##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138708_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6172788 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.803425453781987 31.0 31.0 34.0 30.0 34.0 2 32.076979316315416 33.0 31.0 34.0 30.0 34.0 3 31.9878497366182 33.0 31.0 34.0 30.0 34.0 4 35.830536703998256 37.0 35.0 37.0 35.0 37.0 5 35.61968805667715 37.0 35.0 37.0 33.0 37.0 6 35.70774437741908 37.0 35.0 37.0 33.0 37.0 7 35.62738846692937 37.0 35.0 37.0 33.0 37.0 8 35.610196559480094 37.0 35.0 37.0 33.0 37.0 9 37.33844998402667 39.0 37.0 39.0 34.0 39.0 10-11 37.215309354541255 39.0 37.0 39.0 33.0 39.0 12-13 37.17771807487962 39.0 37.0 39.0 33.0 39.0 14-15 38.37960942446104 40.0 38.0 41.0 33.0 41.0 16-17 38.335308696815765 40.0 38.0 41.0 33.0 41.0 18-19 38.333591725489356 40.0 38.0 41.0 33.5 41.0 20-21 38.329969327212154 40.0 38.0 41.0 33.5 41.0 22-23 38.26584650881959 40.0 38.0 41.0 33.0 41.0 24-25 38.19278110680044 40.0 37.5 41.0 33.0 41.0 26-27 38.0298931342074 40.0 37.0 41.0 33.0 41.0 28-29 37.88371514203605 40.0 37.0 41.0 33.0 41.0 30-31 37.727523767913304 40.0 37.0 41.0 32.5 41.0 32-33 37.565564832815255 39.5 36.5 41.0 32.0 41.0 34-35 37.43918068324401 39.0 36.0 41.0 32.0 41.0 36-37 37.52683362885928 39.0 36.0 41.0 32.0 41.0 38-39 37.50179352472045 39.0 36.0 41.0 32.0 41.0 40-41 37.466219806999014 39.0 36.0 41.0 32.0 41.0 42-43 37.53711572120609 40.0 36.5 41.0 32.0 41.0 44-45 37.57240715256785 40.0 36.5 41.0 32.0 41.0 46-47 37.45952037422303 40.0 36.0 41.0 31.5 41.0 48-49 37.39642345382418 39.0 36.0 41.0 31.0 41.0 50-51 37.30206633528849 39.0 36.0 41.0 31.0 41.0 52-53 37.15170376422871 39.0 36.0 41.0 31.0 41.0 54-55 36.9809977324221 39.0 35.0 41.0 31.0 41.0 56-57 36.84461960548299 39.0 35.0 40.0 31.0 41.0 58-59 36.58878942361865 38.5 35.0 40.0 30.0 41.0 60-61 36.42880367884058 38.0 35.0 40.0 30.0 41.0 62-63 36.16479277703603 38.0 34.5 40.0 30.0 41.0 64-65 35.862415093212945 37.0 34.0 40.0 29.0 41.0 66-67 35.534644015159614 37.0 34.0 39.5 29.0 41.0 68-69 35.30300866457326 36.0 34.0 39.0 29.0 41.0 70-71 34.98005129575844 36.0 34.0 39.0 29.0 40.5 72-73 34.68055493965714 35.0 33.0 38.5 29.0 40.0 74-75 34.39209314187936 35.0 33.0 37.5 28.5 40.0 76-77 33.04523521946652 34.0 31.5 36.0 26.5 39.0 78-79 33.77541464680803 35.0 32.5 36.5 28.5 39.0 80-81 33.79485009809548 35.0 33.0 36.0 29.0 39.0 82-83 33.55712321948671 35.0 33.0 36.0 29.0 37.5 84-85 33.34562762041405 35.0 33.0 35.5 29.0 37.0 86-87 33.16877348807044 35.0 33.0 35.0 29.0 37.0 88-89 33.04936359512986 35.0 32.5 35.0 29.0 36.0 90-91 32.90977551986924 35.0 32.0 35.0 28.5 36.0 92-93 32.89527356340906 34.0 32.0 35.0 29.0 36.0 94-95 32.831015589255415 34.0 32.0 35.0 29.0 35.0 96-97 32.92860433534457 34.0 32.0 35.0 29.0 35.0 98-99 33.047921625260884 34.0 32.0 35.0 29.0 35.0 100 32.00263121026294 34.0 31.0 35.0 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 4.0 19 12.0 20 42.0 21 314.0 22 1239.0 23 4239.0 24 11157.0 25 23999.0 26 43565.0 27 68202.0 28 97234.0 29 129882.0 30 164317.0 31 201560.0 32 247400.0 33 306992.0 34 396268.0 35 531235.0 36 775625.0 37 1198332.0 38 1316297.0 39 632402.0 40 22471.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.95946790980024 19.968108413896605 13.952803822195092 24.119619854108063 2 15.502087549418512 20.830571210286177 40.192519166379924 23.474822073915387 3 18.912300488710823 25.118929569880365 30.084754480605223 25.88401546080358 4 13.204843581214842 17.286710640313583 37.55431095317059 31.954134825300983 5 13.610770368267952 37.50028350236555 35.228376545573894 13.660569583792606 6 31.494925793660823 36.885941976299854 17.922695546971642 13.696436683067684 7 27.652674933919645 32.09426599455546 22.191026161922295 18.0620329096026 8 25.216417605788504 36.545350334403196 20.348584788591477 17.88964727121683 9 25.721732222133664 16.543140635965468 20.862760878876774 36.8723662630241 10-11 25.038645422457407 26.413194491694842 28.09917495951586 20.448985126331895 12-13 25.407822202868463 23.814004304051913 28.539365032461834 22.238808460617797 14-15 22.44668049510205 25.341053345749113 26.059229638212102 26.15303652093673 16-17 22.23988576960686 28.49291924491818 26.775275612899712 22.491919372575246 18-19 22.246442663718632 27.66527751260935 28.473635085059595 21.61464473861242 20-21 22.967438282630777 26.79663941133804 28.439598008609657 21.796324297421528 22-23 22.72748594827559 26.700386862442777 28.281320800927023 22.290806388354607 24-25 22.501767715605798 26.864480106858675 28.31121939882922 22.322532778706318 26-27 22.45532955430849 26.942604712450407 28.28559803380239 22.316467699438707 28-29 22.419734837360316 27.092792320635535 28.254051186027606 22.233421655976542 30-31 22.647198661301058 26.961980459240436 28.13229378795878 22.258527091499726 32-33 22.39292654064545 27.1017320705462 28.128728537760487 22.376612851047863 34-35 22.5728181736486 27.12374500169632 28.11408802672969 22.189348797925394 36-37 22.5686543420908 27.07643112112576 28.047715588886323 22.307198947897113 38-39 22.393149565387223 27.217147191195412 28.091466683828703 22.29823655958866 40-41 22.67481241607692 27.104598126670265 27.900664302922866 22.319925154329944 42-43 22.534218352978204 27.17589584313218 27.76928158244734 22.520604221442277 44-45 22.603102641240035 27.276771374320397 27.61269868012452 22.507427304315048 46-47 22.675899042995738 27.268639911675447 27.402662164602255 22.652798880726564 48-49 22.558816148479863 27.394395806844475 27.3695355792755 22.677252465400166 50-51 22.572401288032605 27.48921636185731 27.32157978529684 22.61680256481325 52-53 22.775287283944078 27.388355777953088 27.177989886142555 22.658367051960276 54-55 22.731094492898464 27.264541150150546 27.267256550881857 22.737107806069126 56-57 22.694692986027082 27.45409989386751 27.241074170572183 22.610132949533227 58-59 22.67639447738763 27.480207611195723 27.20815354577254 22.635244365644105 60-61 22.766299958264344 27.399115070793222 27.277046611727684 22.55753835921475 62-63 22.783403354523244 27.476037950022096 27.187959056435183 22.552599639019473 64-65 22.675672817988694 27.46558382516861 27.197351305536344 22.66139205130635 66-67 22.76571252313859 27.458411769500803 27.05721531737324 22.718660389987367 68-69 22.66672903682367 27.43037568044243 27.16843070583551 22.734464576898382 70-71 22.674153812477712 27.248360151876945 27.21185806041106 22.865627975234283 72-73 22.728343282455786 27.310033322609726 27.143688364094192 22.817935030840296 74-75 22.56523696414046 27.429300427289565 27.187498335336624 22.81796427323335 76-77 22.712648722410076 27.337892267696674 27.10934847513986 22.840110534753393 78-79 22.605669460296735 27.318710035550765 27.146838223672347 22.928782280480156 80-81 22.698681711516087 27.34735955010961 27.11669852637648 22.837260211997823 82-83 22.68422462143854 27.325910921301748 27.24727564880726 22.74258880845245 84-85 22.8023528728724 27.30575413102074 27.170692949230023 22.72120004687683 86-87 22.620313264000153 27.326289587245007 27.259356285832474 22.794040862922365 88-89 22.627134331612748 27.274946531836946 27.29989076223867 22.798028374311635 90-91 22.710962700098452 27.275211309479435 27.2614869807516 22.75233900967051 92-93 22.71027825313916 27.209674051127553 27.31077177405022 22.76927592168307 94-95 22.572031794806307 27.27497625662029 27.39282729639301 22.760164652180396 96-97 22.56975509682969 27.39781704181204 27.468085498872064 22.564342362486205 98-99 23.71642615272741 29.380103728939865 27.624123822999724 19.279346295333 100 22.713747114520878 30.368838331609787 21.279298465179448 25.638116088689888 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1073.0 1 958.5 2 1366.0 3 1991.5 4 2700.0 5 4390.5 6 5909.5 7 7172.5 8 8120.0 9 8146.5 10 7405.5 11 6561.5 12 6976.0 13 9162.5 14 14350.5 15 21469.5 16 27514.0 17 31294.5 18 32546.5 19 31757.5 20 29787.0 21 27746.5 22 26775.0 23 28046.0 24 32126.5 25 39209.0 26 48784.0 27 59272.0 28 70344.0 29 82870.5 30 95387.5 31 107420.0 32 120171.5 33 132471.0 34 144630.5 35 157426.0 36 171761.5 37 184708.0 38 195531.5 39 205308.5 40 215074.5 41 224814.5 42 232208.0 43 239400.0 44 245815.0 45 252530.0 46 258319.0 47 262442.0 48 266496.5 49 268303.0 50 267562.5 51 263162.0 52 255782.5 53 247017.5 54 236882.0 55 224377.0 56 209639.0 57 193295.0 58 174899.0 59 153781.0 60 130776.5 61 108273.0 62 87735.0 63 69676.0 64 53862.5 65 41619.5 66 32146.5 67 24395.0 68 18410.0 69 13649.5 70 9746.0 71 6965.0 72 5068.0 73 3416.5 74 2253.0 75 1528.5 76 1028.5 77 666.0 78 435.5 79 296.0 80 209.5 81 147.0 82 105.5 83 67.0 84 42.0 85 30.0 86 23.5 87 17.5 88 12.5 89 8.0 90 5.5 91 5.0 92 5.0 93 3.5 94 1.5 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 2.7540229795677417E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0014013116925447626 20-21 0.00303763828240753 22-23 0.005606035529141298 24-25 0.0012802910377034365 26-27 0.0017915768648896495 28-29 0.0041293051758528295 30-31 0.008994600314737883 32-33 0.015154277881549277 34-35 2.3713292232473994E-4 36-37 7.892682537809856E-4 38-39 0.001739365087016708 40-41 0.0026639217972770544 42-43 2.864351153276232E-4 44-45 1.7018022170568745E-5 46-47 0.004070764517977159 48-49 0.0030367364185009123 50-51 7.559851387386564E-4 52-53 0.001260244702246333 54-55 0.00109331771382606 56-57 0.0013312798417244114 58-59 7.325288884212913E-4 60-61 3.888399958597799E-4 62-63 0.002095959971655884 64-65 5.579871078497343E-4 66-67 0.0020282330034074314 68-69 0.0019175550127648149 70-71 5.884235896663403E-4 72-73 9.33342097481823E-4 74-75 0.008572595512582923 76-77 0.003918147158076273 78-79 0.006814608623933606 80-81 1.1498542298433167E-4 82-83 0.004919100932530078 84-85 0.0027953292198988735 86-87 6.32883422328018E-4 88-89 0.003482532493192703 90-91 9.149468771677041E-4 92-93 6.911084861786942E-5 94-95 7.421591766509655E-4 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 132.0 20-21 521.0 22-23 1034.0 24-25 2550.0 26-27 3788.0 28-29 7366.0 30-31 15850.0 32-33 20410.0 34-35 29655.0 36-37 42442.0 38-39 49431.0 40-41 51181.0 42-43 56296.0 44-45 65716.0 46-47 64873.0 48-49 59682.0 50-51 55042.0 52-53 53336.0 54-55 57457.0 56-57 60419.0 58-59 60176.0 60-61 57820.0 62-63 56223.0 64-65 59589.0 66-67 63105.0 68-69 64184.0 70-71 63597.0 72-73 60470.0 74-75 62185.0 76-77 61936.0 78-79 66155.0 80-81 67422.0 82-83 65463.0 84-85 67630.0 86-87 71882.0 88-89 80021.0 90-91 84824.0 92-93 92761.0 94-95 109173.0 96-97 240231.0 98-99 401847.0 100-101 3518913.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.8392160102104 #Duplication Level Percentage of deduplicated Percentage of total 1 90.84432434935256 78.88849905475043 2 6.534110831774297 11.348341239102073 3 1.464834092094441 3.8161513242752867 4 0.5475028146134394 1.901788607376586 5 0.24678155008665192 1.071515816765466 6 0.12251277326624448 0.6383347909006399 7 0.07045126568362264 0.42825528752249814 8 0.04372215716567531 0.3037438280433957 9 0.029675561931190086 0.2319302279490293 >10 0.09444353112960199 1.239018868025927 >50 0.0013834663960562196 0.07770894971415118 >100 2.5760650626367406E-4 0.054712005574488645 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.6200135173927892E-5 0.0 1.6200135173927892E-5 0.0 3 0.0 1.6200135173927892E-5 0.0 1.6200135173927892E-5 0.0 4 0.0 8.100067586963946E-5 0.0 1.6200135173927892E-5 0.0 5 0.0 8.100067586963946E-5 0.0 1.6200135173927892E-5 0.0 6 4.8600405521783676E-5 8.100067586963946E-5 0.0 1.6200135173927892E-5 0.0 7 4.8600405521783676E-5 9.720081104356735E-5 0.0 1.6200135173927892E-5 0.0 8 4.8600405521783676E-5 9.720081104356735E-5 0.0 1.6200135173927892E-5 0.0 9 4.8600405521783676E-5 2.7540229795677417E-4 0.0 1.6200135173927892E-5 1.6200135173927892E-5 10-11 4.8600405521783676E-5 2.7540229795677417E-4 0.0 1.6200135173927892E-5 2.4300202760891838E-5 12-13 4.8600405521783676E-5 2.7540229795677417E-4 0.0 1.6200135173927892E-5 4.050033793481973E-5 14-15 6.480054069571157E-5 4.212035145221252E-4 0.0 3.2400270347855784E-5 6.480054069571157E-5 16-17 1.2150101380445919E-4 4.374036496960531E-4 0.0 3.2400270347855784E-5 6.480054069571157E-5 18-19 1.2960108139142314E-4 4.779039876308728E-4 0.0 3.2400270347855784E-5 6.480054069571157E-5 20-21 1.2960108139142314E-4 5.508045959135483E-4 0.0 3.2400270347855784E-5 6.480054069571157E-5 22-23 1.2960108139142314E-4 5.99405001435332E-4 0.0 3.2400270347855784E-5 8.91007434566034E-5 24-25 1.2960108139142314E-4 7.45206218000683E-4 0.0 9.720081104356735E-5 9.720081104356735E-5 26-27 1.2960108139142314E-4 8.100067586963946E-4 0.0 2.106017572610626E-4 1.2960108139142314E-4 28-29 1.2960108139142314E-4 8.100067586963946E-4 0.0 7.614063531746109E-4 1.3770114897838708E-4 30-31 1.2960108139142314E-4 8.586071642181783E-4 0.0 0.001798215004305996 1.4580121656535103E-4 32-33 1.2960108139142314E-4 8.667072318051422E-4 0.0 0.003863732238981802 1.7010141932624287E-4 34-35 1.2960108139142314E-4 9.558079752617456E-4 0.0 0.006439553731636337 1.8630155450017076E-4 36-37 1.4580121656535103E-4 0.001036808651131385 0.0 0.010926991174814361 2.0250168967409865E-4 38-39 1.4580121656535103E-4 0.0010773089890662047 0.0 0.01824945227342977 2.268018924349905E-4 40-41 1.4580121656535103E-4 0.0011664097325228082 0.0 0.025644813980327853 2.4300202760891838E-4 42-43 1.5390128415231498E-4 0.0011907099352837002 0.0 0.03256227169959506 2.4300202760891838E-4 44-45 1.782014869132068E-4 0.0013851115573708349 0.0 0.04054893834034151 2.4300202760891838E-4 46-47 1.944016220871347E-4 0.0015552129766970776 0.0 0.04888390788732741 2.4300202760891838E-4 48-49 1.944016220871347E-4 0.0015552129766970776 0.0 0.05733227838053081 2.592021627828463E-4 50-51 2.106017572610626E-4 0.0017739148015451043 0.0 0.06561054745440796 2.592021627828463E-4 52-53 2.106017572610626E-4 0.001798215004305996 0.0 0.07331371172961067 2.592021627828463E-4 54-55 2.106017572610626E-4 0.001814415139479924 0.0 0.08119507749172658 2.592021627828463E-4 56-57 2.106017572610626E-4 0.001814415139479924 0.0 0.08818543581927649 2.592021627828463E-4 58-59 2.106017572610626E-4 0.0018468154098277797 0.0 0.09524059468752208 2.592021627828463E-4 60-61 2.4300202760891838E-4 0.0018630155450017076 0.0 0.10238485429922428 2.673022303698102E-4 62-63 3.0780256830462995E-4 0.0018711156125886716 0.0 0.10909171026123042 2.9160243313070206E-4 64-65 3.0780256830462995E-4 0.0020007166939800944 0.0 0.11544216324941015 2.99702500717666E-4 66-67 3.0780256830462995E-4 0.0020250168967409863 0.0 0.1217440158320681 3.0780256830462995E-4 68-69 3.0780256830462995E-4 0.002081717369849734 0.0 0.12841847152372637 3.0780256830462995E-4 70-71 3.2400270347855784E-4 0.00211411764019759 0.0 0.13401561822631847 3.2400270347855784E-4 72-73 4.212035145221252E-4 0.0021303177753715175 0.0 0.1388675587109099 3.564029738264136E-4 74-75 4.212035145221252E-4 0.0021789181808933014 0.0 0.14244778858434795 3.564029738264136E-4 76-77 4.374036496960531E-4 0.002251818789175977 0.0 0.14618191974193834 3.726031090003415E-4 78-79 4.374036496960531E-4 0.0022842190595238326 0.0 0.1485228392745709 3.888032441742694E-4 80-81 4.374036496960531E-4 0.0022842190595238326 0.0 0.1493085458305064 3.9690331176123336E-4 82-83 4.4550371728301703E-4 0.0022842190595238326 0.0 0.1499646513050505 4.050033793481973E-4 84-85 4.53603784869981E-4 0.0022842190595238326 0.0 0.15015095285955066 4.050033793481973E-4 86-87 4.617038524569449E-4 0.0022842190595238326 0.0 0.15026435380576814 4.050033793481973E-4 88 4.8600405521783676E-4 0.0024138201409152557 0.0 0.1502724538733551 4.050033793481973E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7235 0.0 47.418125 1 GTATCAA 12725 0.0 34.32796 1 TCAACGC 15245 0.0 27.946049 4 ATCAACG 15455 0.0 27.620008 3 CAACGCA 15775 0.0 27.059729 5 TATCAAC 16120 0.0 26.86661 2 AACGCAG 16135 0.0 26.455976 6 ACGCAGA 19060 0.0 22.374207 7 GTACATG 18655 0.0 21.948221 1 CGCAGAG 19650 0.0 21.681301 8 TACATGG 18400 0.0 21.62112 2 ACATGGG 18815 0.0 20.50483 3 GTGGTAT 3655 0.0 18.61375 1 GAGTACT 12800 0.0 18.538326 12-13 CATGGGG 14165 0.0 18.362356 4 GCAGAGT 23070 0.0 18.323313 9 TGGTATC 3670 0.0 17.068224 2 AGAGTAC 20705 0.0 17.0002 10-11 CAGAGTA 22580 0.0 16.791895 10-11 GTACTTT 14095 0.0 16.689754 14-15 >>END_MODULE