##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138707_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5125198 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.786684338829446 31.0 31.0 34.0 30.0 34.0 2 32.05825589567466 33.0 31.0 34.0 30.0 34.0 3 31.965526405028644 33.0 31.0 34.0 30.0 34.0 4 35.81505865724602 37.0 35.0 37.0 35.0 37.0 5 35.59889159404183 37.0 35.0 37.0 33.0 37.0 6 35.68820482642817 37.0 35.0 37.0 33.0 37.0 7 35.607724618639125 37.0 35.0 37.0 33.0 37.0 8 35.59252676677077 37.0 35.0 37.0 33.0 37.0 9 37.32025689544092 39.0 37.0 39.0 34.0 39.0 10-11 37.1971690654683 39.0 37.0 39.0 33.0 39.0 12-13 37.15464797652696 39.0 37.0 39.0 33.0 39.0 14-15 38.351152774975716 40.0 38.0 41.0 33.0 41.0 16-17 38.308194044405695 40.0 38.0 41.0 33.0 41.0 18-19 38.30453789297506 40.0 38.0 41.0 33.5 41.0 20-21 38.29975426024164 40.0 38.0 41.0 33.5 41.0 22-23 38.23329662503882 40.0 38.0 41.0 33.0 41.0 24-25 38.15414507747755 40.0 37.0 41.0 33.0 41.0 26-27 37.98876641058487 40.0 37.0 41.0 33.0 41.0 28-29 37.84129882503001 40.0 37.0 41.0 33.0 41.0 30-31 37.68489675330947 40.0 37.0 41.0 32.0 41.0 32-33 37.52246073729187 39.0 36.5 41.0 32.0 41.0 34-35 37.393971606805025 39.0 36.0 41.0 31.5 41.0 36-37 37.48221948080348 39.0 36.0 41.0 32.0 41.0 38-39 37.44851989076348 39.0 36.0 41.0 31.5 41.0 40-41 37.41493804359833 39.0 36.0 41.0 31.0 41.0 42-43 37.484923540285976 39.5 36.0 41.0 32.0 41.0 44-45 37.52018717473533 40.0 36.0 41.0 32.0 41.0 46-47 37.39884436861111 39.5 36.0 41.0 31.0 41.0 48-49 37.33494074633914 39.0 36.0 41.0 31.0 41.0 50-51 37.2329722420575 39.0 36.0 41.0 31.0 41.0 52-53 37.076616768471084 39.0 35.0 41.0 31.0 41.0 54-55 36.901015893081045 39.0 35.0 40.5 31.0 41.0 56-57 36.75775155990239 39.0 35.0 40.0 31.0 41.0 58-59 36.49440234948861 38.0 35.0 40.0 30.0 41.0 60-61 36.328516001596725 38.0 35.0 40.0 30.0 41.0 62-63 36.05996532179948 37.5 34.0 40.0 29.5 41.0 64-65 35.74756631916915 37.0 34.0 40.0 29.0 41.0 66-67 35.409243957313706 36.5 34.0 39.0 29.0 41.0 68-69 35.16938224049909 36.0 34.0 39.0 29.0 41.0 70-71 34.842204605017436 36.0 33.5 39.0 29.0 40.0 72-73 34.540653287594935 35.0 33.0 38.0 28.0 40.0 74-75 34.254465875574056 35.0 33.0 37.0 28.0 39.5 76-77 32.91689893138201 34.0 31.5 36.0 26.5 39.0 78-79 33.657180420809205 35.0 32.5 36.0 28.0 39.0 80-81 33.68839529894671 35.0 33.0 36.0 29.0 38.5 82-83 33.459751212244605 35.0 33.0 36.0 29.0 37.0 84-85 33.25993048192268 35.0 33.0 35.0 28.0 37.0 86-87 33.08941752391885 35.0 32.5 35.0 28.0 36.5 88-89 32.97460989800952 35.0 32.0 35.0 28.0 36.0 90-91 32.844184595749155 34.5 32.0 35.0 28.0 36.0 92-93 32.839579886369506 34.0 32.0 35.0 28.5 36.0 94-95 32.78115185187304 34.0 32.0 35.0 29.0 35.0 96-97 32.878240600569 34.0 32.0 35.0 29.0 35.0 98-99 33.00492090714641 34.0 32.0 35.0 29.0 35.0 100 31.95115603808785 34.0 31.0 35.0 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 15.0 20 31.0 21 238.0 22 1047.0 23 3826.0 24 9729.0 25 20683.0 26 37019.0 27 58670.0 28 83614.0 29 110870.0 30 138139.0 31 170270.0 32 209366.0 33 258272.0 34 333324.0 35 447588.0 36 650536.0 37 997808.0 38 1063940.0 39 512154.0 40 18056.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.64563879203082 19.62515782320172 13.4666433309783 24.26256005378915 2 16.01573559026121 20.701194510181757 39.31294738524197 23.970122514315058 3 19.20570749572211 24.723493177813896 29.79103213734515 26.279767189118843 4 13.430661605658942 16.844480935175575 36.96458166104022 32.760275798125264 5 13.778940833115131 37.343552385683445 35.01191563721051 13.865591143990924 6 32.2725482995974 36.31073375116435 17.536239575524693 13.880478373713562 7 28.23408968785206 31.748139291399085 21.802435730287883 18.215335290460974 8 25.74011774764604 36.03593461169695 20.12183724414159 18.102110396515414 9 25.907311288266328 16.19588160301319 20.518856052000334 37.37795105672015 10-11 25.346493930575953 26.147058123412986 27.864191783419876 20.64225616259118 12-13 25.634521827254286 23.555333862223467 28.295004407634593 22.515139902887654 14-15 22.653280907391284 25.080991992894713 25.72932792059936 26.53639917911464 16-17 22.540338929344777 28.252957251602766 26.492537459040605 22.71416636001185 18-19 22.59552004242636 27.424581943567905 28.092059583827915 21.887838430177815 20-21 23.227900693577677 26.527226550788424 28.13338538084721 22.111487374786687 22-23 22.98507212187731 26.437987987753566 28.00987255527991 22.567067335089217 24-25 22.82737629909061 26.56914178770171 28.031673382323174 22.571808530884503 26-27 22.715167610924915 26.707981321505898 28.019078817289078 22.557772250280102 28-29 22.691868421021773 26.775901499081666 28.015742448600374 22.51648763129619 30-31 22.89081956895906 26.65974349349778 27.90439756892872 22.545039368614436 32-33 22.63684800005653 26.85870552197094 27.880838002007618 22.623608475964915 34-35 22.789450720025688 26.877094801494323 27.846393863555107 22.487060614924886 36-37 22.84889905532013 26.780719130086776 27.776957425081577 22.593424389511515 38-39 22.67219423397817 26.91805853845478 27.874787426846893 22.534959800720152 40-41 22.907999237147113 26.81152149398398 27.721540580402227 22.558938688466682 42-43 22.73488000877316 26.932359350217606 27.54937440471476 22.78338623629448 44-45 22.80827210628666 26.995400931795245 27.40833535847712 22.787991603440975 46-47 22.90344786133437 26.98929989819264 27.21595025547345 22.891301984999533 48-49 22.83651409906614 27.092222059202076 27.128738804865833 22.94252503686595 50-51 22.83806718230158 27.20032197632824 27.071671582446555 22.889939258923622 52-53 22.981805656773453 27.130480082390772 26.939751961220402 22.94796229961537 54-55 22.982089147676916 27.024817267098634 27.009249395675166 22.983844189549288 56-57 22.94088595258045 27.20765072342335 26.97004462892782 22.88141869506838 58-59 22.894343732764998 27.19836151443514 26.966800712818824 22.940494039981044 60-61 22.980452231901957 27.1305043817908 27.030477989987716 22.858565396319527 62-63 22.98758171269352 27.280558448542276 26.93089278704668 22.800967051717528 64-65 22.91629971415284 27.190627618750042 26.939021069567083 22.95405159753004 66-67 22.983950933257244 27.175101460451945 26.84523954053777 22.995708065753043 68-69 22.88922114454934 27.178662124008262 26.9333077196707 22.99880901177169 70-71 22.89225865672343 26.976340440721536 27.02099575016983 23.110405152385198 72-73 22.977016866161367 27.052600885921365 26.887321740421317 23.08306050749595 74-75 22.787097504216625 27.19427011840591 26.93895205337616 23.079680324001306 76-77 22.954731700270194 27.066918836364017 26.905380639269794 23.072968824095998 78-79 22.816635236801154 27.055816471397144 26.904938016513324 23.222610275288375 80-81 22.888251020616902 27.077137836625447 26.88742459259282 23.147186550164832 82-83 22.933847040361737 27.085488273388243 27.002028166165733 22.97863652008429 84-85 22.970650418185752 27.047494385505633 26.92279655767153 23.05905863863709 86-87 22.88395501672853 27.080668756363245 27.01792172752527 23.017454499382957 88-89 22.87874562839788 27.047136145996387 26.990916965425953 23.083201260179784 90-91 22.885637151691803 27.022225264682497 27.054734630178945 23.037402953446755 92-93 22.96800525913827 26.94828999526434 27.099395479081167 22.98430926651622 94-95 22.805213429076804 26.99304705335253 27.15707574744647 23.0446637701242 96-97 22.837586742447304 27.167218189262975 27.153370435762543 22.84182463252718 98-99 23.91316110923708 29.164503216105974 27.371069174114776 19.551266500542173 100 22.92201545213121 30.10286828565815 21.036114392419414 25.939001869791227 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1121.0 1 973.0 2 1226.5 3 1710.5 4 2208.5 5 3483.5 6 4790.5 7 6021.0 8 7049.0 9 7194.5 10 6402.0 11 5485.0 12 5635.0 13 7462.5 14 12064.5 15 18075.0 16 22699.0 17 25292.0 18 25961.5 19 25158.5 20 23479.0 21 21630.0 22 20705.0 23 21456.5 24 24467.5 25 29900.5 26 37316.5 27 45340.0 28 53994.0 29 64233.0 30 74169.0 31 83526.0 32 93327.5 33 103119.5 34 113169.5 35 123207.0 36 134621.0 37 145671.5 38 154821.5 39 162943.5 40 171437.5 41 179529.0 42 186365.0 43 194137.5 44 201219.5 45 207786.0 46 213050.5 47 217246.0 48 221700.0 49 224922.5 50 226970.0 51 226945.5 52 223780.5 53 217321.0 54 208692.5 55 198216.5 56 185892.5 57 172334.0 58 156709.0 59 138691.0 60 119513.5 61 100534.5 62 82582.0 63 65983.5 64 50854.5 65 38706.5 66 29608.0 67 22726.0 68 17343.0 69 12890.0 70 9397.0 71 6828.5 72 4876.5 73 3272.0 74 2158.5 75 1432.5 76 961.0 77 672.0 78 480.5 79 347.5 80 233.0 81 154.0 82 108.0 83 65.0 84 37.0 85 23.5 86 19.5 87 16.5 88 13.0 89 10.0 90 7.5 91 6.0 92 4.5 93 2.0 94 1.0 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 1.951144131407216E-5 2 1.951144131407216E-5 3 1.5609153051257728E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.001609693908410953 20-21 0.003102461119967001 22-23 0.005376260677024409 24-25 0.0012199488773103268 26-27 0.0017672491819393774 28-29 0.00435794648089959 30-31 0.008436293797161157 32-33 0.014189499887838186 34-35 2.0683274942478335E-4 36-37 8.517070139756207E-4 38-39 0.0018662177365134083 40-41 0.002918481282722842 42-43 3.046226486939304E-4 44-45 2.0516437718609054E-5 46-47 0.0037474333714651114 48-49 0.0036651933079661345 50-51 7.962289746449908E-4 52-53 0.0012439102016936052 54-55 8.666798329777959E-4 56-57 0.001566633124649767 58-59 7.094880389739517E-4 60-61 4.935119442789123E-4 62-63 0.001815174404225726 64-65 4.819366140900595E-4 66-67 0.002067911371177428 68-69 0.001694993061122156 70-71 5.010722947106809E-4 72-73 7.736822317831078E-4 74-75 0.00760422378508137 76-77 0.0032887380454372046 78-79 0.006404688483627716 80-81 1.2769267132174556E-4 82-83 0.004718553208622663 84-85 0.0027894061512194965 86-87 7.885080959066405E-4 88-89 0.0035212225031949315 90-91 9.700057590627639E-4 92-93 4.2421510307578576E-5 94-95 8.105119931893836E-4 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 153.0 20-21 486.0 22-23 902.0 24-25 2065.0 26-27 3180.0 28-29 6521.0 30-31 12695.0 32-33 17260.0 34-35 24710.0 36-37 36618.0 38-39 41861.0 40-41 43363.0 42-43 47414.0 44-45 56818.0 46-47 56798.0 48-49 52635.0 50-51 47737.0 52-53 46346.0 54-55 50355.0 56-57 53626.0 58-59 52771.0 60-61 51336.0 62-63 49230.0 64-65 52743.0 66-67 55578.0 68-69 56742.0 70-71 55972.0 72-73 52847.0 74-75 54270.0 76-77 54115.0 78-79 57689.0 80-81 58916.0 82-83 56951.0 84-85 58256.0 86-87 61902.0 88-89 68120.0 90-91 71672.0 92-93 78356.0 94-95 91292.0 96-97 200171.0 98-99 329327.0 100-101 2855399.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.43986468485889 #Duplication Level Percentage of deduplicated Percentage of total 1 91.82251769017012 81.20771039541707 2 6.024785034888612 10.656623464818233 3 1.2502100644809429 3.317052267910299 4 0.43645444109399956 1.5439988684583614 5 0.18169762500858763 0.8034656684659861 6 0.10197099857246203 0.5410980789317088 7 0.04606237610801409 0.28516252170390904 8 0.03250991721416605 0.23001381434694484 9 0.024556852648672817 0.19546242528011784 >10 0.0772486790041053 1.0618569309559307 >50 0.0015950738306616209 0.0934500949490888 >100 3.9124697964553417E-4 0.06410546876234867 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 3.902288262814432E-5 2 0.0 5.8534323942216475E-5 0.0 0.0 3.902288262814432E-5 3 0.0 7.804576525628864E-5 0.0 0.0 3.902288262814432E-5 4 0.0 2.5364873708293807E-4 0.0 0.0 3.902288262814432E-5 5 0.0 2.731601783970102E-4 0.0 1.951144131407216E-5 3.902288262814432E-5 6 1.5609153051257728E-4 2.731601783970102E-4 0.0 1.951144131407216E-5 3.902288262814432E-5 7 1.5609153051257728E-4 2.731601783970102E-4 0.0 3.902288262814432E-5 3.902288262814432E-5 8 1.5609153051257728E-4 2.731601783970102E-4 0.0 5.8534323942216475E-5 3.902288262814432E-5 9 1.5609153051257728E-4 4.87786032851804E-4 0.0 5.8534323942216475E-5 5.8534323942216475E-5 10-11 1.6584725116961335E-4 4.87786032851804E-4 0.0 5.8534323942216475E-5 5.8534323942216475E-5 12-13 1.7560297182664942E-4 4.87786032851804E-4 0.0 5.8534323942216475E-5 5.8534323942216475E-5 14-15 1.951144131407216E-4 5.950989600792009E-4 0.0 5.8534323942216475E-5 7.804576525628864E-5 16-17 2.5364873708293807E-4 6.04854680736237E-4 0.0 5.8534323942216475E-5 7.804576525628864E-5 18-19 2.5364873708293807E-4 6.536332840214173E-4 0.0 5.8534323942216475E-5 7.804576525628864E-5 20-21 2.5364873708293807E-4 7.121676079636337E-4 0.0 6.829004459925255E-5 7.804576525628864E-5 22-23 2.5364873708293807E-4 7.804576525628863E-4 0.0 9.75572065703608E-5 1.0731292722739686E-4 24-25 2.5364873708293807E-4 8.975263004473192E-4 0.0 1.0731292722739686E-4 1.365800891985051E-4 26-27 2.5364873708293807E-4 9.560606243895357E-4 0.0 1.5609153051257725E-4 1.365800891985051E-4 28-29 2.5364873708293807E-4 9.75572065703608E-4 0.0 5.463203567940204E-4 1.365800891985051E-4 30-31 2.5364873708293807E-4 0.0011901979201584018 0.0 0.001824319762865747 1.365800891985051E-4 32-33 2.5364873708293807E-4 0.0011901979201584018 0.0 0.00415593699989737 1.365800891985051E-4 34-35 2.731601783970102E-4 0.001336533730013943 0.0 0.0075216606265748175 1.365800891985051E-4 36-37 2.731601783970102E-4 0.00149262526052652 0.0 0.012145872218009918 1.4633580985554118E-4 38-39 2.731601783970102E-4 0.0015511595844687367 0.0 0.019443151269472908 1.5609153051257728E-4 40-41 2.731601783970102E-4 0.0016584725116961334 0.0 0.026955056175390686 1.5609153051257728E-4 42-43 2.926716197110824E-4 0.0017365182769524222 0.0 0.03386210640057223 1.5609153051257728E-4 44-45 2.926716197110824E-4 0.001970655572721288 0.0 0.042027644590511434 1.5609153051257728E-4 46-47 2.926716197110824E-4 0.0021657699858620098 0.0 0.05107119763958387 1.5609153051257728E-4 48-49 2.926716197110824E-4 0.0021657699858620098 0.0 0.05972452186237488 1.5609153051257728E-4 50-51 2.926716197110824E-4 0.002565754532800489 0.0 0.06855344905699254 1.5609153051257728E-4 52-53 2.926716197110824E-4 0.0025950216947715973 0.0 0.07732384192766797 1.7560297182664944E-4 54-55 2.926716197110824E-4 0.0026047774154286333 0.0 0.08575278457534713 1.951144131407216E-4 56-57 2.926716197110824E-4 0.0026145331360856693 0.0 0.09343053673243454 1.951144131407216E-4 58-59 2.926716197110824E-4 0.0026145331360856693 0.0 0.1004253884435294 1.951144131407216E-4 60-61 3.1218306102515455E-4 0.002653556018713814 0.0 0.10725439290345465 2.1462585445479376E-4 62-63 3.316945023392267E-4 0.002673067460027886 0.0 0.11380048146432586 2.5364873708293807E-4 64-65 3.316945023392267E-4 0.002926716197110824 0.0 0.12044412723176744 2.5364873708293807E-4 66-67 3.316945023392267E-4 0.0029559833590819323 0.0 0.1271950859264364 2.5364873708293807E-4 68-69 3.316945023392267E-4 0.002995006241710076 0.0 0.13422896052015942 2.5364873708293807E-4 70-71 3.316945023392267E-4 0.0030242734036811845 0.0 0.14027750732752178 2.731601783970102E-4 72-73 3.902288262814432E-4 0.003053540565652293 0.0 0.14489196319829983 3.316945023392267E-4 74-75 3.902288262814432E-4 0.0031413420515656173 0.0 0.14873571713717207 3.316945023392267E-4 76-77 4.097402675955153E-4 0.0032193878168219063 0.0 0.1526087382380154 3.4145022299626276E-4 78-79 4.097402675955153E-4 0.0032584106994500506 0.0 0.15530131713935735 3.5120594365329884E-4 80-81 4.097402675955153E-4 0.0032584106994500506 0.0 0.15618908771914763 3.6096166431033496E-4 82-83 4.194959882525514E-4 0.0032779221407641225 0.0 0.15668662947265646 3.7071738496737103E-4 84-85 4.292517089095875E-4 0.003316945023392267 0.0 0.15695003393039644 3.7071738496737103E-4 86-87 4.292517089095875E-4 0.003316945023392267 0.0 0.15706710257828088 3.7071738496737103E-4 88 4.292517089095875E-4 0.0033754793473344835 0.0 0.15706710257828088 3.7071738496737103E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6015 0.0 50.00448 1 GTATCAA 10475 0.0 34.06321 1 TCAACGC 12855 0.0 26.82718 4 ATCAACG 13170 0.0 26.248098 3 CAACGCA 13285 0.0 25.958858 5 TATCAAC 13510 0.0 25.862005 2 AACGCAG 13535 0.0 25.601147 6 ACGCAGA 16135 0.0 21.424696 7 GTACATG 15815 0.0 21.206884 1 CGCAGAG 16475 0.0 20.982548 8 TACATGG 15875 0.0 20.86719 2 ACATGGG 16015 0.0 20.401773 3 GTGGTAT 3125 0.0 19.249725 1 TGGTATC 2995 0.0 19.122278 2 GAGTACT 10415 0.0 18.000141 12-13 GCAGAGT 19125 0.0 17.859724 9 CATGGGG 12405 0.0 17.570356 4 CAGAGTA 18505 0.0 17.09991 10-11 AGAGTAC 17055 0.0 16.669365 10-11 GTACTTT 11575 0.0 16.144815 14-15 >>END_MODULE