##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138701_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6247050 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.18353911046014 33.0 31.0 34.0 30.0 34.0 2 32.44244115222385 34.0 31.0 34.0 31.0 34.0 3 32.464597850185285 34.0 31.0 34.0 31.0 34.0 4 36.094183174458344 37.0 35.0 37.0 35.0 37.0 5 35.845878614706145 37.0 35.0 37.0 35.0 37.0 6 35.94104433292514 37.0 35.0 37.0 35.0 37.0 7 35.90336911022003 37.0 35.0 37.0 35.0 37.0 8 35.91161332148774 37.0 35.0 37.0 35.0 37.0 9 37.70321319662881 39.0 37.0 39.0 35.0 39.0 10-11 37.61436173874068 39.0 37.0 39.0 35.0 39.0 12-13 37.579473511497426 39.0 37.0 39.0 35.0 39.0 14-15 38.880507679624785 40.0 38.0 41.0 35.0 41.0 16-17 38.83774117383405 40.0 38.0 41.0 35.0 41.0 18-19 38.83631241946198 40.0 38.0 41.0 35.0 41.0 20-21 38.84866557017525 40.0 38.0 41.0 35.0 41.0 22-23 38.77358436976391 40.0 38.0 41.0 34.0 41.0 24-25 38.70179564919681 40.0 38.0 41.0 34.0 41.0 26-27 38.54771985891277 40.0 38.0 41.0 34.0 41.0 28-29 38.42134746332738 40.0 38.0 41.0 34.0 41.0 30-31 38.296282427233564 40.0 38.0 41.0 34.0 41.0 32-33 38.14467736954512 40.0 38.0 41.0 33.5 41.0 34-35 38.106093219153806 40.0 37.5 41.0 33.0 41.0 36-37 38.116712863170946 40.0 38.0 41.0 33.0 41.0 38-39 38.08057319904064 40.0 37.5 41.0 33.0 41.0 40-41 38.11868650522179 40.0 37.5 41.0 33.0 41.0 42-43 38.18263337460304 40.0 38.0 41.0 33.0 41.0 44-45 38.16596862663465 40.0 38.0 41.0 33.0 41.0 46-47 38.07222064831788 40.0 37.0 41.0 33.0 41.0 48-49 37.991165277585125 40.0 37.0 41.0 33.0 41.0 50-51 37.89401855950386 40.0 37.0 41.0 33.0 41.0 52-53 37.72990756725354 40.0 37.0 41.0 33.0 41.0 54-55 37.60162354126932 39.5 36.0 41.0 32.0 41.0 56-57 37.441878629310835 39.0 36.0 41.0 32.0 41.0 58-59 37.217431033011216 39.0 35.5 41.0 31.5 41.0 60-61 37.02480515662741 39.0 35.0 40.5 31.0 41.0 62-63 36.79235715570276 38.5 35.0 40.0 31.0 41.0 64-65 36.4856852936348 38.0 35.0 40.0 31.0 41.0 66-67 36.156080168180964 37.0 35.0 40.0 30.5 41.0 68-69 35.89394679795374 37.0 34.0 39.5 30.0 41.0 70-71 35.50102306013955 36.0 34.0 39.0 30.0 41.0 72-73 35.208572894637626 36.0 34.0 39.0 30.0 40.0 74-75 34.885656688100134 35.0 34.0 38.0 29.5 40.0 76-77 33.513038970683766 34.5 32.0 36.5 28.0 39.0 78-79 34.26917192406327 35.0 33.5 37.0 29.0 39.0 80-81 34.222489311964154 35.0 34.0 36.5 30.0 39.0 82-83 33.9874052733344 35.0 34.0 36.0 29.0 37.5 84-85 33.79171576547786 35.0 33.5 36.0 29.0 37.0 86-87 33.56763044864843 35.0 33.0 35.0 29.0 37.0 88-89 33.46352708711636 35.0 33.0 35.0 29.0 36.0 90-91 33.36954337140719 35.0 33.0 35.0 29.0 36.0 92-93 33.20293887496578 35.0 33.0 35.0 29.0 36.0 94-95 33.226956014511686 35.0 33.0 35.0 29.0 35.5 96-97 33.27791985299454 35.0 33.0 35.0 29.0 35.0 98-99 33.368347832196584 35.0 33.0 35.0 30.0 35.0 100 32.216902331287805 34.0 31.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 8.0 20 24.0 21 163.0 22 792.0 23 2729.0 24 7595.0 25 16139.0 26 30342.0 27 48333.0 28 71258.0 29 96070.0 30 123790.0 31 155478.0 32 194572.0 33 247712.0 34 332636.0 35 466818.0 36 735506.0 37 1284736.0 38 1580467.0 39 817634.0 40 34245.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.610416116406945 19.63942981087073 13.460641422751538 24.28951264997079 2 15.670436446002514 20.735195012045686 39.815064710543375 23.779303831408424 3 19.18595176923508 24.77119600451413 29.746040130941804 26.296812095308987 4 13.122561849192818 17.04631786203088 37.459536901417465 32.37158338735883 5 13.861598674574399 37.37948311603076 34.9885305864368 13.770387622958037 6 31.80507599587005 36.583603460833515 17.919946214613297 13.691374328683139 7 27.984616739100854 31.93640198173538 21.95074475152272 18.128236527641047 8 25.479210187208363 36.11829583563442 20.385894142035042 18.016599835122175 9 25.79407880519605 16.370767002024955 20.679488718675216 37.15566547410378 10-11 25.125435205416956 26.29196180597242 28.059556110484145 20.523046878126475 12-13 25.49223233366149 23.655245275770163 28.40414275538054 22.44837963518781 14-15 22.511945638341295 25.252543200390587 25.8452469565635 26.39026420470462 16-17 22.3804963552724 28.44501093518328 26.605635071023663 22.568857638520658 18-19 22.362827254464108 27.63706069264693 28.21165990347444 21.788452149414525 20-21 23.133643466943717 26.81429762901468 28.14721848251176 21.904840421529848 22-23 22.87000221652761 26.68883354373936 27.979270463837018 22.461893775896012 24-25 22.60431513670172 26.850676234722247 28.06309645221969 22.481912176356342 26-27 22.564055040723396 27.023953304915953 28.01718658978879 22.39480506457186 28-29 22.500568424665037 27.062423807652625 28.029102381116296 22.40790538656604 30-31 22.705091578198953 26.956180682723534 27.909286086275877 22.42944165280164 32-33 22.51146785761553 27.078577603494324 27.883892140389182 22.52606239850096 34-35 22.64915531217247 27.13555458161419 27.90499965327221 22.31029045294113 36-37 22.735108400213186 27.046335191882363 27.75870866221472 22.459847745689732 38-39 22.50098582254377 27.20496731972728 27.88079413369184 22.41325272403711 40-41 22.75956296757119 27.044231772961403 27.74078598090438 22.45541927856303 42-43 22.574364984018448 27.15041678276841 27.616578955345922 22.65863927786722 44-45 22.687312822175187 27.212449540543602 27.490133244072968 22.610104393208243 46-47 22.761299578103422 27.243222770734203 27.253530504917066 22.741947146245302 48-49 22.650194937961977 27.343820218557745 27.236872736351835 22.769112107128443 50-51 22.663458861947145 27.462771415870257 27.190048580999953 22.683721141182644 52-53 22.831482606870225 27.37360529262478 27.05046613666439 22.744445963840604 54-55 22.776452407858606 27.279124316561564 27.14826162058182 22.79616165499801 56-57 22.760139689167882 27.397262961131453 27.08778080006876 22.7548165496319 58-59 22.72117648246773 27.442746770219667 27.088258904615454 22.74781784269715 60-61 22.812761809070143 27.405280258292763 27.12294572162509 22.659012211012 62-63 22.79594986593999 27.460342959297858 27.045414602280033 22.698292572482124 64-65 22.75521904444677 27.419690126319825 27.08331452064032 22.741776308593085 66-67 22.844753147045825 27.448100416191057 26.894098689955836 22.813047746807282 68-69 22.749841213926207 27.433353691499818 27.01512489773262 22.80168019684136 70-71 22.776794395311775 27.26324102189606 27.05974453756343 22.900220045228732 72-73 22.80451395840556 27.310346848188605 26.992729030651358 22.892410162754473 74-75 22.63953328726514 27.42372233672275 27.019507087506266 22.91723728850584 76-77 22.795725668250764 27.322043658739776 26.96926092006243 22.912969752947035 78-79 22.666670989780666 27.368503284232553 26.970141839006086 22.994683886980695 80-81 22.733130185166623 27.358105743303753 26.98650727011914 22.92225680141048 82-83 22.7466101171721 27.386759335210982 27.048309818992134 22.818320728624787 84-85 22.83453792397965 27.376392921130034 26.959658645041777 22.82941050984854 86-87 22.696744030701556 27.387882521806006 27.0541583191041 22.861215128388338 88-89 22.73371140965618 27.33152103734198 27.019450053492456 22.915317499509385 90-91 22.72293534225069 27.390168383178132 27.017034837537256 22.86986143703392 92-93 22.82032544325836 27.359108519705483 27.03658250304507 22.78398353399109 94-95 22.629230186443117 27.43627964232356 27.09327428222008 22.84121588901325 96-97 22.651992014320317 27.539274626242577 27.18464740359393 22.624085955843167 98-99 23.825378868763096 29.495109644576097 27.342003802259747 19.337507684401068 100 22.763971126594885 30.546098066677953 21.017594044145614 25.672336762581544 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1306.0 1 1109.0 2 1344.5 3 1855.0 4 2483.0 5 4011.0 6 5405.0 7 6498.0 8 7296.0 9 7310.5 10 6599.0 11 5841.0 12 6201.0 13 8122.0 14 12825.0 15 19044.0 16 24122.5 17 27363.0 18 28390.0 19 27514.5 20 25900.5 21 24210.5 22 23441.0 23 24875.0 24 28791.0 25 35437.0 26 44312.0 27 54071.0 28 64731.5 29 77214.0 30 90090.5 31 102949.0 32 116577.0 33 130122.5 34 143859.5 35 157299.0 36 171389.5 37 185195.0 38 196989.5 39 208267.0 40 219879.0 41 229983.5 42 237978.0 43 245828.0 44 253867.5 45 261040.0 46 265815.0 47 270154.0 48 273683.0 49 275311.5 50 275087.0 51 271338.5 52 263841.0 53 253941.5 54 242508.0 55 228540.5 56 213031.0 57 196089.0 58 176696.0 59 154998.0 60 131615.5 61 109361.0 62 89230.0 63 70803.5 64 54817.5 65 42673.0 66 33504.0 67 25542.5 68 18989.0 69 14040.0 70 10099.0 71 7044.5 72 4993.0 73 3369.0 74 2225.0 75 1505.5 76 1000.5 77 636.5 78 418.0 79 292.5 80 207.0 81 142.5 82 95.0 83 59.0 84 38.5 85 27.5 86 20.0 87 16.5 88 11.5 89 6.5 90 4.0 91 3.5 92 3.5 93 2.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 2.0009444457784077E-4 18-19 0.0 20-21 8.804472672117435E-4 22-23 5.203089386354041E-4 24-25 7.766218566530592E-4 26-27 0.0023147087647849016 28-29 0.001955486867743611 30-31 0.0024959234587752896 32-33 0.0012470372807829142 34-35 0.0012674173006174986 36-37 0.0065155328111440765 38-39 0.0032117373390535497 40-41 7.496240141311541E-4 42-43 1.1627463703833882E-4 44-45 7.378683336006709E-4 46-47 0.00308544364822857 48-49 2.9131579892115476E-4 50-51 0.0013069475340193681 52-53 0.002839685345388744 54-55 0.001579185105196666 56-57 1.7832931468222697E-4 58-59 0.002028488818203316 60-61 4.3748582728205367E-4 62-63 0.0013724520864541651 64-65 0.003295409745569233 66-67 0.003983026469235358 68-69 0.0018775671799732014 70-71 0.0017175661277433053 72-73 0.0012305317186152886 74-75 0.022580898911491967 76-77 0.007923027388765247 78-79 0.0025127468710475533 80-81 0.005925260185157706 82-83 0.011513183063045919 84-85 0.005517468378734643 86-87 0.007851717638113478 88-89 0.009262985609034245 90-91 2.539293356612397E-4 92-93 2.247489245483024E-5 94-95 4.6993095224286585E-4 96-97 0.0037340186651460454 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 148.0 20-21 430.0 22-23 953.0 24-25 2158.0 26-27 3174.0 28-29 6730.0 30-31 14440.0 32-33 19167.0 34-35 28007.0 36-37 41520.0 38-39 48216.0 40-41 49191.0 42-43 54266.0 44-45 63680.0 46-47 64187.0 48-49 60063.0 50-51 55021.0 52-53 53851.0 54-55 58782.0 56-57 61745.0 58-59 60688.0 60-61 58249.0 62-63 56730.0 64-65 59798.0 66-67 63722.0 68-69 64367.0 70-71 63008.0 72-73 60112.0 74-75 61415.0 76-77 62162.0 78-79 65304.0 80-81 66533.0 82-83 63677.0 84-85 64609.0 86-87 68343.0 88-89 74246.0 90-91 78851.0 92-93 83521.0 94-95 102466.0 96-97 234500.0 98-99 410516.0 100-101 3638504.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.66173561350853 #Duplication Level Percentage of deduplicated Percentage of total 1 91.28317086399498 80.02041190242252 2 6.344990383849845 11.124257389985983 3 1.3778311626490711 3.623492133005878 4 0.4698938854086084 1.6476685419637478 5 0.21193820436574076 0.9289435418755652 6 0.1041816847213676 0.5479648381088656 7 0.06168412665214063 0.3785136321491089 8 0.03691876256210816 0.25890902423179385 9 0.02656111692154449 0.20955542482583284 >10 0.08079129071077706 1.1109586194029353 >50 0.0016972084354880902 0.09563208627667374 >100 3.143000579350293E-4 0.03721357222950472 >500 2.700967040935916E-5 0.016479293521575403 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.600755556622726E-5 2 0.0 1.600755556622726E-5 0.0 0.0 1.600755556622726E-5 3 0.0 1.600755556622726E-5 0.0 0.0 1.600755556622726E-5 4 0.0 8.00377778311363E-5 0.0 1.600755556622726E-5 4.802266669868178E-5 5 0.0 1.1205288896359081E-4 0.0 1.600755556622726E-5 4.802266669868178E-5 6 0.0 1.1205288896359081E-4 0.0 1.600755556622726E-5 4.802266669868178E-5 7 0.0 1.1205288896359081E-4 0.0 1.600755556622726E-5 6.403022226490904E-5 8 0.0 1.2806044452981808E-4 0.0 1.600755556622726E-5 6.403022226490904E-5 9 0.0 3.521662224569997E-4 0.0 4.802266669868178E-5 9.604533339736356E-5 10-11 0.0 3.521662224569997E-4 0.0 1.1205288896359081E-4 9.604533339736356E-5 12-13 0.0 3.521662224569997E-4 0.0 1.2806044452981808E-4 9.604533339736356E-5 14-15 0.0 5.202455559023859E-4 0.0 1.7608311122849985E-4 1.2005666674670446E-4 16-17 0.0 5.362531114686132E-4 0.0 2.0809822236095437E-4 1.2806044452981808E-4 18-19 0.0 5.682682226010677E-4 0.0 2.3210955571029525E-4 1.7608311122849985E-4 20-21 0.0 5.922795559504086E-4 0.0 2.481171112765225E-4 1.920906667947271E-4 22-23 0.0 6.242946670828631E-4 0.0 3.121473335414316E-4 2.401133334934089E-4 24-25 0.0 6.723173337815449E-4 0.0 3.521662224569997E-4 2.721284446258634E-4 26-27 0.0 7.203400004802266E-4 0.0 4.482115558543633E-4 2.721284446258634E-4 28-29 0.0 7.203400004802266E-4 0.0 8.564042227931583E-4 2.801322224089771E-4 30-31 0.0 7.683626671789084E-4 0.0 0.0019289104457303847 2.881360001920907E-4 32-33 0.0 8.323928894438175E-4 0.0 0.004081926669387951 3.0414355575831794E-4 34-35 0.0 9.444457784074083E-4 0.0 0.007451517116078789 3.201511113245452E-4 36-37 0.0 0.001056498667370999 0.0 0.013022146453125875 3.201511113245452E-4 38-39 0.0 0.0010725062229372264 0.0 0.02088185623614346 3.521662224569997E-4 40-41 0.0 0.0012645968897319535 0.0 0.02946190601964127 3.521662224569997E-4 42-43 0.0 0.0012886082230812944 0.0 0.037721804691814534 3.601700002401133E-4 44-45 0.0 0.0014326762231773398 0.0 0.04736635692046646 3.6817377802322697E-4 46-47 0.0 0.0015527328899240442 0.0 0.058243490927717884 3.841813335894542E-4 48-49 0.0 0.0015607366677071579 0.0 0.06873644360137984 4.2420022250502234E-4 50-51 0.0 0.0017848424456343394 0.0 0.07910933960829511 4.32204000288136E-4 52-53 0.0 0.0018008500012005667 0.0 0.08903402405935601 4.4020777807124965E-4 54-55 0.0 0.0018728840012485893 0.0 0.09895870851041691 4.4821155585436325E-4 56-57 0.0 0.0019529217790797257 0.0 0.10897143451709207 4.5621533363747685E-4 58-59 0.0 0.0019769331124290662 0.0 0.11794366941196244 4.7222288920370416E-4 60-61 0.0 0.0020169520013446347 0.0 0.12629160963974997 5.042380003361587E-4 62-63 0.0 0.002056970890260203 0.0 0.1342953874228636 5.60264444817954E-4 64-65 0.0 0.002273072890404271 0.0 0.14195500276130335 5.60264444817954E-4 66-67 0.0 0.002273072890404271 0.0 0.14944653876629768 5.682682226010677E-4 68-69 0.0 0.002289080445970498 0.0 0.157426305216062 5.762720003841814E-4 70-71 0.0 0.0023050880015367254 0.0 0.16363723677575814 5.922795559504086E-4 72-73 0.0 0.0023210955571029528 0.0 0.16846351477897567 6.403022226490904E-4 74-75 0.0 0.0023691182238016343 0.0 0.17232933944821954 6.483060004322039E-4 76-77 0.0 0.0025211900016807935 0.0 0.17645128500652307 6.563097782153176E-4 78-79 0.0 0.0025932240017288158 0.0 0.17880439567475848 6.563097782153176E-4 80-81 0.0 0.002617235335078157 0.0 0.17960477345306985 6.803211115646586E-4 82-83 0.0 0.0026252391128612704 0.0 0.18022106434236962 7.203400004802266E-4 84-85 0.0 0.0026492504462106116 0.0 0.180461177675863 7.283437782633403E-4 86-87 0.0 0.0027532995573910884 0.0 0.1805732305648266 7.363475560464539E-4 88 0.0 0.0028173297796559977 0.0 0.18058123434260973 7.523551116126811E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6900 0.0 46.190285 1 GTATCAA 11680 0.0 33.243855 1 TCAACGC 13730 0.0 27.460999 4 ATCAACG 13955 0.0 27.04809 3 CAACGCA 14370 0.0 26.179977 5 TATCAAC 14720 0.0 25.783913 2 AACGCAG 14710 0.0 25.773119 6 GTACATG 19030 0.0 22.111637 1 TACATGG 19015 0.0 21.55942 2 ACGCAGA 17615 0.0 21.47541 7 ACATGGG 19545 0.0 20.825583 3 CGCAGAG 18210 0.0 20.727959 8 GTGGTAT 3680 0.0 18.906317 1 CATGGGG 14710 0.0 18.041183 4 TGGTATC 3680 0.0 17.887413 2 GCAGAGT 21460 0.0 17.51117 9 GAGTACT 11235 0.0 16.946554 12-13 CAGAGTA 20720 0.0 16.538055 10-11 AGAGTAC 19030 0.0 16.222498 10-11 ATGGGGG 8880 0.0 15.388602 5 >>END_MODULE