##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138711_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3766102 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.17873413943648 33.0 31.0 34.0 30.0 34.0 2 32.40479811752311 34.0 31.0 34.0 30.0 34.0 3 32.34295645736626 34.0 31.0 34.0 30.0 34.0 4 35.31815176540625 35.0 34.0 37.0 34.0 37.0 5 35.1502604018691 35.0 34.0 37.0 33.0 37.0 6 36.04731629679706 37.0 35.0 37.0 35.0 38.0 7 35.984224537731585 37.0 35.0 37.0 33.0 38.0 8 35.94190837104252 37.0 35.0 37.0 33.0 38.0 9 37.26903971267905 38.0 37.0 39.0 34.0 39.0 10-11 37.18009602501472 38.0 37.0 39.0 34.0 39.0 12-13 37.12516070993297 38.0 37.0 39.0 34.0 39.0 14-15 38.06471877288507 38.5 38.0 41.0 34.0 41.0 16-17 38.004228775535026 38.0 38.0 41.0 34.0 41.0 18-19 38.02418256329754 38.5 38.0 41.0 34.0 41.0 20-21 38.017814504443066 39.0 38.0 41.0 34.0 41.0 22-23 37.96285945887957 39.0 38.0 41.0 34.0 41.0 24-25 37.89532494927499 38.5 38.0 41.0 34.0 41.0 26-27 37.74607451036153 38.0 37.0 41.0 33.5 41.0 28-29 37.607990261061644 38.0 37.0 40.0 33.0 41.0 30-31 37.50838083415032 38.0 37.0 40.0 33.0 41.0 32-33 37.36563205002197 38.0 37.0 40.0 33.0 41.0 34-35 37.266098861711384 38.0 37.0 40.0 32.5 41.0 36-37 37.323417611980645 38.0 37.0 40.0 33.0 41.0 38-39 37.30951656156446 38.0 37.0 40.0 33.0 41.0 40-41 37.28167703795369 38.0 37.0 40.0 33.0 41.0 42-43 37.347605413300556 38.0 37.0 40.0 33.0 41.0 44-45 37.34839312734775 38.0 37.0 40.0 33.0 41.0 46-47 37.246086346541574 38.0 37.0 40.0 32.0 41.0 48-49 37.196258994303946 38.0 37.0 40.0 32.0 41.0 50-51 37.133123206942656 38.0 37.0 40.0 32.0 41.0 52-53 37.02144659773579 38.0 36.0 40.0 31.5 41.0 54-55 36.883944700661786 38.0 36.0 40.0 31.0 41.0 56-57 36.77983676334236 38.0 36.0 40.0 31.0 41.0 58-59 36.59600977370151 38.0 35.5 40.0 31.0 41.0 60-61 36.467563081265126 38.0 35.0 40.0 31.0 41.0 62-63 36.29187301652019 38.0 35.0 39.5 31.0 41.0 64-65 36.05142202226964 38.0 35.0 39.0 30.0 41.0 66-67 35.79515659092695 38.0 35.0 39.0 30.0 41.0 68-69 35.60135539120716 37.0 34.0 39.0 30.0 40.0 70-71 35.36814450459893 37.0 34.0 38.0 29.0 40.0 72-73 35.12524309967009 36.5 34.0 38.0 29.0 40.0 74-75 34.91415328783974 36.0 34.0 38.0 29.0 39.0 76-77 33.87852316232326 35.0 32.5 38.0 27.5 38.5 78-79 34.43781899353125 35.0 33.5 38.0 29.0 39.0 80-81 34.4358701337092 35.0 34.0 38.0 29.0 38.0 82-83 34.255618470921725 35.0 34.0 37.5 29.0 38.0 84-85 34.08429667345712 35.0 34.0 37.0 29.0 38.0 86-87 33.94793559182883 35.0 33.0 37.0 29.0 38.0 88-89 33.86005807920212 35.0 33.0 37.0 29.0 38.0 90-91 33.73574795870592 35.0 33.0 36.0 29.0 38.0 92-93 33.74681752704646 35.0 33.0 36.0 29.0 38.0 94-95 33.67371858883957 35.0 33.0 36.0 29.0 38.0 96-97 33.75899746615369 35.0 33.0 36.0 29.0 38.0 98-99 33.83512444110494 35.0 33.0 36.0 29.0 38.0 100 32.94845449582781 34.0 31.0 35.0 27.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 1.0 16 3.0 17 13.0 18 32.0 19 42.0 20 143.0 21 369.0 22 1138.0 23 3075.0 24 7274.0 25 14274.0 26 24357.0 27 37491.0 28 51990.0 29 67621.0 30 86241.0 31 107742.0 32 133804.0 33 169488.0 34 222890.0 35 303489.0 36 461328.0 37 1118229.0 38 628120.0 39 316106.0 40 10842.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.859939003245266 20.072345358675893 13.61694399142668 24.45077164665216 2 15.44111126039603 21.06007750188391 39.94655481981104 23.55225641790902 3 18.750912749389688 25.21968384219831 30.15615117413426 25.873252234277743 4 13.036609204955148 17.27109356039746 37.86201223440045 31.83028500024694 5 13.48927883525194 37.53414007374203 35.42639046950932 13.55019062149671 6 31.315402503702767 37.1211932125046 18.03055254477972 13.53285173901291 7 27.313492836890767 32.15345734130409 22.5541156346801 17.97893418712504 8 25.058827402975275 36.472352580997544 20.743782297983433 17.725037718043748 9 25.567602789303105 16.440420360361987 21.023673814463866 36.968303035871045 10-11 24.70108350756299 26.49662701647486 28.50901276704667 20.293276708915478 12-13 25.090318849569133 23.950028437891486 28.80470311213026 22.154949600409125 14-15 22.216445545022413 25.523923674929677 26.143078440254676 26.11655233979324 16-17 22.068839346358647 28.595733732118777 26.991156904406733 22.344270017115843 18-19 22.122568858204257 27.862302576874555 28.497370391214467 21.517758173706728 20-21 22.73253166254413 27.106417216670188 28.43599844392487 21.725052676860816 22-23 22.518644161420383 27.02196401986232 28.256693228721012 22.202698589996288 24-25 22.307163230475812 27.081764843453364 28.345038600621713 22.266033325449104 26-27 22.224939762061304 27.269422907461482 28.301262894346436 22.20437443613078 28-29 22.25176805274912 27.337046687227478 28.27124322024886 22.13994203977454 30-31 22.479971817957427 27.14926018144187 28.15267296715317 22.21809503344754 32-33 22.24577439301726 27.339971877123887 28.165448912044123 22.248804817814733 34-35 22.426627816369642 27.363802448704856 28.109327822693448 22.100241912232054 36-37 22.392555879672717 27.273758527385983 28.096291897292524 22.237393695648777 38-39 22.179903225048804 27.435091801254703 28.18817203790137 22.196832935795126 40-41 22.49726693820693 27.25216475194915 27.984636263903845 22.26593204594008 42-43 22.3547075951601 27.378018619544363 27.869274879523115 22.397998905772422 44-45 22.422585296415697 27.423225485030045 27.743794005993504 22.41039521256075 46-47 22.50021090385634 27.417148641934347 27.587719780863136 22.494920673346183 48-49 22.349116761031482 27.579512194425998 27.57356282399637 22.49780822054616 50-51 22.383364861345484 27.64781225205759 27.51433613658171 22.454486750015214 52-53 22.575949755245617 27.533342258301495 27.389576462673848 22.501131523779044 54-55 22.511062997150404 27.44126708797539 27.45482397900492 22.59284593586928 56-57 22.454935223571436 27.587975103077095 27.479061487728718 22.478028185622748 58-59 22.454587062943702 27.64930519042444 27.42000703261367 22.476100714018195 60-61 22.52633087448918 27.539720229932545 27.47382920320186 22.460119692376416 62-63 22.489672664961326 27.651751838009652 27.442429386441873 22.416146110587146 64-65 22.470901009455574 27.592451266639916 27.406278879808205 22.530368844096305 66-67 22.53265558757941 27.572210064954145 27.287834257292726 22.60730009017372 68-69 22.43812946047891 27.661211022424347 27.36525416567438 22.535405351422362 70-71 22.445773538946558 27.46253407651627 27.400065193382712 22.69162719115446 72-73 22.490811547517424 27.492825679958628 27.34644786551247 22.66991490701148 74-75 22.331759690219172 27.645159840982725 27.353949888591394 22.66913058020671 76-77 22.54007605783525 27.537391504941468 27.259914633916022 22.66261780330726 78-79 22.419350867750538 27.599524424696813 27.22962682315834 22.751497884394308 80-81 22.481155123055807 27.578767613902627 27.298960518287448 22.641116744754118 82-83 22.45607774176797 27.559680582032065 27.35511272700653 22.62912894919344 84-85 22.527312844534574 27.55317971494673 27.313076604495727 22.606430836022966 86-87 22.429679469885745 27.564731015717136 27.392461638447017 22.613127875950102 88-89 22.429832893683237 27.56649389372135 27.32851758898058 22.675155623614835 90-91 22.45769015308923 27.56320012890147 27.394841318167423 22.58426839984187 92-93 22.43159915648771 27.56862028951989 27.421648711212683 22.57813184277972 94-95 22.32066014598483 27.61626287399604 27.418207390409105 22.644869589610025 96-97 22.42518318542221 27.66563369802906 27.47671215652858 22.432470960020147 98-99 23.471975082623075 29.68692432382496 27.658700926743325 19.182399666808642 100 30.048568977618338 41.033393121734385 28.918037900647274 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 671.0 1 579.5 2 685.0 3 948.0 4 1284.5 5 1998.5 6 2660.5 7 3217.5 8 3665.5 9 3711.0 10 3401.0 11 3128.0 12 3385.0 13 4389.5 14 6595.5 15 9477.0 16 11980.5 17 13722.0 18 14479.0 19 14517.0 20 14431.0 21 14512.0 22 15268.0 23 17147.0 24 20230.0 25 25011.0 26 31240.5 27 38317.5 28 46224.0 29 55050.0 30 63664.0 31 71737.5 32 80003.0 33 88006.5 34 95977.5 35 103998.5 36 112444.5 37 120538.0 38 127423.0 39 132983.5 40 139177.5 41 144929.5 42 148445.5 43 152882.0 44 157364.0 45 160263.0 46 162323.0 47 163803.0 48 164143.5 49 163044.0 50 161773.5 51 159307.0 52 153631.5 53 147242.0 54 140145.5 55 131141.0 56 121670.0 57 111906.0 58 101189.5 59 88234.5 60 74602.0 61 61839.0 62 49872.5 63 38921.5 64 29375.0 65 22172.0 66 16786.5 67 12742.5 68 9654.5 69 7078.0 70 5125.0 71 3677.5 72 2535.0 73 1703.5 74 1127.5 75 759.5 76 531.5 77 362.0 78 241.0 79 166.5 80 121.0 81 78.5 82 51.0 83 39.0 84 28.5 85 19.5 86 15.5 87 13.0 88 9.5 89 6.0 90 3.5 91 2.0 92 1.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 2.124212249163724E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0012612510229409613 20-21 0.00252258376305769 22-23 0.003571754354121254 24-25 7.835471044614377E-4 26-27 0.0012354985023898262 28-29 0.0031637837684067743 30-31 0.005990721570431716 32-33 0.01087897586522564 34-35 1.875700540657283E-4 36-37 6.062564861023784E-4 38-39 0.0014933764004985705 40-41 0.0020396589087989104 42-43 3.176066927187009E-4 44-45 2.7894920948583525E-5 46-47 0.0028919090450874015 48-49 0.0027249371409788317 50-51 6.489181309023611E-4 52-53 9.905742490026884E-4 54-55 0.0010156525302554057 56-57 0.0011315572252311055 58-59 5.42358009919728E-4 60-61 3.201543570873637E-4 62-63 0.0014649581245575248 64-65 2.808022082285655E-4 66-67 0.0016587392097039719 68-69 9.602661089441107E-4 70-71 4.5408120074637976E-4 72-73 3.6142539604830615E-4 74-75 0.0056075571900114935 76-77 0.002124663805677574 78-79 0.0052143695716062016 80-81 1.387499943632815E-4 82-83 0.004205562251999402 84-85 0.002356346748562807 86-87 5.979023411681489E-4 88-89 0.002522393143509441 90-91 5.808026730412571E-4 92-93 1.908225788908247E-5 94-95 5.649234363162784E-4 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 86.0 20-21 245.0 22-23 585.0 24-25 1142.0 26-27 1931.0 28-29 4127.0 30-31 9409.0 32-33 12600.0 34-35 18409.0 36-37 26889.0 38-39 30636.0 40-41 31058.0 42-43 34426.0 44-45 40002.0 46-47 40113.0 48-49 38251.0 50-51 35312.0 52-53 34841.0 54-55 38056.0 56-57 39321.0 58-59 39439.0 60-61 37629.0 62-63 36923.0 64-65 39275.0 66-67 41035.0 68-69 41127.0 70-71 40018.0 72-73 38627.0 74-75 39625.0 76-77 39923.0 78-79 41653.0 80-81 41835.0 82-83 40511.0 84-85 40976.0 86-87 42914.0 88-89 46407.0 90-91 48122.0 92-93 51603.0 94-95 60656.0 96-97 136633.0 98-99 780857.0 100-101 1602875.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 91.24336079858728 #Duplication Level Percentage of deduplicated Percentage of total 1 93.64699283275293 85.44666354741591 2 4.875403936495037 8.896964808329386 3 0.8978056777213367 2.4575642213804425 4 0.28305973679748697 1.03309286768665 5 0.11811078735728185 0.5388412592522843 6 0.05698926559420884 0.31199352733553476 7 0.03450493682587097 0.22038424800947834 8 0.021495102062151532 0.15690282822874796 9 0.013879246906657233 0.11397502198051221 >10 0.05037444524757814 0.6960805788778107 >50 8.094387648596669E-4 0.04846350739894132 >100 5.74593474630745E-4 0.07907358410430945 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 7.965795934363966E-5 0.0 0.0 0.0 3 0.0 7.965795934363966E-5 0.0 0.0 0.0 4 0.0 1.062106124581862E-4 0.0 0.0 0.0 5 0.0 1.062106124581862E-4 0.0 0.0 0.0 6 0.0 1.062106124581862E-4 0.0 0.0 0.0 7 0.0 1.062106124581862E-4 0.0 0.0 0.0 8 0.0 1.3276326557273277E-4 0.0 0.0 0.0 9 0.0 1.8586857180182586E-4 0.0 2.655265311454655E-5 0.0 10-11 0.0 1.8586857180182586E-4 0.0 2.655265311454655E-5 0.0 12-13 0.0 1.8586857180182586E-4 0.0 7.965795934363966E-5 0.0 14-15 0.0 2.6552653114546553E-4 0.0 7.965795934363966E-5 0.0 16-17 0.0 2.6552653114546553E-4 0.0 7.965795934363966E-5 2.655265311454655E-5 18-19 0.0 2.788028577027388E-4 0.0 7.965795934363966E-5 2.655265311454655E-5 20-21 0.0 3.1863183737455863E-4 0.0 1.062106124581862E-4 2.655265311454655E-5 22-23 0.0 3.9828979671819827E-4 0.0 1.725922452445526E-4 5.31053062290931E-5 24-25 0.0 5.576057154054776E-4 0.0 1.8586857180182586E-4 5.31053062290931E-5 26-27 0.0 6.372636747491173E-4 0.0 1.8586857180182586E-4 5.31053062290931E-5 28-29 0.0 6.372636747491173E-4 0.0 4.248424498327449E-4 5.31053062290931E-5 30-31 0.0 6.638163278636639E-4 0.0 0.001593159186872793 5.31053062290931E-5 32-33 0.0 6.638163278636639E-4 0.0 0.0040758322530828955 5.31053062290931E-5 34-35 0.0 7.301979606500301E-4 0.0 0.007527677157973948 5.31053062290931E-5 36-37 0.0 7.965795934363965E-4 0.0 0.012731997168425071 5.31053062290931E-5 38-39 0.0 7.965795934363965E-4 0.0 0.01974189759066536 7.965795934363966E-5 40-41 0.0 9.293428590091293E-4 0.0 0.026884561278478384 7.965795934363966E-5 42-43 0.0 9.691718386809491E-4 0.0 0.034133435578749594 7.965795934363966E-5 44-45 0.0 0.0010621061245818621 0.0 0.04241786335048811 9.293428590091293E-5 46-47 0.0 0.0011417640839255017 0.0 0.051724568267136686 1.062106124581862E-4 48-49 0.0 0.001155040410482775 0.0 0.06121714175558708 1.5931591868727931E-4 50-51 0.0 0.0012745273494982345 0.0 0.06979364871158561 1.5931591868727931E-4 52-53 0.0 0.0013010800026127811 0.0 0.07807807648332414 1.9914489835909914E-4 54-55 0.0 0.001340908982284601 0.0 0.08701304425636905 2.3897387803091896E-4 56-57 0.0 0.001354185308841874 0.0 0.09560282753892486 2.3897387803091896E-4 58-59 0.0 0.001354185308841874 0.0 0.10395363694344975 2.3897387803091896E-4 60-61 0.0 0.001354185308841874 0.0 0.11230444634797465 2.3897387803091896E-4 62-63 0.0 0.001354185308841874 0.0 0.12100044024298864 2.3897387803091896E-4 64-65 0.0 0.0014603959213000603 0.0 0.1288600255648944 2.3897387803091896E-4 66-67 0.0 0.001486948574414607 0.0 0.1368125451727011 2.3897387803091896E-4 68-69 0.0 0.001526777554086427 0.0 0.145017314985096 2.3897387803091896E-4 70-71 0.0 0.0015400538806437 0.0 0.15251843948995542 2.3897387803091896E-4 72-73 0.0 0.0015400538806437 0.0 0.158280365215812 2.6552653114546553E-4 74-75 0.0 0.001593159186872793 0.0 0.16271465828594128 2.920791842600121E-4 76-77 0.0 0.0016595408196591597 0.0 0.1673215436013151 2.920791842600121E-4 78-79 0.0 0.001672817146216433 0.0 0.17017595381112885 2.920791842600121E-4 80-81 0.0 0.001672817146216433 0.0 0.17126461258882525 2.920791842600121E-4 82-83 0.0 0.001686093472773706 0.0 0.1719948105494753 2.920791842600121E-4 84-85 0.0 0.0016993697993309793 0.0 0.17247275830553713 2.920791842600121E-4 86-87 0.0 0.0016993697993309793 0.0 0.17273828483668258 2.920791842600121E-4 88 0.0 0.0017524751055600725 0.0 0.17280466646946896 2.920791842600121E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 3810 0.0 45.631695 1 GTATCAA 6710 0.0 33.093704 1 TCAACGC 7665 0.0 27.680515 4 ATCAACG 7785 0.0 27.35968 3 TACGCTA 180 7.844495E-4 26.990936 94 CAACGCA 7960 0.0 26.654667 5 TATCAAC 8135 0.0 26.385134 2 AACGCAG 8160 0.0 26.203318 6 ACGCAGA 9680 0.0 22.00363 7 CGCAGAG 9925 0.0 21.501976 8 GTACATG 9760 0.0 21.274523 1 TACATGG 10110 0.0 20.497267 2 GTGGTAT 2070 0.0 20.300604 1 ACATGGG 10005 0.0 20.135893 3 GCAGAGT 11965 0.0 17.870378 9 TGGTATC 2070 0.0 17.514246 2 CATGGGG 7515 0.0 17.323563 4 GAGTACT 6770 0.0 16.94789 12-13 GGACCGT 475 0.0 16.479313 6 AGAGTAC 10500 0.0 16.420458 10-11 >>END_MODULE