##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138700_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5284316 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.172423072352224 33.0 31.0 34.0 30.0 34.0 2 32.43311433305654 34.0 31.0 34.0 31.0 34.0 3 32.454331080881616 34.0 31.0 34.0 31.0 34.0 4 36.08433049802472 37.0 35.0 37.0 35.0 37.0 5 35.834271076900016 37.0 35.0 37.0 35.0 37.0 6 35.929053069498494 37.0 35.0 37.0 35.0 37.0 7 35.89263813897579 37.0 35.0 37.0 35.0 37.0 8 35.904626634743266 37.0 35.0 37.0 35.0 37.0 9 37.69120714961028 39.0 37.0 39.0 35.0 39.0 10-11 37.60463397722619 39.0 37.0 39.0 35.0 39.0 12-13 37.5664321550793 39.0 37.0 39.0 35.0 39.0 14-15 38.864843434798374 40.0 38.0 41.0 35.0 41.0 16-17 38.82186228075687 40.0 38.0 41.0 35.0 41.0 18-19 38.82195888739432 40.0 38.0 41.0 35.0 41.0 20-21 38.833754085864086 40.0 38.0 41.0 35.0 41.0 22-23 38.7588837067408 40.0 38.0 41.0 34.0 41.0 24-25 38.68542704694383 40.0 38.0 41.0 34.0 41.0 26-27 38.529931879326384 40.0 38.0 41.0 34.0 41.0 28-29 38.40296015727674 40.0 38.0 41.0 34.0 41.0 30-31 38.271110400003764 40.0 38.0 41.0 34.0 41.0 32-33 38.11838157932451 40.0 38.0 41.0 33.5 41.0 34-35 38.07880951832479 40.0 37.5 41.0 33.0 41.0 36-37 38.09317000087752 40.0 37.5 41.0 33.0 41.0 38-39 38.055081535512315 40.0 37.0 41.0 33.0 41.0 40-41 38.09406847994734 40.0 37.5 41.0 33.0 41.0 42-43 38.15220504149343 40.0 38.0 41.0 33.0 41.0 44-45 38.1322316404629 40.0 37.5 41.0 33.0 41.0 46-47 38.036142430793404 40.0 37.0 41.0 33.0 41.0 48-49 37.95827886079482 40.0 37.0 41.0 33.0 41.0 50-51 37.861444940826544 40.0 37.0 41.0 33.0 41.0 52-53 37.696130029654896 40.0 36.5 41.0 32.5 41.0 54-55 37.569161262587095 39.5 36.0 41.0 32.0 41.0 56-57 37.406751570480466 39.0 36.0 41.0 32.0 41.0 58-59 37.18335798855361 39.0 35.0 41.0 31.5 41.0 60-61 36.991503244912366 39.0 35.0 40.5 31.0 41.0 62-63 36.75852685004301 38.0 35.0 40.0 31.0 41.0 64-65 36.45348234220605 38.0 35.0 40.0 31.0 41.0 66-67 36.12105625486351 37.0 35.0 40.0 30.5 41.0 68-69 35.860738610176895 37.0 34.0 39.5 30.0 41.0 70-71 35.468175330652585 36.0 34.0 39.0 30.0 41.0 72-73 35.17860793627402 36.0 34.0 39.0 30.0 40.0 74-75 34.858302670581146 35.0 34.0 38.0 29.0 40.0 76-77 33.485043709850686 34.5 32.0 36.5 28.0 39.0 78-79 34.25028716207877 35.0 33.5 37.0 29.0 39.0 80-81 34.2037222391359 35.0 34.0 36.5 29.0 39.0 82-83 33.970092247705736 35.0 34.0 36.0 29.0 37.5 84-85 33.77419973666687 35.0 33.0 36.0 29.0 37.0 86-87 33.549322889147106 35.0 33.0 35.0 29.0 37.0 88-89 33.44413390499065 35.0 33.0 35.0 29.0 36.0 90-91 33.34631312973649 35.0 33.0 35.0 29.0 36.0 92-93 33.183153589417444 35.0 33.0 35.0 29.0 36.0 94-95 33.20695609892256 35.0 33.0 35.0 29.0 35.5 96-97 33.25770341728116 35.0 33.0 35.0 29.0 35.0 98-99 33.3520632810599 35.0 33.0 35.0 29.5 35.0 100 32.17832737347358 34.0 31.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 1.0 15 0.0 16 0.0 17 0.0 18 2.0 19 7.0 20 27.0 21 161.0 22 674.0 23 2443.0 24 6481.0 25 14423.0 26 26199.0 27 42382.0 28 61773.0 29 83046.0 30 106456.0 31 133362.0 32 166086.0 33 210632.0 34 282381.0 35 395968.0 36 622021.0 37 1080972.0 38 1322700.0 39 697186.0 40 28933.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.62971782913815 19.627951848451154 13.5041507737236 24.238179548687096 2 15.649612930036735 20.69802411513619 39.89341288446792 23.758950070359152 3 19.177903062572337 24.68168065649367 29.8186936587441 26.321722622189892 4 13.083812550195711 17.046860937158186 37.606418692599 32.2629078200471 5 13.811286077516938 37.33279766009451 35.08420011218103 13.771716150207519 6 31.753740692267456 36.713436516665546 17.850616806413544 13.682205984653454 7 27.900905244879375 31.951325393863648 21.977357145182083 18.17041221607489 8 25.468007590764824 36.12189354308107 20.36959939564553 18.04049947050858 9 25.715172976029443 16.394704631592813 20.745844873773635 37.14427751860411 10-11 25.097912388282605 26.285180522890762 28.115701256321536 20.501205832505097 12-13 25.438855284203292 23.701336180500938 28.51096527913925 22.34884325615652 14-15 22.464799606987924 25.252653323533263 25.93575970854128 26.346787360937533 16-17 22.34921560692378 28.419338121534725 26.711195987138147 22.520250284403343 18-19 22.31643603448393 27.66701499304735 28.27294961164321 21.74359936082551 20-21 23.03221248624876 26.795524433916363 28.248221209829016 21.924041870005862 22-23 22.79750347751278 26.675274451204057 28.090638002819862 22.436584068463304 24-25 22.554936752089183 26.79569821636755 28.20915601334329 22.440209018199976 26-27 22.4996513067074 26.94333423887853 28.147450533607266 22.409563920806804 28-29 22.466505453567944 27.07936613518648 28.103269241319634 22.35085916992594 30-31 22.66317820821204 26.936716952040562 27.99417687702814 22.40592796271926 32-33 22.432391676121295 27.076257822367154 28.02563096265957 22.46571953885198 34-35 22.598048852868214 27.1055017888173 27.978593964492532 22.317855393821954 36-37 22.667422214448727 27.059758863399125 27.870113618233596 22.40270530391855 38-39 22.426325687875963 27.21646772422191 27.997626521446662 22.359580066455464 40-41 22.67646866652949 27.051062132534714 27.86905485173638 22.403414349199416 42-43 22.53270688031847 27.14044315082485 27.70091474716177 22.62593522169491 44-45 22.62978946251692 27.2362380992304 27.56360487279423 22.570367565458454 46-47 22.664874528202166 27.237309437082036 27.391755278850553 22.706060755865245 48-49 22.600992783029422 27.37876873202844 27.31088040051068 22.709358084431464 50-51 22.609195022341726 27.44413644396254 27.27603196643947 22.670636567256267 52-53 22.780159546238558 27.361070800716465 27.126084234443415 22.732685418601566 54-55 22.76553233777508 27.245952778895692 27.209675723960192 22.778839159369028 56-57 22.70048958154969 27.38791913977912 27.21332408537611 22.698267193295077 58-59 22.695647642100486 27.45404896770498 27.165902925197067 22.684400464997466 60-61 22.727387825108348 27.384264945380178 27.229132737808605 22.659214491702873 62-63 22.735966147439036 27.48888592097795 27.13909172955885 22.636056202024164 64-65 22.73600196023752 27.442761351918143 27.103611954352825 22.717624733491512 66-67 22.77626352756706 27.44426982462044 27.0308355140923 22.748631133720203 68-69 22.701626492816544 27.394282043801972 27.121584256368536 22.78250720701295 70-71 22.715174735289178 27.221898816748823 27.169397034578235 22.893529413383757 72-73 22.75591312718473 27.275696387505597 27.11145462632677 22.8569358589829 74-75 22.636553473614576 27.38850598382701 27.11915207823064 22.855788464327766 76-77 22.76034878530931 27.278139256386524 27.06452437788177 22.896987580422394 78-79 22.68317501674854 27.315330331332994 27.056128759923464 22.945365891995007 80-81 22.703277404899833 27.32525460080119 27.055245294601814 22.91622269969716 82-83 22.765323434502967 27.280219378590864 27.170525127466604 22.783932059439564 84-85 22.845605725169897 27.221830242680333 27.157941553652876 22.774622478496898 86-87 22.70160917479006 27.242032899782746 27.223106825842674 22.833251099584515 88-89 22.737873915600616 27.197290742884313 27.206409728573718 22.858425612941353 90-91 22.726861362990018 27.22108790115701 27.225376134638957 22.826674601214016 92-93 22.772656560096546 27.159378816605095 27.25853603384259 22.809428589455766 94-95 22.62751303701705 27.21034010994411 27.34552513641864 22.8166217166202 96-97 22.636672795796045 27.330696262542126 27.386940038010906 22.645690903650927 98-99 23.81921161370354 29.24886216927074 27.570754513405504 19.36117170362022 100 22.78624454098372 30.302649862145802 21.21502468132588 25.696080915544595 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 806.0 1 720.0 2 998.5 3 1446.0 4 1936.0 5 3167.0 6 4338.0 7 5331.5 8 6227.5 9 6364.5 10 5682.5 11 4924.0 12 5209.5 13 6846.5 14 11098.0 15 16954.5 16 21602.5 17 24241.0 18 25011.5 19 24349.5 20 22937.5 21 21682.0 22 21372.0 23 22695.5 24 26025.0 25 31894.0 26 39852.0 27 48783.5 28 58400.5 29 69175.5 30 79955.5 31 90651.5 32 102039.5 33 113456.5 34 124454.0 35 134741.5 36 146326.5 37 157666.5 38 167420.5 39 176017.0 40 184142.5 41 191700.0 42 198101.0 43 204680.0 44 211045.0 45 217652.5 46 223037.5 47 226325.0 48 229566.0 49 230797.0 50 229603.5 51 226413.5 52 219568.5 53 211109.5 54 202990.0 55 193409.5 56 181218.5 57 166820.0 58 150855.0 59 133497.0 60 114571.0 61 95373.0 62 77347.0 63 61648.5 64 48135.5 65 37453.0 66 29170.5 67 22263.5 68 16767.0 69 12538.5 70 9147.0 71 6541.5 72 4661.0 73 3199.5 74 2234.0 75 1549.0 76 1034.5 77 676.0 78 457.0 79 312.0 80 201.5 81 131.0 82 91.5 83 60.0 84 40.0 85 30.5 86 22.5 87 16.5 88 13.0 89 11.5 90 10.5 91 8.5 92 5.0 93 2.5 94 1.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 1.4192943798213431E-4 18-19 0.0 20-21 8.042979411013564E-4 22-23 5.110136210680695E-4 24-25 6.436297080921576E-4 26-27 0.002253554200582421 28-29 0.001857128278956586 30-31 0.0029036957974412176 32-33 0.0014936900633077226 34-35 0.001145777128588944 36-37 0.007083958539068896 38-39 0.002804765586880274 40-41 6.533757045852444E-4 42-43 6.884670749473126E-5 44-45 7.450031891103182E-4 46-47 0.0037075273354784744 48-49 2.5399640483328743E-4 50-51 0.0016527861714563416 52-53 0.0034205079143297514 54-55 0.0018530792890750296 56-57 1.5874176619687217E-4 58-59 0.001990421790709717 60-61 3.8956038759527185E-4 62-63 0.0014547656481921638 64-65 0.0036930006359922056 66-67 0.004250956800882051 68-69 0.0019817760405088612 70-71 0.0016284691266336584 72-73 0.001637049994113586 74-75 0.024912202114105875 76-77 0.0088879306898462 78-79 0.0023142461861343387 80-81 0.005425063500123896 82-83 0.010901334744560667 84-85 0.0047964443029228305 86-87 0.007017183694714049 88-89 0.009932887051822123 90-91 3.288511794510632E-4 92-93 4.0187994077897194E-5 94-95 4.2373286786505615E-4 96-97 0.00339923351498163 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 139.0 20-21 389.0 22-23 826.0 24-25 1815.0 26-27 2926.0 28-29 6165.0 30-31 12750.0 32-33 17269.0 34-35 24483.0 36-37 37066.0 38-39 42409.0 40-41 43123.0 42-43 47571.0 44-45 56720.0 46-47 56092.0 48-49 52070.0 50-51 47158.0 52-53 47116.0 54-55 50340.0 56-57 52515.0 58-59 51934.0 60-61 50253.0 62-63 48455.0 64-65 51608.0 66-67 54221.0 68-69 55151.0 70-71 54318.0 72-73 51670.0 74-75 52482.0 76-77 53077.0 78-79 55919.0 80-81 56407.0 82-83 54073.0 84-85 55446.0 86-87 58750.0 88-89 63377.0 90-91 68390.0 92-93 72224.0 94-95 85508.0 96-97 196813.0 98-99 344611.0 100-101 3050687.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.62773667349465 #Duplication Level Percentage of deduplicated Percentage of total 1 91.92927926981763 81.47483955709546 2 5.967724044178939 10.578117502551471 3 1.254244227265972 3.3348248129513807 4 0.40598992530741135 1.4392787276894805 5 0.18261454159205165 0.8092356752485645 6 0.08352890737114177 0.44417868042685665 7 0.05139262714006425 0.31883685575900955 8 0.035571010692423084 0.25220625350865084 9 0.018728553577829123 0.1493882383294148 >10 0.06859624478547216 0.9529900809697569 >50 0.0015145765079442395 0.08919507048749795 >100 8.160717631136723E-4 0.15690854498240736 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.8923925064284575E-5 2 0.0 5.677177519285372E-5 0.0 0.0 1.8923925064284575E-5 3 0.0 5.677177519285372E-5 0.0 1.8923925064284575E-5 1.8923925064284575E-5 4 0.0 9.461962532142287E-5 0.0 1.8923925064284575E-5 1.8923925064284575E-5 5 0.0 9.461962532142287E-5 0.0 1.8923925064284575E-5 1.8923925064284575E-5 6 9.461962532142287E-5 9.461962532142287E-5 0.0 1.8923925064284575E-5 1.8923925064284575E-5 7 9.461962532142287E-5 9.461962532142287E-5 0.0 1.8923925064284575E-5 1.8923925064284575E-5 8 9.461962532142287E-5 9.461962532142287E-5 0.0 1.8923925064284575E-5 1.8923925064284575E-5 9 9.461962532142287E-5 2.4601102583569944E-4 0.0 1.8923925064284575E-5 1.8923925064284575E-5 10-11 1.0408158785356515E-4 2.4601102583569944E-4 0.0 2.8385887596426862E-5 1.8923925064284575E-5 12-13 1.32467475449992E-4 2.4601102583569944E-4 0.0 5.677177519285372E-5 2.8385887596426862E-5 14-15 1.32467475449992E-4 3.027828010285532E-4 0.0 5.677177519285372E-5 6.623373772499602E-5 16-17 2.4601102583569944E-4 3.027828010285532E-4 0.0 7.56957002571383E-5 7.56957002571383E-5 18-19 2.4601102583569944E-4 3.2170672609283776E-4 0.0 7.56957002571383E-5 1.1354355038570745E-4 20-21 2.4601102583569944E-4 3.4063065115712233E-4 0.0 7.56957002571383E-5 1.7031532557856117E-4 22-23 2.4601102583569944E-4 3.879404638178338E-4 0.0 7.56957002571383E-5 1.7031532557856117E-4 24-25 2.4601102583569944E-4 4.3525027647854517E-4 0.0 9.461962532142287E-5 1.8923925064284573E-4 26-27 2.4601102583569944E-4 4.5417420154282974E-4 0.0 1.513914005142766E-4 2.1762513823927259E-4 28-29 2.4601102583569944E-4 4.5417420154282974E-4 0.0 5.771797144606795E-4 2.5547298836784175E-4 30-31 2.8385887596426863E-4 5.487938268642526E-4 0.0 0.0016936912932534692 2.933208384964109E-4 32-33 3.3116868862498E-4 5.677177519285373E-4 0.0 0.00413487762654618 3.027828010285532E-4 34-35 3.9740242634997604E-4 6.717993397821025E-4 0.0 0.007815581051549529 3.027828010285532E-4 36-37 4.163263514142606E-4 7.758809276356676E-4 0.0 0.013606302121220607 3.027828010285532E-4 38-39 4.3525027647854517E-4 8.137287777642367E-4 0.0 0.02259516652675578 3.122447635606955E-4 40-41 4.5417420154282974E-4 9.461962532142287E-4 0.0 0.03211390083409092 3.2170672609283776E-4 42-43 4.5417420154282974E-4 9.745821408106555E-4 0.0 0.04074321066340469 3.2170672609283776E-4 44-45 4.5417420154282974E-4 0.0011448974663892167 0.0 0.05071611917228266 3.2170672609283776E-4 46-47 4.6363616407497205E-4 0.0013057508294356355 0.0 0.06172984355969628 3.2170672609283776E-4 48-49 4.825600891392566E-4 0.0013057508294356355 0.0 0.07329236177397415 3.2170672609283776E-4 50-51 5.014840142035412E-4 0.0015044520426106237 0.0 0.08388975980997351 3.2170672609283776E-4 52-53 5.109459767356835E-4 0.0015139140051427659 0.0 0.09382482046872291 3.595545762214069E-4 54-55 5.109459767356835E-4 0.0015139140051427659 0.0 0.10426136514167586 3.595545762214069E-4 56-57 5.109459767356835E-4 0.0015517618552713351 0.0 0.11373278963635028 3.7847850128569147E-4 58-59 5.109459767356835E-4 0.0015517618552713351 0.0 0.12203093077703907 3.9740242634997604E-4 60-61 5.582557893963949E-4 0.0015990716679320466 0.0 0.13054669705596714 3.9740242634997604E-4 62-63 6.6233737724996E-4 0.001684229330721327 0.0 0.13820142474447022 3.9740242634997604E-4 64-65 6.6233737724996E-4 0.0018734685813641728 0.0 0.14610216345880905 3.9740242634997604E-4 66-67 6.6233737724996E-4 0.0018829305438963152 0.0 0.15424891319898357 4.068643888821183E-4 68-69 6.6233737724996E-4 0.0019207783940248843 0.0 0.16216857583838667 4.163263514142606E-4 70-71 6.6233737724996E-4 0.001949164281621311 0.0 0.1689338790488684 4.163263514142606E-4 72-73 7.191091524428138E-4 0.0019586262441534533 0.0 0.17443127928004304 4.163263514142606E-4 74-75 7.191091524428138E-4 0.00198701213174988 0.0 0.17832960784328566 4.257883139464029E-4 76-77 7.191091524428138E-4 0.002034321944410592 0.0 0.18214277874373902 4.5417420154282974E-4 78-79 7.380330775070983E-4 0.0020627078320070184 0.0 0.18469750862741743 4.6363616407497205E-4 80-81 7.380330775070983E-4 0.0020721697945391606 0.0 0.1854733895550531 4.825600891392566E-4 82-83 7.380330775070983E-4 0.0020910937196034454 0.0 0.1859654116067245 4.920220516713989E-4 84-85 7.380330775070983E-4 0.0021005556821355876 0.0 0.18623980852015665 4.920220516713989E-4 86-87 7.664189651035252E-4 0.002119479607199872 0.0 0.18629658029534948 4.920220516713989E-4 88 7.758809276356676E-4 0.002176251382392726 0.0 0.18630604225788164 4.920220516713989E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6220 0.0 44.818817 1 GTATCAA 10565 0.0 34.16105 1 TCAACGC 12395 0.0 28.314264 4 ATCAACG 12580 0.0 27.996809 3 CAACGCA 12835 0.0 27.375938 5 TATCAAC 12935 0.0 27.29258 2 AACGCAG 13225 0.0 26.788208 6 ACGCAGA 15640 0.0 22.651793 7 CGCAGAG 15840 0.0 22.313406 8 GTGGTAT 3245 0.0 21.604961 1 GTACATG 15415 0.0 20.77568 1 TACATGG 15480 0.0 20.152473 2 TGGTATC 3240 0.0 19.33363 2 ACATGGG 15705 0.0 19.256222 3 GCAGAGT 18625 0.0 19.043697 9 GAGTACT 10310 0.0 18.02606 12-13 CATGGGG 11690 0.0 17.530483 4 CAGAGTA 17960 0.0 17.254236 10-11 AGAGTAC 16485 0.0 17.061697 10-11 GTACTTT 11335 0.0 16.341415 14-15 >>END_MODULE