##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138712_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5455327 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.773320462733032 31.0 31.0 34.0 30.0 34.0 2 32.042299205895446 33.0 31.0 34.0 30.0 34.0 3 31.949996398016104 31.0 31.0 34.0 30.0 34.0 4 35.80068014254691 37.0 35.0 37.0 35.0 37.0 5 35.5817700753777 37.0 35.0 37.0 33.0 37.0 6 35.66487618432406 37.0 35.0 37.0 33.0 37.0 7 35.584974832856034 37.0 35.0 37.0 33.0 37.0 8 35.57077880024424 37.0 35.0 37.0 33.0 37.0 9 37.29500559728134 39.0 37.0 39.0 34.0 39.0 10-11 37.17009282853255 39.0 37.0 39.0 33.0 39.0 12-13 37.12959608104153 39.0 37.0 39.0 33.0 39.0 14-15 38.320072014014926 40.0 38.0 41.0 33.0 41.0 16-17 38.27376855686194 40.0 38.0 41.0 33.0 41.0 18-19 38.27044666616685 40.0 38.0 41.0 33.5 41.0 20-21 38.270064448715175 40.0 38.0 41.0 33.0 41.0 22-23 38.203450318739314 40.0 38.0 41.0 33.0 41.0 24-25 38.12228734393454 40.0 37.0 41.0 33.0 41.0 26-27 37.952475030414924 40.0 37.0 41.0 33.0 41.0 28-29 37.80172451691286 40.0 37.0 41.0 32.5 41.0 30-31 37.644733133977454 40.0 37.0 41.0 32.0 41.0 32-33 37.48298024508135 39.0 36.0 41.0 32.0 41.0 34-35 37.35590500616978 39.0 36.0 41.0 31.0 41.0 36-37 37.4490105045855 39.0 36.0 41.0 31.5 41.0 38-39 37.417726189584776 39.0 36.0 41.0 31.0 41.0 40-41 37.38259090582215 39.0 36.0 41.0 31.0 41.0 42-43 37.46456696299444 39.5 36.0 41.0 31.5 41.0 44-45 37.501943609349155 40.0 36.0 41.0 32.0 41.0 46-47 37.38389411257202 39.5 36.0 41.0 31.0 41.0 48-49 37.32278443816597 39.0 36.0 41.0 31.0 41.0 50-51 37.22713709486548 39.0 36.0 41.0 31.0 41.0 52-53 37.07783686360122 39.0 35.5 41.0 31.0 41.0 54-55 36.902629531927985 39.0 35.0 40.5 31.0 41.0 56-57 36.76783514112072 39.0 35.0 40.0 31.0 41.0 58-59 36.50915353978215 38.0 35.0 40.0 30.0 41.0 60-61 36.3486190272256 38.0 35.0 40.0 30.0 41.0 62-63 36.088826141785056 38.0 34.0 40.0 29.5 41.0 64-65 35.78234838734764 37.0 34.0 40.0 29.0 41.0 66-67 35.453403466289174 37.0 34.0 39.5 29.0 41.0 68-69 35.2224191959079 36.0 34.0 39.0 29.0 41.0 70-71 34.89824680650078 36.0 33.5 39.0 29.0 40.0 72-73 34.60469595560479 35.0 33.0 38.5 28.0 40.0 74-75 34.319813430874405 35.0 33.0 37.5 28.0 39.5 76-77 32.963138975224425 34.0 31.5 36.0 26.5 39.0 78-79 33.713063266409065 35.0 32.5 36.0 28.0 39.0 80-81 33.74088263844992 35.0 33.0 36.0 29.0 38.5 82-83 33.50362398174392 35.0 33.0 36.0 29.0 37.0 84-85 33.30051823221174 35.0 33.0 35.5 29.0 37.0 86-87 33.12848525471482 35.0 33.0 35.0 28.5 36.5 88-89 33.01111744529953 35.0 32.0 35.0 28.5 36.0 90-91 32.875370450685644 35.0 32.0 35.0 28.0 36.0 92-93 32.86745518389083 34.0 32.0 35.0 29.0 36.0 94-95 32.80583576845329 34.0 32.0 35.0 29.0 35.0 96-97 32.905421374614576 34.0 32.0 35.0 29.0 35.0 98-99 33.031402331179706 34.0 32.0 35.0 29.0 35.0 100 31.965622972221453 34.0 31.0 35.0 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 7.0 20 45.0 21 301.0 22 1294.0 23 4291.0 24 11143.0 25 23329.0 26 40826.0 27 63807.0 28 90209.0 29 117563.0 30 147627.0 31 180167.0 32 220028.0 33 270909.0 34 349769.0 35 466288.0 36 679191.0 37 1045412.0 38 1150857.0 39 572529.0 40 19732.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.006941105455276 20.036177483036305 13.579992546734596 24.376888864773825 2 15.695594416246724 21.085775426477642 39.555685662839274 23.662944494436356 3 18.7907790458991 25.233671242388617 30.159583847969156 25.815965863743134 4 13.214093307330616 17.243750924555027 37.534688571372534 32.00746719674183 5 13.574713303162211 37.53292882351507 35.26661188229413 13.625745991028584 6 31.538256093539395 36.92062822265283 17.915351362072336 13.625764321735435 7 27.628297992036043 32.067940198635206 22.346836404123895 17.956925405204856 8 25.393216575285038 36.096919579706224 20.62800268434871 17.88186116066003 9 25.88972210098496 16.18352117114153 20.876988675472617 37.04976805240089 10-11 25.007758471673654 26.292667698929872 28.282310116332166 20.41726371306431 12-13 25.33591478567646 23.759180705391262 28.623902838454963 22.281001670477316 14-15 22.45745305460149 25.286916806270277 26.02786230779566 26.227767831332567 16-17 22.301046298416207 28.395658042130194 26.787019366575095 22.5162762928785 18-19 22.292073519411932 27.6425627142493 28.38758041695511 21.677783349383652 20-21 22.977833711127875 26.81678232709827 28.29953958868211 21.90584437309174 22-23 22.778220915614956 26.71005495897214 28.109289799830755 22.402434325582156 24-25 22.55081896263205 26.847459212332442 28.188911109338367 22.412810715697145 26-27 22.49861476023426 27.02356925831878 28.149044459774842 22.328771521672124 28-29 22.466124561724037 27.062194561017105 28.15985148882999 22.311829388428873 30-31 22.68830819589872 26.941426754657193 27.99378513885215 22.376479910591936 32-33 22.40612355841429 27.148641546726903 27.993337412581443 22.451897482277364 34-35 22.59898432779785 27.14103166779836 27.99657194888077 22.26341205552302 36-37 22.619482637723607 27.103884083659135 27.887515324259372 22.389117954357886 38-39 22.47468790335862 27.219977341691298 27.99494260687421 22.310392148075874 40-41 22.703724480784285 27.056851180520745 27.843789164748618 22.395635173946353 42-43 22.524431091556178 27.210486910173287 27.64880725306392 22.616274745206617 44-45 22.575675614725995 27.27516102703059 27.541083440016855 22.608079918226558 46-47 22.720856472451626 27.240154154063895 27.33221729763849 22.706772075845997 48-49 22.592070665884954 27.37347566707905 27.295509672674783 22.738943994361208 50-51 22.59078209487261 27.46185466033487 27.227764107051822 22.719599137740705 52-53 22.81989451568823 27.31918895366826 27.100540812527452 22.76037571811605 54-55 22.747720580482188 27.24586877649647 27.198614644657543 22.8077959983638 56-57 22.684393938796184 27.39826790118868 27.159231703774516 22.758106456240615 58-59 22.6459848585126 27.42224319803757 27.185192887376235 22.74657905607359 60-61 22.734101007804274 27.38449488327018 27.24676993589371 22.63463417303184 62-63 22.789626213476122 27.50449986284388 27.085360237912536 22.62051368576746 64-65 22.67949394038383 27.42356016288405 27.13620625435936 22.76073964237276 66-67 22.787438976497405 27.407026030025655 26.999018141556284 22.806516851920648 68-69 22.67490771855521 27.403122696046093 27.1200859163956 22.801883669003097 70-71 22.67489616504648 27.21324922412231 27.182682450898216 22.929172159932996 72-73 22.762555480344034 27.29473295612827 27.034667312719947 22.908044250807748 74-75 22.57044159043935 27.391305008326704 27.119073074571986 22.919180326661962 76-77 22.73961583038564 27.23716736759636 27.08649820566186 22.93671859635613 78-79 22.639960301348854 27.243403858588593 27.105360821641778 23.011275018420775 80-81 22.73641406196934 27.317913075602558 27.05055319123983 22.89511967118827 82-83 22.70767103050184 27.30212079212246 27.161920259566447 22.828287917809252 84-85 22.76906938348064 27.264120191387754 27.100529495359638 22.866280929771968 86-87 22.64258445497849 27.24151541597305 27.248589373429343 22.86731075561912 88-89 22.687389940713295 27.162432992429235 27.21773906830855 22.932437998548917 90-91 22.689902396043195 27.203734403002684 27.275384008750198 22.830979192203927 92-93 22.765594915131917 27.115490964660644 27.269340652156863 22.849573468050572 94-95 22.603172428808847 27.20069116193108 27.340432611015657 22.85570379824442 96-97 22.58601620784653 27.26965869297306 27.47207004823285 22.672255050947566 98-99 23.7271068712497 29.269587126807384 27.598288128493653 19.405017873449264 100 30.588642939545085 40.871012026048334 28.540345034406585 0.0 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 896.0 1 849.0 2 1229.5 3 1767.5 4 2420.0 5 3887.0 6 5261.5 7 6418.5 8 7264.5 9 7276.0 10 6569.5 11 5721.0 12 5952.0 13 7774.5 14 12167.5 15 18107.5 16 23003.5 17 26140.5 18 27353.5 19 26767.5 20 25328.5 21 23983.5 22 23431.5 23 24788.0 24 28691.5 25 35198.5 26 44232.0 27 54051.5 28 64122.0 29 76222.0 30 88124.5 31 98835.5 32 110679.5 33 122270.0 34 133257.5 35 144881.5 36 157689.5 37 169826.5 38 179300.0 39 185857.0 40 193740.5 41 202950.5 42 208991.5 43 214840.0 44 221547.0 45 227528.0 46 230709.5 47 233417.0 48 235910.0 49 236832.0 50 237578.5 51 235734.0 52 229781.5 53 221594.5 54 212202.0 55 200409.0 56 187046.5 57 172136.0 58 154948.5 59 135917.0 60 117239.5 61 98581.5 62 80111.0 63 63338.0 64 49170.0 65 38954.5 66 30604.0 67 23198.0 68 17556.5 69 13258.5 70 9563.0 71 6736.0 72 4764.0 73 3277.0 74 2206.0 75 1500.0 76 1032.0 77 683.5 78 469.5 79 305.5 80 199.0 81 137.0 82 95.5 83 69.0 84 52.5 85 41.5 86 31.5 87 25.5 88 18.0 89 13.0 90 8.5 91 3.5 92 1.5 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 2.3829918903119833E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0016039368492484502 20-21 0.0032355153630610287 22-23 0.005151765795226844 24-25 0.0011553277664873526 26-27 0.0017613334468414886 28-29 0.004296503545808898 30-31 0.008248891020746467 32-33 0.014600874982567496 34-35 2.407853752149241E-4 36-37 0.0010900859108818432 38-39 0.0021889337281054957 40-41 0.0027588477004198567 42-43 3.637738318528217E-4 44-45 1.935740575145304E-5 46-47 0.003920346401808063 48-49 0.003839613300341101 50-51 8.730901278896398E-4 52-53 0.0012072015353980401 54-55 0.0011795444025130654 56-57 0.0016195727442518146 58-59 7.990277934458483E-4 60-61 4.364428967162143E-4 62-63 0.0018208140159152075 64-65 5.56250201777034E-4 66-67 0.00181269690281944 68-69 0.0017035939331433527 70-71 4.5469147251151333E-4 72-73 8.183172124842474E-4 74-75 0.008471472870137345 76-77 0.0034732125224365973 78-79 0.006603975809961394 80-81 9.773255583827412E-5 82-83 0.004914285430632876 84-85 0.002760469521832478 86-87 8.714219478894801E-4 88-89 0.003822614010441346 90-91 0.0010246959713745192 92-93 8.154570426064072E-5 94-95 6.821363117168048E-4 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 167.0 20-21 518.0 22-23 1045.0 24-25 2434.0 26-27 3473.0 28-29 7074.0 30-31 15196.0 32-33 20035.0 34-35 28999.0 36-37 41935.0 38-39 48566.0 40-41 50024.0 42-43 54401.0 44-45 63708.0 46-47 63296.0 48-49 58596.0 50-51 54143.0 52-53 52694.0 54-55 57815.0 56-57 60593.0 58-59 59157.0 60-61 56793.0 62-63 55898.0 64-65 59499.0 66-67 62543.0 68-69 62550.0 70-71 61289.0 72-73 58960.0 74-75 61050.0 76-77 60504.0 78-79 63465.0 80-81 64151.0 82-83 62092.0 84-85 64317.0 86-87 67815.0 88-89 73949.0 90-91 77528.0 92-93 84293.0 94-95 97446.0 96-97 209787.0 98-99 1108386.0 100-101 2199143.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.02936824996783 #Duplication Level Percentage of deduplicated Percentage of total 1 91.63166446312144 80.66277534381608 2 6.064403162141281 10.676911583528085 3 1.3650931120622427 3.6050485277166526 4 0.43520969835561346 1.532449392100149 5 0.1943965334015483 0.8556302012661033 6 0.10228100604666433 0.54022394077554 7 0.05759825179322026 0.35492364023618295 8 0.03652189654422634 0.2571999584063143 9 0.025645873703026015 0.2031831054266259 >10 0.08538428988004822 1.1780014587108003 >50 0.0015532331863777303 0.08888670312909647 >100 2.180587528326149E-4 0.031055079712057048 >500 3.042101142474859E-5 0.013711065176297844 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.8330706848553717E-5 2 0.0 3.6661413697107435E-5 0.0 0.0 1.8330706848553717E-5 3 0.0 3.6661413697107435E-5 0.0 0.0 1.8330706848553717E-5 4 0.0 1.099842410913223E-4 0.0 3.6661413697107435E-5 1.8330706848553717E-5 5 0.0 1.099842410913223E-4 0.0 3.6661413697107435E-5 1.8330706848553717E-5 6 9.165353424276858E-5 1.099842410913223E-4 0.0 3.6661413697107435E-5 3.6661413697107435E-5 7 9.165353424276858E-5 1.099842410913223E-4 0.0 3.6661413697107435E-5 3.6661413697107435E-5 8 9.165353424276858E-5 1.4664565478842974E-4 0.0 3.6661413697107435E-5 5.499212054566115E-5 9 9.165353424276858E-5 3.666141369710743E-4 0.0 3.6661413697107435E-5 7.332282739421487E-5 10-11 9.165353424276858E-5 3.666141369710743E-4 0.0 3.6661413697107435E-5 7.332282739421487E-5 12-13 9.165353424276858E-5 3.666141369710743E-4 0.0 3.6661413697107435E-5 7.332282739421487E-5 14-15 9.165353424276858E-5 4.399369643652892E-4 0.0 3.6661413697107435E-5 9.165353424276858E-5 16-17 1.2831494793987601E-4 4.582676712138429E-4 0.0 3.6661413697107435E-5 9.165353424276858E-5 18-19 1.2831494793987601E-4 5.22425145183781E-4 0.0 3.6661413697107435E-5 9.165353424276858E-5 20-21 1.2831494793987601E-4 5.86582619153719E-4 0.0 6.415747396993801E-5 9.165353424276858E-5 22-23 1.2831494793987601E-4 6.507400931236569E-4 0.0 1.0998424109132229E-4 1.1914959451559917E-4 24-25 1.2831494793987601E-4 6.690707999722106E-4 0.0 1.4664565478842974E-4 1.4664565478842974E-4 26-27 1.2831494793987601E-4 6.874015068207644E-4 0.0 1.92472421909814E-4 1.4664565478842974E-4 28-29 1.2831494793987601E-4 6.965668602450412E-4 0.0 5.682519123051652E-4 1.4664565478842974E-4 30-31 1.2831494793987601E-4 7.515589807907024E-4 0.0 0.0016955903834912187 1.4664565478842974E-4 32-33 1.2831494793987601E-4 7.515589807907024E-4 0.0 0.0042527239888644625 1.4664565478842974E-4 34-35 1.2831494793987601E-4 9.257006958519626E-4 0.0 0.007488093747634193 1.6497636163698343E-4 36-37 1.2831494793987601E-4 0.001099842410913223 0.0 0.012318235002228096 1.6497636163698343E-4 38-39 1.2831494793987601E-4 0.0011181731177617768 0.0 0.020182108240257644 1.741417150612603E-4 40-41 1.2831494793987601E-4 0.0011914959451559915 0.0 0.027963493297468694 1.8330706848553716E-4 42-43 1.2831494793987601E-4 0.0012189920054288222 0.0 0.03500248472731332 1.8330706848553716E-4 44-45 1.2831494793987601E-4 0.0013289762465201445 0.0 0.04368207442010351 1.92472421909814E-4 46-47 1.2831494793987601E-4 0.0014114644273386361 0.0 0.05293908137862313 2.0163777533409088E-4 48-49 1.2831494793987601E-4 0.0014114644273386361 0.0 0.0619027970275659 2.382991890311983E-4 50-51 1.3748030136415286E-4 0.00160393684924845 0.0 0.07030742611762777 2.382991890311983E-4 52-53 1.4664565478842974E-4 0.0016314329095212807 0.0 0.07858374025974979 2.4746454245547515E-4 54-55 1.4664565478842974E-4 0.0016497636163698343 0.0 0.0864201174375065 2.657952493040289E-4 56-57 1.4664565478842974E-4 0.0016680943232183882 0.0 0.09487057329468976 2.749606027283057E-4 58-59 1.4664565478842974E-4 0.001677259676642665 0.0 0.10341268268611578 2.749606027283057E-4 60-61 1.4664565478842974E-4 0.0017047557369154957 0.0 0.11296298095421228 2.749606027283057E-4 62-63 1.4664565478842974E-4 0.001741417150612603 0.0 0.12090934237306031 2.749606027283057E-4 64-65 1.558110082127066E-4 0.00207136987388657 0.0 0.12892902661930256 2.749606027283057E-4 66-67 1.741417150612603E-4 0.0020897005807351235 0.0 0.13776442732030547 2.749606027283057E-4 68-69 1.8330706848553716E-4 0.0021263619944322312 0.0 0.14597658398845753 2.749606027283057E-4 70-71 2.1080312875836776E-4 0.0021721887615536156 0.0 0.15234650461832994 2.749606027283057E-4 72-73 2.5662989587975203E-4 0.002181354114977892 0.0 0.15789154344001743 3.8494484381962807E-4 74-75 2.5662989587975203E-4 0.002208850175250723 0.0 0.1619792910672449 3.8494484381962807E-4 76-77 2.749606027283057E-4 0.0022913383560692144 0.0 0.16655280242595905 3.8494484381962807E-4 78-79 2.749606027283057E-4 0.002327999769766322 0.0 0.1692840777463936 3.8494484381962807E-4 80-81 2.749606027283057E-4 0.002327999769766322 0.0 0.17034725874360968 3.8494484381962807E-4 82-83 2.749606027283057E-4 0.002327999769766322 0.0 0.1709338413627634 4.0327555066818177E-4 84-85 2.749606027283057E-4 0.0023646611834634295 0.0 0.1712088019654917 4.0327555066818177E-4 86-87 2.749606027283057E-4 0.002382991890311983 0.0 0.17126379408603737 4.0327555066818177E-4 88 2.932913095768595E-4 0.0024746454245547517 0.0 0.17126379408603737 4.2160625751673546E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5945 0.0 45.96111 1 GTATCAA 10525 0.0 34.40792 1 TCAACGC 12425 0.0 28.457075 4 ATCAACG 12660 0.0 27.961056 3 CAACGCA 12820 0.0 27.61209 5 TATCAAC 13160 0.0 27.2086 2 AACGCAG 13265 0.0 26.839508 6 CGTACGG 135 8.752615E-5 26.216005 84-85 ACGCAGA 15620 0.0 22.792963 7 CGCAGAG 16155 0.0 21.987648 8 GTACATG 15830 0.0 21.047895 1 TACATGG 15765 0.0 20.436226 2 GTGGTAT 3205 0.0 19.341187 1 ACATGGG 16630 0.0 19.201584 3 GCAGAGT 19035 0.0 18.489511 9 GAGTACT 10470 0.0 17.82034 12-13 CATGGGG 12365 0.0 17.480316 4 TGGTATC 3250 0.0 17.191143 2 AGAGTAC 16655 0.0 16.871052 10-11 GAGTACA 11580 0.0 16.763548 1 >>END_MODULE