##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138703_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6961092 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.171998301415925 33.0 31.0 34.0 30.0 34.0 2 32.43854843464215 34.0 31.0 34.0 31.0 34.0 3 32.45951310512776 34.0 31.0 34.0 31.0 34.0 4 36.087282282722306 37.0 35.0 37.0 35.0 37.0 5 35.843887568214875 37.0 35.0 37.0 35.0 37.0 6 35.93368626646509 37.0 35.0 37.0 35.0 37.0 7 35.892719992782744 37.0 35.0 37.0 35.0 37.0 8 35.90541369084046 37.0 35.0 37.0 35.0 37.0 9 37.69632609366462 39.0 37.0 39.0 35.0 39.0 10-11 37.60767771780634 39.0 37.0 39.0 35.0 39.0 12-13 37.567512827010475 39.0 37.0 39.0 35.0 39.0 14-15 38.86609845122001 40.0 38.0 41.0 35.0 41.0 16-17 38.82203431588032 40.0 38.0 41.0 35.0 41.0 18-19 38.82458104274444 40.0 38.0 41.0 35.0 41.0 20-21 38.84210155370003 40.0 38.0 41.0 35.0 41.0 22-23 38.767547049608396 40.0 38.0 41.0 34.0 41.0 24-25 38.6949735119029 40.0 38.0 41.0 34.0 41.0 26-27 38.540241550912825 40.0 38.0 41.0 34.0 41.0 28-29 38.41313302546466 40.0 38.0 41.0 34.0 41.0 30-31 38.27946832463434 40.0 38.0 41.0 34.0 41.0 32-33 38.128650171362615 40.0 38.0 41.0 33.5 41.0 34-35 38.085373943506376 40.0 37.5 41.0 33.0 41.0 36-37 38.100182191127516 40.0 38.0 41.0 33.0 41.0 38-39 38.06319793600474 40.0 37.0 41.0 33.0 41.0 40-41 38.09730197671526 40.0 37.5 41.0 33.0 41.0 42-43 38.1528397118297 40.0 38.0 41.0 33.0 41.0 44-45 38.13541270085486 40.0 37.5 41.0 33.0 41.0 46-47 38.04089451535569 40.0 37.0 41.0 33.0 41.0 48-49 37.95727289259717 40.0 37.0 41.0 33.0 41.0 50-51 37.86172421881382 40.0 37.0 41.0 33.0 41.0 52-53 37.69644928199551 40.0 36.5 41.0 32.5 41.0 54-55 37.57006905898626 39.5 36.0 41.0 32.0 41.0 56-57 37.40817056405477 39.0 36.0 41.0 32.0 41.0 58-59 37.17889361025809 39.0 35.0 41.0 31.5 41.0 60-61 36.98700834650742 39.0 35.0 40.5 31.0 41.0 62-63 36.75820693032436 38.0 35.0 40.0 31.0 41.0 64-65 36.452115265173646 38.0 35.0 40.0 31.0 41.0 66-67 36.119299008118674 37.0 35.0 40.0 30.5 41.0 68-69 35.860293358085556 37.0 34.0 39.5 30.0 41.0 70-71 35.469752437755886 36.0 34.0 39.0 30.0 41.0 72-73 35.17855770406428 36.0 34.0 39.0 30.0 40.0 74-75 34.85637142280079 35.0 34.0 38.0 29.0 40.0 76-77 33.49263557515222 34.5 32.0 36.5 28.0 39.0 78-79 34.249733366866835 35.0 33.5 37.0 29.0 39.0 80-81 34.207116137118675 35.0 34.0 36.5 29.0 39.0 82-83 33.97142200675003 35.0 34.0 36.0 29.0 37.5 84-85 33.77663641513864 35.0 33.0 36.0 29.0 37.0 86-87 33.55419767179177 35.0 33.0 35.0 29.0 37.0 88-89 33.44848928276807 35.0 33.0 35.0 29.0 36.0 90-91 33.35296518731422 35.0 33.0 35.0 29.0 36.0 92-93 33.18973065180825 35.0 33.0 35.0 29.0 36.0 94-95 33.21207904639033 35.0 33.0 35.0 29.0 35.5 96-97 33.26531203293161 35.0 33.0 35.0 29.0 35.0 98-99 33.35792580999554 35.0 33.0 35.0 29.5 35.0 100 32.18978916358929 34.0 31.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 6.0 20 30.0 21 188.0 22 848.0 23 3131.0 24 8424.0 25 18698.0 26 34256.0 27 55550.0 28 80995.0 29 108993.0 30 139836.0 31 174916.0 32 218139.0 33 278167.0 34 371605.0 35 520358.0 36 815910.0 37 1419563.0 38 1737579.0 39 932950.0 40 40950.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.301021161622344 19.844214097443334 13.706125418253343 24.14863932268098 2 15.545075399089683 20.70968175682781 40.27847929606447 23.46676354801804 3 19.07644662647757 24.877404292315056 29.879665431802945 26.16648364940443 4 13.114149331742778 17.071832982526306 37.6242405645551 32.189777121175815 5 13.805793688691374 37.38985205194817 35.062975751505654 13.741378507854801 6 31.7198221198628 36.71208482807008 17.873919781551514 13.694173270515602 7 27.819615083380594 31.96787228210746 22.103213116562745 18.109299517949196 8 25.209923960206243 36.380254707163765 20.40599377224148 18.003827560388512 9 25.718766538353467 16.53118504970197 20.878362188001535 36.87168622394302 10-11 25.024277800092282 26.372880864094313 28.09095182192679 20.511889513886615 12-13 25.42249118385449 23.776693369373657 28.497066264890623 22.303749181881233 14-15 22.430352881415732 25.30658982814765 26.052392354532884 26.210664935903733 16-17 22.29119299143337 28.466922019726532 26.762962534123652 22.478922454716443 18-19 22.30887050480011 27.642660088388432 28.374937437976683 21.673531968834777 20-21 23.00454264237536 26.79353061526618 28.37465260002185 21.827274142336606 22-23 22.746008702434178 26.69363318329772 28.186168674009853 22.374189440258245 24-25 22.508504670976688 26.834473301016565 28.29880857725509 22.358213450751656 26-27 22.489505276095173 26.98127513977212 28.21323493525627 22.315984648876437 28-29 22.446822765278778 27.080103515286314 28.201823593478746 22.27125012595616 30-31 22.66611646074881 26.94623398623107 28.0716375019835 22.316012051036616 32-33 22.391482688413692 27.112408149298506 28.078164429682644 22.41794473260516 34-35 22.580010312056036 27.143388682529373 28.043964761560343 22.232636243854248 36-37 22.66338820636224 27.024134001416193 27.944814285573717 22.367663506647848 38-39 22.39497252361477 27.233480825872043 28.040013936487924 22.331532714025265 40-41 22.72597622959204 27.086439644928912 27.871246623222806 22.316337502256246 42-43 22.52142339545519 27.16378050021572 27.739379909209006 22.575416195120084 44-45 22.625877937277686 27.2859206942574 27.570952127884436 22.51724924058048 46-47 22.71358299315119 27.23039322211886 27.372536055309897 22.68348772942005 48-49 22.599347610136565 27.394680415958412 27.32086125598105 22.685110717923973 50-51 22.6302649511554 27.473928270682972 27.276566655904706 22.61924012225692 52-53 22.78915040651753 27.393767893024375 27.150809936082286 22.666271764375807 54-55 22.72536242424088 27.24089516481447 27.258220411227267 22.77552199971738 56-57 22.778928993391403 27.443796397432003 27.131772270465365 22.64550233871123 58-59 22.708378762613524 27.46808573550877 27.17673012958922 22.64680537228849 60-61 22.772478472415898 27.381900557247533 27.22086850202289 22.624752468313677 62-63 22.772921824398928 27.477681691714523 27.13426606959017 22.61513041429638 64-65 22.699419577029552 27.44247048502234 27.13491075064977 22.723199187298334 66-67 22.7944281114688 27.443834800630047 27.011723000727418 22.750014087173735 68-69 22.724250237539913 27.413828064351197 27.118481809410593 22.743439888698298 70-71 22.729669808866625 27.23973888305219 27.133891295708256 22.896700012372932 72-73 22.81631229714829 27.230213202615626 27.082224212883116 22.87125028735296 74-75 22.604868598835935 27.361280837191256 27.130881793292584 22.90296877068023 76-77 22.790328973444314 27.292278733248615 27.04278938462593 22.87460290868114 78-79 22.67661857328793 27.303734421433646 27.038262945288032 22.98138405999039 80-81 22.756143307151408 27.272718790984573 27.062693030150843 22.908444871713172 82-83 22.785513691445907 27.258982833567103 27.172364824004298 22.783138650982696 84-85 22.862882871232777 27.207991584090124 27.098523743038466 22.830601801638633 86-87 22.704419815293043 27.25551790713728 27.17673654789311 22.86332572967657 88-89 22.767044205057296 27.193225667125997 27.181221591673165 22.85850853614354 90-91 22.774794417790055 27.223605916389186 27.17317116947443 22.828428496346323 92-93 22.830238783064516 27.130389883304453 27.229189741745984 22.810181591885048 94-95 22.623717653399346 27.214389814955453 27.334438838809184 22.827453692836013 96-97 22.67628203404936 27.35007405728315 27.36608557094864 22.607558337718846 98-99 23.851407282325788 29.285275764455847 27.505139094863125 19.358177858355237 100 22.78778137227268 30.344068376445936 21.178717120892408 25.689433130388974 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1213.0 1 1056.5 2 1410.0 3 2076.5 4 2926.0 5 4827.0 6 6499.5 7 7860.5 8 8964.0 9 9108.5 10 8362.0 11 7435.0 12 7964.5 13 10470.5 14 16183.5 15 24020.0 16 30692.0 17 34734.0 18 35997.0 19 35014.0 20 32790.0 21 30577.5 22 29813.0 23 31923.0 24 36872.5 25 45240.5 26 56895.0 27 69139.0 28 81392.0 29 95459.0 30 108371.5 31 120574.0 32 134444.0 33 148247.0 34 162418.0 35 175905.5 36 191312.5 37 206394.0 38 217786.5 39 228905.0 40 240835.5 41 251509.5 42 259884.5 43 268780.5 44 276848.0 45 284335.0 46 291461.5 47 296286.5 48 300866.0 49 303802.0 50 303261.5 51 299644.5 52 291356.5 53 279095.5 54 267399.0 55 253907.5 56 237762.5 57 219820.0 58 198327.5 59 174755.0 60 150051.0 61 125273.5 62 101755.0 63 81175.0 64 63076.5 65 48610.5 66 37842.0 67 28825.0 68 21442.5 69 15953.5 70 11572.0 71 8086.5 72 5736.0 73 3940.5 74 2692.5 75 1860.0 76 1232.0 77 787.0 78 501.0 79 320.0 80 219.0 81 148.0 82 108.0 83 80.0 84 55.5 85 37.0 86 27.5 87 28.0 88 23.5 89 15.0 90 9.0 91 5.0 92 2.5 93 2.0 94 2.5 95 2.0 96 2.0 97 2.0 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 1.5802118403262017E-4 18-19 0.0 20-21 8.044968500715967E-4 22-23 5.31588306120442E-4 24-25 7.256921684235244E-4 26-27 0.0024078542913210437 28-29 0.0020282036825705887 30-31 0.0026361938028845867 32-33 0.0013577502079055006 34-35 9.205813725070911E-4 36-37 0.0064938160067972974 38-39 0.0029376219480311177 40-41 7.776905612215045E-4 42-43 1.0460813791536902E-4 44-45 7.095917326222117E-4 46-47 0.0029025046399973847 48-49 2.394964394218865E-4 50-51 0.0013819884893632173 52-53 0.0027913639929184513 54-55 0.0016010661029214677 56-57 1.1274571821961947E-4 58-59 0.001808313992383414 60-61 4.037113763558935E-4 62-63 0.0010496546636156706 64-65 0.002939723703034334 66-67 0.003546176373685155 68-69 0.0018731787221399193 70-71 0.0013640643030405255 72-73 0.0011157494409298337 74-75 0.022914494152680098 76-77 0.007490657107680238 78-79 0.002042400416649685 80-81 0.005355085554022318 82-83 0.01040746059759071 84-85 0.00509372208824955 86-87 0.006871240161522807 88-89 0.00985739990660682 90-91 3.923693221518137E-4 92-93 1.0248946920703897E-5 94-95 3.765901519164673E-4 96-97 0.0037634780903208938 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 131.0 20-21 490.0 22-23 1067.0 24-25 2245.0 26-27 3648.0 28-29 7491.0 30-31 17689.0 32-33 23122.0 34-35 33322.0 36-37 49353.0 38-39 57028.0 40-41 58719.0 42-43 64564.0 44-45 76827.0 46-47 75646.0 48-49 69939.0 50-51 63509.0 52-53 62692.0 54-55 67217.0 56-57 70647.0 58-59 69880.0 60-61 67636.0 62-63 65331.0 64-65 69376.0 66-67 72752.0 68-69 74031.0 70-71 72950.0 72-73 69151.0 74-75 70438.0 76-77 70711.0 78-79 75129.0 80-81 75416.0 82-83 72465.0 84-85 73816.0 86-87 78662.0 88-89 85131.0 90-91 91306.0 92-93 96060.0 94-95 112883.0 96-97 257768.0 98-99 450675.0 100-101 3984179.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.78182975971299 #Duplication Level Percentage of deduplicated Percentage of total 1 90.99844293988555 78.97011383608104 2 6.375457911976877 11.065478063147852 3 1.5036702176466223 3.914737585276793 4 0.5084269572161532 1.7648888658552433 5 0.22884003765379093 0.9929578594938796 6 0.12270649937698869 0.6389216723606496 7 0.07054687577244283 0.4285530874354628 8 0.04310057932160289 0.2992277709785878 9 0.03526273810054988 0.2754148441232938 >10 0.11128819781496449 1.4600840762962874 >50 0.0018840716905280937 0.10600802430850045 >100 3.218160190365728E-4 0.0485197316784069 >500 2.5578787982851286E-5 0.012874689340288037 >1k 2.5578736919045267E-5 0.02221989362369849 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.4365562184783652E-5 0.0 0.0 0.0 3 0.0 2.8731124369567304E-5 0.0 0.0 0.0 4 0.0 1.0055893529348556E-4 0.0 1.4365562184783652E-5 0.0 5 0.0 1.0055893529348556E-4 0.0 1.4365562184783652E-5 0.0 6 0.0 1.0055893529348556E-4 0.0 1.4365562184783652E-5 0.0 7 0.0 1.0055893529348556E-4 0.0 1.4365562184783652E-5 0.0 8 0.0 1.2929005966305288E-4 0.0 1.4365562184783652E-5 0.0 9 0.0 3.878701789891586E-4 0.0 2.8731124369567304E-5 0.0 10-11 0.0 4.0223574117394223E-4 0.0 3.5913905461959134E-5 0.0 12-13 0.0 4.166013033587259E-4 0.0 7.182781092391825E-5 0.0 14-15 0.0 6.464502983152643E-4 0.0 8.619337310870191E-5 0.0 16-17 0.0 6.60815860500048E-4 0.0 1.364728407554447E-4 0.0 18-19 0.0 7.03912547054399E-4 0.0 1.7238674621740383E-4 0.0 20-21 0.0 7.613747957935335E-4 0.0 1.7956952730979566E-4 0.0 22-23 0.0 8.403853878098436E-4 0.0 2.1548343277175478E-4 0.0 24-25 0.0 9.337615420109374E-4 0.0 2.442145571413221E-4 0.0 26-27 0.0 9.624926663805047E-4 0.0 2.729456815108894E-4 0.0 28-29 0.0 9.696754474728965E-4 0.0 6.60815860500048E-4 0.0 30-31 0.0 0.0010917827260435574 0.0 0.001903436989483834 0.0 32-33 0.0 0.0010917827260435574 0.0 0.004309668655435096 0.0 34-35 7.182781092391826E-6 0.0012067072235218267 0.0 0.0072905228087777035 0.0 36-37 1.4365562184783652E-5 0.0013359972831848796 0.0 0.011743847086060636 0.0 38-39 1.4365562184783652E-5 0.0013862767508316224 0.0 0.01872551030786549 0.0 40-41 1.4365562184783652E-5 0.0016017601836033771 0.0 0.026339258265800823 0.0 42-43 1.4365562184783652E-5 0.0016376740890653363 0.0 0.03392427509936659 0.0 44-45 2.154834327717548E-5 0.0018459747407446993 0.0 0.042529246848052 0.0 46-47 2.8731124369567304E-5 0.002025544268054495 0.0 0.052017700671101605 0.0 48-49 2.8731124369567304E-5 0.002032727049146887 0.0 0.06062267241978701 0.0 50-51 2.8731124369567304E-5 0.0022841243873806005 0.0 0.0690624402033474 0.0 52-53 2.8731124369567304E-5 0.002298489949565384 0.0 0.07762431526547847 0.0 54-55 2.8731124369567304E-5 0.0023200382928425596 0.0 0.0862005558897943 0.0 56-57 2.8731124369567304E-5 0.002341586636119735 0.0 0.09409443231033292 0.0 58-59 2.8731124369567304E-5 0.0023631349793969106 0.0 0.10116228890524648 0.0 60-61 2.8731124369567304E-5 0.0024205972281360452 0.0 0.1086108328980568 0.0 62-63 2.8731124369567304E-5 0.0024852422579675717 0.0 0.11571460339843231 0.0 64-65 2.8731124369567304E-5 0.002686360128554543 0.0 0.1224951487496502 0.0 66-67 2.8731124369567304E-5 0.0026935429096469348 0.0 0.12929005966305285 0.0 68-69 2.8731124369567304E-5 0.0027797362827556367 0.0 0.13642256128779795 0.0 70-71 2.8731124369567304E-5 0.0027941018449404204 0.0 0.14242018349994512 0.0 72-73 2.8731124369567304E-5 0.002815650188217596 0.0 0.1474481302646194 0.0 74-75 2.8731124369567304E-5 0.0029090263424186896 0.0 0.1512334559003099 0.0 76-77 2.8731124369567304E-5 0.0030239508398969585 0.0 0.15468837360575036 0.0 78-79 2.8731124369567304E-5 0.0030598647453589176 0.0 0.15696531521203858 0.0 80-81 2.8731124369567304E-5 0.0030670475264513095 0.0 0.15776260391329405 0.0 82-83 2.8731124369567304E-5 0.003081413088636093 0.0 0.15820075355992996 0.0 84-85 2.8731124369567304E-5 0.0031101442130056604 0.0 0.15841623699270171 0.0 86-87 2.8731124369567304E-5 0.0031604236806524032 0.0 0.15855989261454956 0.0 88 2.8731124369567304E-5 0.0032322514915763215 0.0 0.15856707539564194 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7830 0.0 44.822674 1 GTATCAA 13975 0.0 35.17077 1 TCAACGC 16525 0.0 28.993044 4 ATCAACG 16715 0.0 28.68821 3 CAACGCA 17145 0.0 27.992811 5 TATCAAC 17410 0.0 27.804173 2 AACGCAG 17510 0.0 27.64538 6 ACGCAGA 20625 0.0 23.409962 7 CGCAGAG 21615 0.0 22.318626 8 TGGTATC 4100 0.0 22.181486 2 GTGGTAT 4395 0.0 21.821316 1 GTACATG 19940 0.0 21.042276 1 TACATGG 19900 0.0 20.461384 2 ACATGGG 20370 0.0 19.36017 3 GCAGAGT 25075 0.0 19.22248 9 GAGTACT 13805 0.0 18.236263 12-13 CAGAGTA 24000 0.0 17.258833 10-11 AGAGTAC 22250 0.0 17.213547 10-11 CATGGGG 16075 0.0 17.15247 4 GTACTTT 15725 0.0 16.1284 14-15 >>END_MODULE