090652 27.08598221375577 26.986851755566693 22.983044019771018 58-59 22.934044063784015 27.167839102456853 26.958487877414978 22.939628956344155 60-61 22.999244493630698 27.05169627279823 27.018616102040788 22.930443131530282 62-63 23.060355503707864 27.202709532539803 26.8724802363013 22.86445472745104 64-65 22.967070614871236 27.166021370958397 26.905315673350188 22.96159234082017 66-67 23.047986340943176 27.134435604744294 26.768504471160036 23.04907358315249 68-69 22.945289295602457 27.119421463924944 26.922933636848263 23.01235560362434 70-71 22.93202488195037 26.874350082029576 27.001111887691803 23.19251314832826 72-73 23.02288929059859 26.96351369801162 26.870822033636898 23.142774977752882 74-75 22.808340523519924 27.123680850500335 26.902678443239807 23.16530018273993 76-77 23.014977286668202 27.001287867962116 26.85231654951425 23.13141829585543 78-79 22.91267569756564 27.00784724906786 26.822953898645007 23.25652315472149 80-81 22.98126907912675 27.01344258253839 26.8010436018713 23.20424473646356 82-83 22.960113913696787 26.96786614733317 26.979150505380016 23.092869433590025 84-85 23.069751031503248 26.933845841502308 26.876794263659914 23.119608863334527 86-87 22.891160010298346 26.977266489183055 27.018289696501878 23.113283804016717 88-89 22.92469140093108 26.923514626494345 26.971868685290428 23.17992528728415 90-91 22.950943430711675 26.92156324791198 27.03154424162284 23.095949079753506 92-93 22.997881312936574 26.84081232572581 27.018495894536464 23.142810466801148 94-95 22.879503275563202 26.905106401738095 27.07388565972072 23.141504662977987 96-97 22.837740864044072 27.04487414957993 27.16784480907461 22.94954017730139 98-99 24.011081871954605 29.013311133895964 27.3140260138996 19.66158098024983 100 31.05285717600903 40.66549588497308 28.28164693901788 0.0 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1735.0 1 1487.0 2 1888.0 3 2662.5 4 3479.5 5 5371.5 6 7138.0 7 8838.0 8 10305.5 9 10577.0 10 9542.0 11 8214.5 12 8533.0 13 11162.5 14 17509.0 15 26059.5 16 32959.0 17 36782.0 18 37613.0 19 36303.5 20 34001.5 21 31663.0 22 30778.5 23 32826.0 24 38235.5 25 46899.0 26 58830.5 27 71903.0 28 84567.5 29 99172.0 30 112992.0 31 125332.0 32 139037.0 33 153396.5 34 166816.5 35 180083.5 36 195503.0 37 209728.0 38 222286.5 39 233139.5 40 243937.5 41 255082.5 42 264312.0 43 274036.0 44 285018.5 45 294759.0 46 302609.0 47 309818.5 48 316042.0 49 319902.0 50 321740.5 51 321867.5 52 316618.5 53 309152.5 54 300468.5 55 287147.5 56 270015.5 57 250978.0 58 229855.0 59 203441.0 60 174740.5 61 146431.0 62 119434.5 63 94438.0 64 72450.5 65 56500.5 66 43979.5 67 33225.5 68 24973.5 69 18532.0 70 13237.0 71 9158.0 72 6200.0 73 4096.0 74 2754.5 75 1886.5 76 1310.0 77 896.0 78 601.5 79 405.0 80 281.0 81 181.0 82 118.0 83 74.0 84 49.5 85 35.0 86 26.0 87 21.5 88 16.0 89 12.0 90 8.5 91 6.0 92 5.0 93 3.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 2.458901510339271E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0016460979555326786 20-21 0.0032172067418718914 22-23 0.0052259556343008775 24-25 0.0011821085345093013 26-27 0.0018320578541995039 28-29 0.004426382856393431 30-31 0.008470343074250713 32-33 0.0145570912210018 34-35 1.794116443539535E-4 36-37 8.885621571790095E-4 38-39 0.0021277312037170345 40-41 0.0027258335436556366 42-43 3.707352171292788E-4 44-45 1.4417198102610226E-5 46-47 0.0038541572304902085 48-49 0.003887364859566727 50-51 8.896808460610652E-4 52-53 0.0011865171745715918 54-55 0.0010316241715198214 56-57 0.0014309357321900906 58-59 7.441246075036429E-4 60-61 4.044789941765335E-4 62-63 0.0018305147286988503 64-65 4.958057273852035E-4 66-67 0.002050892105119669 68-69 0.0018292754741018446 70-71 4.914209343115096E-4 72-73 9.193471363711426E-4 74-75 0.00819718614381105 76-77 0.0031725103305419956 78-79 0.006547167408380015 80-81 6.376975837638551E-5 82-83 0.005007819511149803 84-85 0.0029902520603824045 86-87 7.456971125556178E-4 88-89 0.0035726405434930533 90-91 9.436502716868463E-4 92-93 4.058785830453963E-5 94-95 6.758194805069228E-4 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 207.0 20-21 629.0 22-23 1359.0 24-25 2974.0 26-27 4734.0 28-29 9723.0 30-31 19899.0 32-33 26494.0 34-35 38482.0 36-37 55858.0 38-39 64077.0 40-41 65496.0 42-43 73215.0 44-45 85710.0 46-47 85719.0 48-49 79614.0 50-51 72785.0 52-53 71136.0 54-55 77639.0 56-57 81046.0 58-59 79653.0 60-61 77354.0 62-63 75476.0 64-65 79656.0 66-67 84155.0 68-69 84844.0 70-71 83227.0 72-73 79281.0 74-75 82013.0 76-77 81420.0 78-79 86189.0 80-81 87414.0 82-83 84307.0 84-85 86221.0 86-87 91492.0 88-89 100732.0 90-91 105190.0 92-93 114718.0 94-95 132338.0 96-97 283402.0 98-99 1494228.0 100-101 2930236.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.23071188674498 #Duplication Level Percentage of deduplicated Percentage of total 1 91.26122633412022 79.60781740782666 2 6.284686786095059 10.964354046725827 3 1.3899134660826664 3.637294233220925 4 0.49490016090653455 1.7268197339496663 5 0.21975001870588518 0.9584475284419944 6 0.11690792304015586 0.6118776811196156 7 0.06681338230371865 0.4079725231340239 8 0.04438135375407478 0.30971336659723236 9 0.021992359811470227 0.17265682821815898 >10 0.09648202060681586 1.317270841955822 >50 0.0021039645764407834 0.1243450040089263 >100 7.700544474549693E-4 0.10766360932098284 >500 4.811703424521526E-5 0.03242401230099682 >1k 2.405851526918141E-5 0.021343183179045884 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.7321127892658566E-5 0.0 0.0 0.0 3 0.0 2.7321127892658566E-5 0.0 0.0 0.0 4 0.0 6.830281973164642E-5 0.0 1.3660563946329283E-5 0.0 5 0.0 8.19633836779757E-5 0.0 1.3660563946329283E-5 0.0 6 2.7321127892658566E-5 8.19633836779757E-5 0.0 1.3660563946329283E-5 0.0 7 2.7321127892658566E-5 8.19633836779757E-5 0.0 1.3660563946329283E-5 0.0 8 2.7321127892658566E-5 9.562394762430498E-5 0.0 1.3660563946329283E-5 1.3660563946329283E-5 9 2.7321127892658566E-5 2.86871842872915E-4 0.0 4.098169183898785E-5 1.3660563946329283E-5 10-11 4.098169183898785E-5 2.86871842872915E-4 0.0 4.098169183898785E-5 1.3660563946329283E-5 12-13 5.464225578531713E-5 3.073626887924089E-4 0.0 4.098169183898785E-5 1.3660563946329283E-5 14-15 5.464225578531713E-5 4.507986102288664E-4 0.0 4.098169183898785E-5 5.464225578531713E-5 16-17 1.0928451157063426E-4 4.507986102288664E-4 0.0 4.098169183898785E-5 8.879366565114034E-5 18-19 1.0928451157063426E-4 4.781197381215249E-4 0.0 4.781197381215249E-5 1.1611479354379892E-4 20-21 1.0928451157063426E-4 5.054408660141834E-4 0.0 5.464225578531713E-5 1.434359214364575E-4 22-23 1.0928451157063426E-4 6.147253775848178E-4 0.0 9.562394762430498E-5 1.5709648538278677E-4 24-25 1.0928451157063426E-4 7.581612990212752E-4 0.0 1.3660563946329285E-4 1.7075704932911605E-4 26-27 1.0928451157063426E-4 8.606155286187448E-4 0.0 1.9124789524860997E-4 1.7758733130228069E-4 28-29 1.0928451157063426E-4 8.606155286187448E-4 0.0 5.054408660141836E-4 1.9124789524860997E-4 30-31 1.0928451157063426E-4 9.289183483503913E-4 0.0 0.0013114141388476113 2.1173874116810388E-4 32-33 1.0928451157063426E-4 9.699000401893792E-4 0.0 0.0033400078848775097 2.458901510339271E-4 34-35 1.3660563946329285E-4 0.0011543176534648245 0.0 0.0063931439268821045 2.732112789265857E-4 36-37 1.3660563946329285E-4 0.0013455655487134345 0.0 0.011283625819667988 2.732112789265857E-4 38-39 1.3660563946329285E-4 0.0013797169585792577 0.0 0.01874229373436378 2.732112789265857E-4 40-41 1.3660563946329285E-4 0.001543643725935209 0.0 0.0260780165735426 2.8004156089975034E-4 42-43 1.3660563946329285E-4 0.0015982859817205261 0.0 0.03332494574707029 2.86871842872915E-4 44-45 1.434359214364575E-4 0.001789533876969136 0.0 0.041241242553968105 2.86871842872915E-4 46-47 1.5709648538278677E-4 0.0019466303623519227 0.0 0.04982007671226289 2.937021248460796E-4 48-49 1.639267673559514E-4 0.001960290926298252 0.0 0.05837158974266503 3.0053240681924426E-4 50-51 1.7075704932911605E-4 0.002213011359305344 0.0 0.06717582320607425 3.0053240681924426E-4 52-53 1.7758733130228069E-4 0.0022266719232516734 0.0 0.0753585010099255 3.073626887924089E-4 54-55 1.7758733130228069E-4 0.0022813141790369905 0.0 0.08415590419136154 3.1419297076557353E-4 56-57 1.7758733130228069E-4 0.0023359564348223076 0.0 0.09258447214624671 3.210232527387382E-4 58-59 1.7758733130228069E-4 0.002349616998768637 0.0 0.10076714995009796 3.278535347119028E-4 60-61 1.8441761327544533E-4 0.0024110895365271187 0.0 0.10926402072471478 3.278535347119028E-4 62-63 2.458901510339271E-4 0.002479392356258765 0.0 0.11722129922345159 3.415140986582321E-4 64-65 2.458901510339271E-4 0.0029097001205681374 0.0 0.12487804531536914 3.415140986582321E-4 66-67 2.5955071498025636E-4 0.002937021248460796 0.0 0.1326099245089915 3.5517466260456137E-4 68-69 2.5955071498025636E-4 0.0030189846321387716 0.0 0.14038961567642605 3.8249579049721993E-4 70-71 2.86871842872915E-4 0.0030599663239777595 0.0 0.14708329201012738 4.1664720036304313E-4 72-73 3.8249579049721993E-4 0.0030736268879240887 0.0 0.15230162743762518 4.507986102288664E-4 74-75 3.8249579049721993E-4 0.003107778297789912 0.0 0.15665934733650422 4.6445917417519566E-4 76-77 3.8932607247038457E-4 0.0032102325273873815 0.0 0.16057992918910072 4.6445917417519566E-4 78-79 3.961563544435492E-4 0.003292195911065357 0.0 0.1634623081817762 4.781197381215249E-4 80-81 3.961563544435492E-4 0.0033058564750116865 0.0 0.16450051104169722 4.917803020678542E-4 82-83 3.961563544435492E-4 0.0033195170389580158 0.0 0.16514255754717472 4.986105840410188E-4 84-85 3.961563544435492E-4 0.0033263473209311804 0.0 0.16538161741623547 5.054408660141834E-4 86-87 4.098169183898785E-4 0.0033604987307970036 0.0 0.1654909019278061 5.054408660141834E-4 88 4.098169183898785E-4 0.00342880155052865 0.0 0.16549773220977926 5.054408660141834E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8340 0.0 49.76087 1 GTATCAA 14475 0.0 33.152924 1 TCAACGC 18020 0.0 26.0874 4 ATCAACG 18445 0.0 25.44206 3 TATCAAC 18810 0.0 25.121922 2 CAACGCA 18730 0.0 25.120289 5 AACGCAG 19200 0.0 24.484112 6 GTACATG 24150 0.0 21.594683 1 TACATGG 23840 0.0 21.361977 2 GTGGTAT 4305 0.0 20.569307 1 ACGCAGA 23000 0.0 20.509878 7 ACATGGG 24520 0.0 20.270288 3 CGCAGAG 23620 0.0 19.936964 8 TGGTATC 4190 0.0 19.47821 2 CATGGGG 18960 0.0 18.12203 4 GAGTACT 14390 0.0 17.6955 12-13 GCAGAGT 27965 0.0 16.678787 9 CAGAGTA 26300 0.0 16.454626 10-11 AGAGTAC 24280 0.0 16.369799 10-11 GTACTTT 16125 0.0 15.894918 14-15 >>END_MODULE