##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138704_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3872857 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.22137533092495 33.0 31.0 34.0 31.0 34.0 2 32.479595812600365 34.0 31.0 34.0 31.0 34.0 3 32.497978365842066 34.0 31.0 34.0 31.0 34.0 4 36.06378934208002 37.0 35.0 37.0 35.0 37.0 5 35.82579656310574 37.0 35.0 37.0 34.0 37.0 6 35.97888458055642 37.0 35.0 37.0 35.0 37.0 7 35.93877956247804 37.0 35.0 37.0 35.0 37.0 8 35.95028244006944 37.0 35.0 37.0 35.0 37.0 9 37.715977636148196 39.0 37.0 39.0 35.0 39.0 10-11 37.6313931807965 39.0 37.0 39.0 35.0 39.0 12-13 37.59076516380543 39.0 37.0 39.0 35.0 39.0 14-15 38.87632979993839 40.0 38.0 41.0 35.0 41.0 16-17 38.834857186826156 40.0 38.0 41.0 35.0 41.0 18-19 38.84106035931613 40.0 38.0 41.0 35.0 41.0 20-21 38.85454492672144 40.0 38.0 41.0 35.0 41.0 22-23 38.77500033740882 40.0 38.0 41.0 35.0 41.0 24-25 38.70454784186582 40.0 38.0 41.0 34.0 41.0 26-27 38.55236675940262 40.0 38.0 41.0 34.0 41.0 28-29 38.42448893290472 40.0 38.0 41.0 34.0 41.0 30-31 38.299568437740334 40.0 38.0 41.0 34.0 41.0 32-33 38.14570136791029 40.0 38.0 41.0 34.0 41.0 34-35 38.10415229077733 40.0 37.5 41.0 33.5 41.0 36-37 38.11218327889277 40.0 38.0 41.0 33.5 41.0 38-39 38.06954008098225 40.0 37.0 41.0 33.0 41.0 40-41 38.09895024986811 40.0 37.5 41.0 33.0 41.0 42-43 38.15412864148644 40.0 38.0 41.0 33.0 41.0 44-45 38.131408963428974 40.0 37.5 41.0 33.0 41.0 46-47 38.03174678531319 40.0 37.0 41.0 33.0 41.0 48-49 37.94297922885149 40.0 37.0 41.0 33.0 41.0 50-51 37.84508374533908 40.0 37.0 41.0 33.0 41.0 52-53 37.686186534863495 40.0 36.5 41.0 32.5 41.0 54-55 37.55890247227046 39.0 36.0 41.0 32.0 41.0 56-57 37.40101907397728 39.0 36.0 41.0 32.0 41.0 58-59 37.17172082500335 39.0 35.0 41.0 31.5 41.0 60-61 36.98026237551639 39.0 35.0 40.5 31.0 41.0 62-63 36.75690633416785 38.0 35.0 40.0 31.0 41.0 64-65 36.45220899498332 38.0 35.0 40.0 31.0 41.0 66-67 36.123957200351086 37.0 35.0 40.0 31.0 41.0 68-69 35.87205789350082 37.0 34.5 39.5 30.0 41.0 70-71 35.495559594727524 36.0 34.0 39.0 30.0 41.0 72-73 35.21452779274003 36.0 34.0 39.0 30.0 40.0 74-75 34.90042767617415 35.0 34.0 38.0 29.5 40.0 76-77 33.559514633371066 34.5 32.0 36.5 28.0 39.0 78-79 34.30666568370014 35.0 33.5 37.0 29.0 39.0 80-81 34.26284361454084 35.0 34.0 36.5 30.0 39.0 82-83 34.03069564151279 35.0 34.0 36.0 29.5 38.0 84-85 33.83764478002166 35.0 33.5 36.0 29.0 37.0 86-87 33.6202686253841 35.0 33.0 35.0 29.0 37.0 88-89 33.52248404006998 35.0 33.0 35.0 29.0 36.5 90-91 33.426536731049666 35.0 33.0 35.0 29.0 36.0 92-93 33.266657434476244 35.0 33.0 35.0 29.0 36.0 94-95 33.28702281779654 35.0 33.0 35.0 29.0 36.0 96-97 33.34518212707196 35.0 33.0 35.0 29.0 35.5 98-99 33.43387202252981 35.0 33.0 35.0 30.0 35.0 100 32.27263520356492 34.0 31.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 4.0 18 3.0 19 4.0 20 34.0 21 130.0 22 527.0 23 1814.0 24 4514.0 25 10011.0 26 18368.0 27 29846.0 28 43642.0 29 59046.0 30 76011.0 31 95265.0 32 118896.0 33 151296.0 34 204847.0 35 287500.0 36 458860.0 37 815658.0 38 954346.0 39 519129.0 40 23106.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.60505874603684 19.695795636141483 13.575817542449927 24.12332807537175 2 15.600756753993242 20.793486565602603 40.15598820199145 23.449768478412707 3 19.25433859293023 24.751081694986414 29.65273440253539 26.341845309547963 4 13.050391481017758 17.120280970869825 37.350514103670754 32.47881344444166 5 13.92845126995394 37.228950100662125 34.949211912549316 13.893386716834627 6 31.816253479020784 36.597142626231744 17.785448830153037 13.801155064594434 7 27.88179372489095 31.838536770141523 22.015659240710413 18.26401026425711 8 25.363291234352314 36.30634955021577 20.252129112952012 18.0782301024799 9 25.688296779354364 16.36515368370172 20.899274101780673 37.04727543516324 10-11 25.14047123351056 26.462828346102114 27.780331161207343 20.616369259179983 12-13 25.425390093153453 23.91403813773656 28.194302035938847 22.466269733171146 14-15 22.435465600718025 25.278844532602157 25.939764881584836 26.34592498509498 16-17 22.24953341878285 28.513922039881724 26.597711453987916 22.638833087347514 18-19 22.288958771263694 27.6678044141573 28.179842426405106 21.863394388173898 20-21 23.08466471658786 26.73971973814408 28.285529031178534 21.89008651408953 22-23 22.830495890711653 26.701322848676185 28.044262813684284 22.42391844692788 24-25 22.57650153707586 26.820582183868186 28.294749196979087 22.308167082076867 26-27 22.48252833819499 26.943407849718447 28.216189551719488 22.35787426036707 28-29 22.496950918745426 26.99593770448691 28.185043837856238 22.322067538911423 30-31 22.757978269802397 26.762222831457777 28.10730960500427 22.372489293735555 32-33 22.58234517050841 26.860314892648816 28.01091615381938 22.546423783023393 34-35 22.719022755864966 27.003839359628714 28.023583706513875 22.253554177992452 36-37 22.889127881290396 26.857335742957243 27.80229263974072 22.451243736011634 38-39 22.480056757291592 27.194021078824772 27.93620436009049 22.389717803793154 40-41 22.742249421383654 26.99532626280784 27.826752211383926 22.43567210442458 42-43 22.573527304297794 27.13625768159817 27.641400680530154 22.64881433357388 44-45 22.50904524013999 27.178055067680358 27.62906253846055 22.683837153719104 46-47 22.67276321905785 27.14521703138294 27.44044594873054 22.741573800828675 48-49 22.744201464380076 27.407334156936862 27.195379277782344 22.653085100900718 50-51 22.684596249257567 27.402200676633008 27.20913243346531 22.70407064064411 52-53 22.951396361878686 27.295838787973793 27.10536793520634 22.64739691494118 54-55 22.855616674707147 27.29146161284718 27.10810415807111 22.74481755437456 56-57 22.89987352102132 27.514612507004006 26.896850464182503 22.688663507792175 58-59 22.767090754777257 27.48387341485191 27.04229526547247 22.706740564898357 60-61 22.831698928939918 27.475244506322234 26.98597904992084 22.70707751481701 62-63 22.801596430242192 27.47267817699227 27.06033770686008 22.665387685905465 64-65 22.88344474338283 27.343055065181037 27.060751396693068 22.712748794743064 66-67 22.891773559353336 27.45656707115321 26.809378342400297 22.84228102709316 68-69 22.86113748123012 27.39018724065776 26.96573394361026 22.78294133450186 70-71 22.894461402965565 27.271744033680346 26.93068065677555 22.90311390657854 72-73 22.815537550872005 27.368364334865795 26.89393200522766 22.922166109034535 74-75 22.692438184874298 27.409605009958277 26.936813506996693 22.961143298170732 76-77 22.784105202692018 27.459997099190474 26.814837394876385 22.941060303241123 78-79 22.64543968647585 27.46913713461 26.947897261345048 22.937525917569097 80-81 22.738138996939576 27.392615796000307 26.946309244426132 22.922935962633986 82-83 22.923372795809847 27.325250364051072 27.040461042609508 22.710915797529573 84-85 22.862645510626255 27.33108036229048 26.989346504051902 22.81692762303137 86-87 22.685957619414044 27.540556159662476 26.961490727689768 22.81199549323371 88-89 22.89030593839546 27.333044143596062 26.90936039484197 22.867289523166505 90-91 22.800830416635574 27.41170031102588 26.94824059912872 22.839228673209828 92-93 22.84930752131129 27.439901346310148 27.03078650061142 22.680004631767137 94-95 22.559067414312693 27.613368651027425 27.080857951454657 22.746705983205228 96-97 22.541727193365848 27.73875343403276 27.156788979870548 22.562730392730845 98-99 23.764479623153843 29.682544389351218 27.286546685333878 19.26642930216106 100 22.61881934598159 30.866338082056128 21.030270294600857 25.484572277361423 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1306.0 1 1059.0 2 1105.5 3 1472.0 4 1923.0 5 2946.0 6 3884.0 7 4676.0 8 5274.5 9 5376.0 10 5000.0 11 4532.0 12 4792.0 13 6147.0 14 9563.5 15 14215.0 16 17932.5 17 20046.0 18 20633.5 19 19990.5 20 18655.0 21 17178.5 22 16436.5 23 17313.0 24 20053.0 25 24539.5 26 30388.0 27 37077.5 28 43976.0 29 51429.5 30 58648.0 31 65752.0 32 73122.5 33 80278.0 34 88065.0 35 96052.0 36 104774.5 37 112140.0 38 117760.0 39 124255.0 40 130802.0 41 136524.5 42 141320.0 43 146615.5 44 151181.0 45 156680.0 46 164093.0 47 171131.0 48 174197.0 49 173694.0 50 173225.5 51 171266.0 52 163592.0 53 153710.0 54 145930.0 55 138040.0 56 130188.0 57 120178.5 58 108707.0 59 96125.5 60 82667.0 61 71614.5 62 60381.0 63 50339.5 64 42078.5 65 33348.5 66 26597.5 67 20009.5 68 13482.0 69 9744.0 70 7252.5 71 4951.0 72 3564.0 73 2543.0 74 1859.0 75 1323.0 76 837.5 77 474.5 78 334.0 79 246.5 80 166.5 81 103.5 82 70.0 83 44.0 84 26.5 85 20.5 86 18.5 87 16.0 88 12.0 89 8.5 90 6.0 91 4.0 92 3.5 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 1.2910365655122304E-4 18-19 0.0 20-21 0.0011361558888509024 22-23 4.390108105120881E-4 24-25 7.878073255749378E-4 26-27 0.0024547775073646555 28-29 0.002081593823381031 30-31 0.0024863789813952806 32-33 0.001220740854638075 34-35 0.0011472318208733093 36-37 0.006766282251792507 38-39 0.0030667243880596025 40-41 8.001083880162966E-4 42-43 5.382447810776817E-5 44-45 7.751545821427231E-4 46-47 0.003179583714034572 48-49 1.532067353580671E-4 50-51 0.00140810680884415 52-53 0.002873338815436202 54-55 0.001379580909186931 56-57 1.3078002291556622E-4 58-59 0.0019552785169285954 60-61 2.5281129882102194E-4 62-63 0.0012931994400747168 64-65 0.0032082388790808684 66-67 0.004416582528461181 68-69 0.0020569308596973695 70-71 0.0012947009311899613 72-73 0.0013590199835094917 74-75 0.022899437806664338 76-77 0.007767666155541124 78-79 0.002423617857216372 80-81 0.006210004165246696 82-83 0.012662526600691832 84-85 0.0055349656754292665 86-87 0.008508236060220067 88-89 0.008692750976019587 90-91 3.4413413406705147E-4 92-93 3.687711328907342E-5 94-95 3.7606546397170635E-4 96-97 0.0036710776274482223 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 99.0 20-21 281.0 22-23 630.0 24-25 1415.0 26-27 2273.0 28-29 4730.0 30-31 10303.0 32-33 13410.0 34-35 19961.0 36-37 28843.0 38-39 33117.0 40-41 33369.0 42-43 37091.0 44-45 43779.0 46-47 43529.0 48-49 39923.0 50-51 36349.0 52-53 35112.0 54-55 37721.0 56-57 40126.0 58-59 39167.0 60-61 37653.0 62-63 36129.0 64-65 38493.0 66-67 40286.0 68-69 42042.0 70-71 40358.0 72-73 37631.0 74-75 38616.0 76-77 38234.0 78-79 40707.0 80-81 41623.0 82-83 39198.0 84-85 39809.0 86-87 42874.0 88-89 45269.0 90-91 48715.0 92-93 50529.0 94-95 62281.0 96-97 141175.0 98-99 248357.0 100-101 2221650.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 90.25072301462258 #Duplication Level Percentage of deduplicated Percentage of total 1 93.36336363245972 84.2611107090661 2 4.963587430529972 8.959347087032455 3 0.9716296361839141 2.6307083150409882 4 0.30708471612281624 1.108584706272972 5 0.14344885806411112 0.6473181577954001 6 0.07705050963388177 0.4172318521861783 7 0.045742844053097025 0.2889827323975995 8 0.029072127119022878 0.20990243936518646 9 0.02334250692086588 0.18960103139237794 >10 0.07305160703325027 1.0174454225408274 >50 0.0018322959275589353 0.11115539188994045 >100 7.542760639975893E-4 0.13922538000772372 >500 3.9559887770994506E-5 0.01938677501224302 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.5820731310244607E-5 0.0 2.5820731310244607E-5 0.0 3 0.0 2.5820731310244607E-5 0.0 5.1641462620489215E-5 0.0 4 0.0 5.1641462620489215E-5 0.0 1.0328292524097843E-4 0.0 5 0.0 5.1641462620489215E-5 0.0 1.0328292524097843E-4 0.0 6 0.0 5.1641462620489215E-5 0.0 1.0328292524097843E-4 0.0 7 0.0 5.1641462620489215E-5 0.0 1.0328292524097843E-4 0.0 8 0.0 5.1641462620489215E-5 0.0 1.0328292524097843E-4 0.0 9 5.1641462620489215E-5 2.0656585048195686E-4 0.0 1.2910365655122304E-4 0.0 10-11 5.1641462620489215E-5 2.0656585048195686E-4 0.0 1.2910365655122304E-4 0.0 12-13 7.746219393073382E-5 2.0656585048195686E-4 0.0 1.4201402220634536E-4 0.0 14-15 1.0328292524097843E-4 3.4857987268830217E-4 0.0 1.5492438786146766E-4 0.0 16-17 2.0656585048195686E-4 3.614902383434245E-4 0.0 1.5492438786146766E-4 0.0 18-19 2.0656585048195686E-4 4.131317009639137E-4 0.0 1.5492438786146766E-4 0.0 20-21 2.0656585048195686E-4 4.6477316358440294E-4 0.0 1.5492438786146766E-4 0.0 22-23 2.0656585048195686E-4 5.164146262048922E-4 0.0 1.5492438786146766E-4 0.0 24-25 2.0656585048195686E-4 6.067871857907484E-4 0.0 1.8074511917171224E-4 2.5820731310244607E-5 26-27 2.0656585048195686E-4 6.971597453766044E-4 0.0 2.3238658179220147E-4 2.5820731310244607E-5 28-29 2.0656585048195686E-4 6.971597453766044E-4 0.0 7.100701110317267E-4 3.873109696536691E-5 30-31 2.3238658179220147E-4 8.004426706175828E-4 0.0 0.0021431206987503025 5.1641462620489215E-5 32-33 2.4529694744732377E-4 8.004426706175828E-4 0.0 0.004673552367154274 5.1641462620489215E-5 34-35 2.8402804441269073E-4 9.940981554444174E-4 0.0 0.008288454750588519 5.1641462620489215E-5 36-37 3.098487757229353E-4 0.0012135743715814965 0.0 0.01383991198229111 5.1641462620489215E-5 38-39 3.098487757229353E-4 0.0013168572968224749 0.0 0.021779786860191327 5.1641462620489215E-5 40-41 3.098487757229353E-4 0.0014201402220634534 0.0 0.030287717826916923 5.1641462620489215E-5 42-43 3.098487757229353E-4 0.0014846920503390649 0.0 0.03817595124219665 5.1641462620489215E-5 44-45 3.098487757229353E-4 0.0016396164382005327 0.0 0.047329400491678365 5.1641462620489215E-5 46-47 3.356695070331799E-4 0.0017299889977863887 0.0 0.05746403753094938 5.1641462620489215E-5 48-49 3.356695070331799E-4 0.0017428993634415108 0.0 0.06775359895808185 7.746219393073383E-5 50-51 3.356695070331799E-4 0.0019365548482683456 0.0 0.07770749087818114 7.746219393073383E-5 52-53 3.356695070331799E-4 0.00196237557957859 0.0 0.0867060157398014 7.746219393073383E-5 54-55 3.356695070331799E-4 0.0019752859452337127 0.0 0.09523976743783724 7.746219393073383E-5 56-57 3.4857987268830217E-4 0.002039837773509324 0.0 0.10296016609960038 7.746219393073383E-5 58-59 3.8731096965366913E-4 0.002039837773509324 0.0 0.11080966841791473 7.746219393073383E-5 60-61 4.0022133530879145E-4 0.0020527481391644465 0.0 0.11809111464740371 7.746219393073383E-5 62-63 4.131317009639137E-4 0.0020656585048195687 0.0 0.12494651881027366 1.0328292524097843E-4 64-65 4.26042066619036E-4 0.002246403623991281 0.0 0.1317890126074885 1.0328292524097843E-4 66-67 4.389524322741583E-4 0.00229804508661177 0.0 0.13917374176221842 1.0328292524097843E-4 68-69 4.389524322741583E-4 0.00229804508661177 0.0 0.1458613111715718 1.0328292524097843E-4 70-71 4.389524322741583E-4 0.00229804508661177 0.0 0.15199373485775486 1.0328292524097843E-4 72-73 4.389524322741583E-4 0.00229804508661177 0.0 0.15724825367938966 1.0328292524097843E-4 74-75 4.389524322741583E-4 0.0023109554522668923 0.0 0.16165068836778634 1.0328292524097843E-4 76-77 4.389524322741583E-4 0.002388417646197626 0.0 0.16547215660170256 1.0328292524097843E-4 78-79 4.389524322741583E-4 0.0024013280118527487 0.0 0.16813169192665778 1.0328292524097843E-4 80-81 4.389524322741583E-4 0.002414238377507871 0.0 0.16886758276899974 1.2910365655122304E-4 82-83 4.389524322741583E-4 0.002427148743162993 0.0 0.16939690776085975 1.5492438786146766E-4 84-85 4.389524322741583E-4 0.002427148743162993 0.0 0.16957765288003146 1.5492438786146766E-4 86-87 4.389524322741583E-4 0.0024529694744732378 0.0 0.16966802543961731 1.5492438786146766E-4 88 4.389524322741583E-4 0.0025304316684039716 0.0 0.16966802543961731 1.5492438786146766E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 4600 0.0 51.117302 1 GTATCAA 7950 0.0 32.898266 1 TCAACGC 9470 0.0 26.790207 4 ATCAACG 9535 0.0 26.477785 3 TATCAAC 9925 0.0 25.76986 2 CAACGCA 9875 0.0 25.607916 5 AACGCAG 10230 0.0 24.84025 6 GTACATG 12660 0.0 22.67913 1 TACATGG 12315 0.0 22.477034 2 ACGCAGA 11805 0.0 21.596003 7 ACATGGG 12485 0.0 21.311895 3 TGGTATC 2070 0.0 20.327349 2 CGCAGAG 13220 0.0 19.28448 8 GTGGTAT 2415 0.0 18.44835 1 GAGTACT 7660 0.0 18.445412 12-13 CATGGGG 9350 0.0 18.30996 4 GCAGAGT 14010 0.0 18.07928 9 CAGAGTA 13630 0.0 17.811771 10-11 GAGTACA 8870 0.0 17.300959 1 ATGGGGG 5240 0.0 16.768694 5 >>END_MODULE