##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138714_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3560410 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.93434744874888 31.0 31.0 34.0 30.0 34.0 2 32.182030440314456 34.0 31.0 34.0 30.0 34.0 3 32.1055215551018 34.0 31.0 34.0 30.0 34.0 4 35.474119553646915 37.0 35.0 37.0 34.0 37.0 5 35.279466971500476 37.0 35.0 37.0 33.0 37.0 6 35.816009111310215 37.0 35.0 37.0 33.0 37.0 7 35.73965414095568 37.0 35.0 37.0 33.0 37.0 8 35.70559851253086 37.0 35.0 37.0 33.0 37.0 9 37.197123645872246 39.0 37.0 39.0 34.0 39.0 10-11 37.08756028097888 39.0 37.0 39.0 33.0 39.0 12-13 37.03759552972832 39.0 37.0 39.0 33.0 39.0 14-15 38.06817529441834 39.0 37.5 41.0 33.0 41.0 16-17 38.0077132970641 39.0 37.0 41.0 33.0 41.0 18-19 38.022025553236844 39.0 37.5 41.0 33.5 41.0 20-21 38.01857809769584 39.0 37.0 41.0 33.5 41.0 22-23 37.95736058642502 39.0 37.0 41.0 33.0 41.0 24-25 37.88180110707772 39.0 37.0 41.0 33.0 41.0 26-27 37.71726270320278 39.0 37.0 41.0 33.0 41.0 28-29 37.565099338381486 39.0 37.0 41.0 33.0 41.0 30-31 37.43591601383865 39.0 37.0 40.0 32.0 41.0 32-33 37.278311215688774 38.0 36.5 40.0 32.0 41.0 34-35 37.16695453592774 38.0 36.0 40.0 31.5 41.0 36-37 37.23719891263535 38.0 36.0 40.0 32.0 41.0 38-39 37.21815801479892 38.0 36.0 40.0 31.5 41.0 40-41 37.180339313682964 38.0 36.0 40.0 31.0 41.0 42-43 37.256845049056054 38.0 36.5 40.5 32.0 41.0 44-45 37.27463057928086 39.0 36.5 41.0 32.0 41.0 46-47 37.16415630439816 38.0 36.0 40.5 31.0 41.0 48-49 37.10931134711909 38.0 36.0 40.0 31.0 41.0 50-51 37.03342013145251 38.0 36.0 40.0 31.0 41.0 52-53 36.90627789686949 38.0 36.0 40.0 31.0 41.0 54-55 36.753613510376326 38.0 35.0 40.0 31.0 41.0 56-57 36.63774175997932 38.0 35.0 40.0 31.0 41.0 58-59 36.42509048411476 38.0 35.0 40.0 30.0 41.0 60-61 36.28613441267048 38.0 35.0 40.0 30.0 41.0 62-63 36.08059763169928 38.0 35.0 40.0 30.0 41.0 64-65 35.81411485147209 38.0 34.0 39.5 29.0 41.0 66-67 35.52482411674651 37.0 34.0 39.0 29.0 41.0 68-69 35.323338170809436 37.0 34.0 39.0 29.0 40.5 70-71 35.050090574058544 36.5 34.0 38.5 29.0 40.0 72-73 34.78830348906594 36.0 34.0 38.0 28.5 40.0 74-75 34.547867210497515 35.5 33.5 38.0 28.0 39.5 76-77 33.38052795178643 34.5 31.5 37.0 26.5 38.5 78-79 34.03097353044901 35.0 33.0 37.0 28.5 39.0 80-81 34.050100327975734 35.0 33.0 37.0 29.0 38.5 82-83 33.841522131647764 35.0 33.0 37.0 29.0 38.0 84-85 33.65017635538923 35.0 33.0 36.0 29.0 38.0 86-87 33.49153968744123 35.0 33.0 36.0 28.5 38.0 88-89 33.38973158372367 35.0 33.0 36.0 29.0 38.0 90-91 33.254827047744996 35.0 33.0 35.5 28.0 38.0 92-93 33.25533548945137 35.0 33.0 35.0 29.0 38.0 94-95 33.182581564678166 35.0 32.5 35.0 29.0 37.0 96-97 33.28119280298039 35.0 33.0 35.0 29.0 37.0 98-99 33.38092717358589 35.0 33.0 35.0 29.0 37.0 100 32.40698199109972 34.0 31.0 35.0 26.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 3.0 17 7.0 18 19.0 19 35.0 20 103.0 21 324.0 22 1096.0 23 3165.0 24 7349.0 25 15189.0 26 26363.0 27 39964.0 28 56412.0 29 74088.0 30 93053.0 31 115376.0 32 142582.0 33 178212.0 34 231160.0 35 309805.0 36 457648.0 37 854592.0 38 639392.0 39 304595.0 40 9878.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.613578211498115 20.43629806679568 13.843349501883209 24.106774219823 2 15.464174069840272 21.134054785825228 40.03311416381821 23.36865698051629 3 18.63407227486288 25.516373404396347 30.287961379707045 25.561592941033723 4 12.99004889886277 17.50739381138689 38.104656486191196 31.397900803559143 5 13.316809019185992 37.73276111459074 35.550400094371156 13.400029771852118 6 31.011821672223146 37.47613336666283 18.056993436149206 13.455051524964823 7 27.133026814327565 32.242803497350025 22.711204608458015 17.9129650798644 8 24.913057765819104 36.57780985897692 20.706154628259103 17.802977746944872 9 25.415443726986496 16.46658671332796 21.208989975873564 36.90897958381198 10-11 24.53686513631857 26.65612949070472 28.59375746051719 20.21324791245952 12-13 24.989355158535112 24.07166590364593 28.949910263143853 21.989068674675107 14-15 22.100642903485834 25.65061327206698 26.366064582449773 25.88267924199741 16-17 21.899064995323574 28.719094149269324 27.173022208116482 22.20881864729062 18-19 21.866434330676018 28.02624509143876 28.72790146841851 21.379419109466706 20-21 22.569412015850357 27.15173211410402 28.76156983966367 21.517286030381953 22-23 22.283472297778182 27.08090951446088 28.560617137819833 22.075001049941097 24-25 22.08752325209109 27.204072053841877 28.651858474438047 22.056546219628988 26-27 22.08293647999557 27.345208225204416 28.574143025169953 21.997712269630064 28-29 22.077456493748052 27.440903436408476 28.54517850098134 21.936461568862132 30-31 22.295486265081422 27.311155786369373 28.427095030772776 21.966262917776426 32-33 22.04484345212892 27.45284412553206 28.428840862464472 22.073471559874548 34-35 22.223969980132242 27.501112424291378 28.3713116403511 21.903605955225277 36-37 22.209323561565075 27.397581484506837 28.34152791623775 22.051567037690333 38-39 22.044087112368757 27.58843897126245 28.399122964357517 21.968350952011285 40-41 22.328115682788404 27.445027954436952 28.241176566723365 21.985679796051276 42-43 22.197541967170125 27.51739209259797 28.04198810028919 22.24307783994272 44-45 22.242114287229374 27.61255939877977 27.965372684073614 22.179953629917247 46-47 22.296620171961496 27.618641336178108 27.73693859445817 22.347799897402226 48-49 22.26876657938784 27.687558866521826 27.685917305695675 22.35775724839466 50-51 22.254236614986965 27.804462074255703 27.606963619899094 22.334337690858234 52-53 22.435418741011173 27.71892785583459 27.516179887155655 22.329473515998576 54-55 22.392528285216372 27.643646554201023 27.51766715205059 22.446158008532016 56-57 22.353090939570663 27.799494760978373 27.529609097441686 22.31780520200928 58-59 22.32233022164581 27.7684767296668 27.545293916648777 22.36389913203861 60-61 22.415334771518282 27.770750684679797 27.518064447839937 22.295850095961985 62-63 22.39306594398749 27.81109709474721 27.5041663357473 22.291670625518 64-65 22.32451900256451 27.765683927749617 27.55323401813322 22.35656305155265 66-67 22.37332026363723 27.783855245578838 27.369270342540865 22.47355414824307 68-69 22.337282640214763 27.80177777747841 27.456804210408613 22.40413537189821 70-71 22.310458485428704 27.63311679115823 27.485818745429462 22.57060597798361 72-73 22.359645514843372 27.6721703574922 27.495826434997806 22.472357692666623 74-75 22.204268205702387 27.832093928599992 27.48319246762107 22.480445398076544 76-77 22.33569010122019 27.75395669572015 27.432664703599848 22.477688499459813 78-79 22.270853275450637 27.680602555287415 27.427446645005592 22.621097524256356 80-81 22.25253721143146 27.779673097727336 27.41605125496215 22.551738435879056 82-83 22.315901885384935 27.746855471583054 27.49601105950404 22.44123158352797 84-85 22.3802704554199 27.729469505729114 27.4449564099436 22.445303628907386 86-87 22.224883706172935 27.782976881867654 27.506817750027203 22.48532166193221 88-89 22.282337927790902 27.72771543444859 27.511306642657402 22.4786399951031 90-91 22.315857280159175 27.813931600145715 27.43264163220192 22.43756948749319 92-93 22.31916043382357 27.769135384508992 27.499965823567585 22.411738358099857 94-95 22.1684949353557 27.81123662544972 27.585849116109085 22.434419323085493 96-97 22.155003612583002 27.952337177234487 27.631806386708234 22.260852823474277 98-99 23.318764625653014 29.886165120077944 27.85644755962525 18.93862269464379 100 22.30397214786671 30.930451619655656 21.50433905983252 25.261237172645114 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1091.0 1 871.5 2 940.5 3 1306.5 4 1705.5 5 2574.5 6 3392.5 7 4099.0 8 4594.0 9 4651.5 10 4246.5 11 3704.5 12 3835.5 13 4960.0 14 7763.5 15 11455.0 16 14333.5 17 16097.5 18 16873.0 19 16877.5 20 16438.0 21 16004.5 22 16197.0 23 17799.0 24 21061.0 25 25705.5 26 31700.0 27 38636.5 28 46245.5 29 54650.0 30 62663.0 31 69914.0 32 76903.5 33 83767.5 34 91298.5 35 98225.0 36 105686.5 37 113130.0 38 118777.5 39 124190.0 40 129698.5 41 133811.5 42 136674.0 43 140714.5 44 144078.0 45 146980.5 46 149458.5 47 150565.0 48 151823.5 49 151620.5 50 150283.5 51 148172.5 52 143499.0 53 137682.0 54 130892.5 55 122887.5 56 114722.5 57 104867.5 58 93319.5 59 81076.0 60 68562.0 61 56390.5 62 45257.5 63 35506.5 64 26681.5 65 19675.0 66 14677.0 67 11212.0 68 8628.5 69 6290.5 70 4564.5 71 3369.5 72 2428.0 73 1714.0 74 1192.0 75 809.5 76 539.5 77 355.0 78 233.0 79 159.0 80 104.0 81 68.5 82 52.0 83 37.0 84 26.0 85 21.0 86 17.0 87 14.0 88 8.0 89 3.0 90 2.5 91 2.0 92 2.0 93 1.0 94 0.0 95 0.5 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 5.6173305883311185E-5 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0013762459941411241 20-21 0.0025700341323003015 22-23 0.004733289661596475 24-25 9.552916484330057E-4 26-27 0.0015459297847124126 28-29 0.0035581493010697794 30-31 0.007746825843749057 32-33 0.01310478660803781 34-35 1.7005183179833212E-4 36-37 7.835055834744712E-4 38-39 0.0015210138102314296 40-41 0.0021693740213411445 42-43 2.9170877604394184E-4 44-45 1.4730011411339841E-5 46-47 0.0032768249829902996 48-49 0.0030721845913075853 50-51 5.630173101954522E-4 52-53 9.98748491313577E-4 54-55 9.158103322653018E-4 56-57 0.0013498809907247478 58-59 6.668764681206056E-4 60-61 3.8548476395563265E-4 62-63 0.001607876842480691 64-65 3.77760298608019E-4 66-67 0.001629252056930722 68-69 0.0012461059190031153 70-71 5.801117226929468E-4 72-73 4.666075745617302E-4 74-75 0.0074381504662582735 76-77 0.0029083377076624057 78-79 0.005644143239727435 80-81 9.11697701464223E-5 82-83 0.004051681697665731 84-85 0.002139573781888095 86-87 5.526201053103362E-4 88-89 0.002866772556463797 90-91 7.494780772731621E-4 92-93 0.0 94-95 5.752793032381445E-4 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 88.0 20-21 314.0 22-23 603.0 24-25 1250.0 26-27 2074.0 28-29 4265.0 30-31 8610.0 32-33 11272.0 34-35 16482.0 36-37 24127.0 38-39 27303.0 40-41 28444.0 42-43 32163.0 44-45 37042.0 46-47 37344.0 48-49 35016.0 50-51 32100.0 52-53 32134.0 54-55 35239.0 56-57 36490.0 58-59 36227.0 60-61 34818.0 62-63 33915.0 64-65 36172.0 66-67 37987.0 68-69 38807.0 70-71 37864.0 72-73 36307.0 74-75 37369.0 76-77 37144.0 78-79 39298.0 80-81 39961.0 82-83 38304.0 84-85 39784.0 86-87 41624.0 88-89 45406.0 90-91 47612.0 92-93 51305.0 94-95 61779.0 96-97 134450.0 98-99 226363.0 100-101 2025554.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 89.0608364116943 #Duplication Level Percentage of deduplicated Percentage of total 1 92.04742558232535 81.97820711905082 2 5.9219691858410055 10.548310577905607 3 1.2249156335755507 3.27276032579997 4 0.3951872982531457 1.407828452868114 5 0.16812014064709596 0.7486460171841024 6 0.09029863932057523 0.48252434068370015 7 0.04425931641128334 0.2759240217019106 8 0.031029864368175116 0.22108365394968849 9 0.016429531183466618 0.13169050101463953 >10 0.05887006650485872 0.7852977909616938 >50 8.428767559381672E-4 0.05202119693946413 >100 6.518648135997445E-4 0.09570600194030589 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 5.617330588331119E-5 0.0 0.0 2.8086652941655596E-5 3 0.0 5.617330588331119E-5 0.0 0.0 2.8086652941655596E-5 4 0.0 8.425995882496679E-5 0.0 0.0 2.8086652941655596E-5 5 0.0 8.425995882496679E-5 0.0 0.0 2.8086652941655596E-5 6 0.0 8.425995882496679E-5 0.0 0.0 2.8086652941655596E-5 7 0.0 1.1234661176662238E-4 0.0 0.0 2.8086652941655596E-5 8 0.0 1.1234661176662238E-4 0.0 0.0 2.8086652941655596E-5 9 0.0 1.9660657059158916E-4 0.0 0.0 2.8086652941655596E-5 10-11 0.0 1.9660657059158916E-4 0.0 4.2129979412483396E-5 2.8086652941655596E-5 12-13 0.0 1.9660657059158916E-4 0.0 5.617330588331119E-5 2.8086652941655596E-5 14-15 0.0 2.3873655000407259E-4 0.0 7.021663235413899E-5 8.425995882496679E-5 16-17 0.0 2.527798764749004E-4 0.0 8.425995882496679E-5 1.1234661176662238E-4 18-19 0.0 2.527798764749004E-4 0.0 8.425995882496679E-5 1.1234661176662238E-4 20-21 0.0 2.527798764749004E-4 0.0 9.830328529579458E-5 1.1234661176662238E-4 22-23 0.0 2.9490985588738374E-4 0.0 1.1234661176662238E-4 1.263899382374502E-4 24-25 0.0 3.3703983529986717E-4 0.0 1.4043326470827798E-4 1.4043326470827798E-4 26-27 0.0 3.6512648824152275E-4 0.0 2.1064989706241698E-4 1.4043326470827798E-4 28-29 0.0 3.6512648824152275E-4 0.0 4.4938644706648954E-4 1.4043326470827798E-4 30-31 0.0 4.3534312059566175E-4 0.0 0.0013341160147286408 1.4043326470827798E-4 32-33 0.0 4.4938644706648954E-4 0.0 0.0032720950677028768 1.6851991764993358E-4 34-35 0.0 5.617330588331119E-4 0.0 0.006038630382455954 2.2469322353324477E-4 36-37 0.0 6.740796705997343E-4 0.0 0.009605635306046214 2.2469322353324477E-4 38-39 0.0 7.302529764830455E-4 0.0 0.015391485812027266 2.2469322353324477E-4 40-41 0.0 8.145129353080122E-4 0.0 0.02194971927390385 2.2469322353324477E-4 42-43 0.0 8.285562617788401E-4 0.0 0.02805856628871394 2.2469322353324477E-4 44-45 0.0 9.68989526487118E-4 0.0 0.034209543282936516 2.2469322353324477E-4 46-47 0.0 0.0010953794647245681 0.0 0.04175080959777104 3.089531823582116E-4 48-49 0.0 0.001109422791195396 0.0 0.048758429506714114 3.3703983529986717E-4 50-51 0.0 0.0012919860353161575 0.0 0.05621543586272368 3.3703983529986717E-4 52-53 0.0 0.0012919860353161575 0.0 0.06326518575107923 3.6512648824152275E-4 54-55 0.0 0.0013060293617869851 0.0 0.0706800621276763 4.0725646765400617E-4 56-57 0.0 0.0013481593411994687 0.0 0.07855836827781071 4.2129979412483396E-4 58-59 0.0 0.0013762459941411244 0.0 0.0862400678573535 4.2129979412483396E-4 60-61 0.0 0.0014324193000244353 0.0 0.09430093725160865 4.2129979412483396E-4 62-63 0.0 0.0014324193000244353 0.0 0.10153325038408498 4.2129979412483396E-4 64-65 0.0 0.0015166792588494021 0.0 0.1084144803547906 4.2129979412483396E-4 66-67 0.0 0.0015447659117910578 0.0 0.11560466350785442 4.2129979412483396E-4 68-69 0.0 0.0015868958912035411 0.0 0.12223311360208516 4.2129979412483396E-4 70-71 0.0 0.001600939217674369 0.0 0.1277661842315913 4.2129979412483396E-4 72-73 0.0 0.001600939217674369 0.0 0.13321499490227248 4.4938644706648954E-4 74-75 0.0 0.0016430691970868525 0.0 0.13709095300822097 4.4938644706648954E-4 76-77 0.0 0.001741372482382647 0.0 0.14075626121710702 4.4938644706648954E-4 78-79 0.0 0.001741372482382647 0.0 0.14321384334950188 4.4938644706648954E-4 80-81 0.0 0.001741372482382647 0.0 0.144182832875989 4.6342977353731733E-4 82-83 0.0 0.001741372482382647 0.0 0.1449833024848262 4.774731000081451E-4 84-85 0.0 0.001741372482382647 0.0 0.1452501256877719 4.774731000081451E-4 86-87 0.0 0.0017694591353243025 0.0 0.14537651562600937 4.774731000081451E-4 88 0.0 0.001881805747090925 0.0 0.14537651562600937 5.055597529498008E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 3985 0.0 47.980507 1 GTATCAA 7265 0.0 33.211166 1 TCAACGC 8390 0.0 28.313993 4 ATCAACG 8515 0.0 27.898344 3 CAACGCA 8640 0.0 27.542625 5 AACGCAG 8765 0.0 27.197046 6 TATCAAC 9105 0.0 26.40872 2 ACGCAGA 10300 0.0 23.063534 7 CGCAGAG 10715 0.0 22.131641 8 GTGGTAT 2195 0.0 20.928576 1 GTACATG 9615 0.0 20.23018 1 TACATGG 9760 0.0 19.42079 2 TGGTATC 2180 0.0 19.36399 2 GCAGAGT 12340 0.0 18.948921 9 ACATGGG 9760 0.0 18.69993 3 GAGTACT 7140 0.0 18.287674 12-13 CAGAGTA 11925 0.0 17.664877 10-11 CATGGGG 7330 0.0 17.502855 4 AGAGTAC 11040 0.0 16.887949 10-11 GTACTTT 8325 0.0 15.760461 14-15 >>END_MODULE