##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138699_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9187780 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.15634962961673 33.0 31.0 34.0 30.0 34.0 2 32.41202662667151 34.0 31.0 34.0 31.0 34.0 3 32.431249986394974 34.0 31.0 34.0 30.0 34.0 4 36.072000744467104 37.0 35.0 37.0 35.0 37.0 5 35.822948198585514 37.0 35.0 37.0 35.0 37.0 6 35.91698288378694 37.0 35.0 37.0 35.0 37.0 7 35.87453770116394 37.0 35.0 37.0 35.0 37.0 8 35.88752810798691 37.0 35.0 37.0 35.0 37.0 9 37.67053368713661 39.0 37.0 39.0 35.0 39.0 10-11 37.582184923888036 39.0 37.0 39.0 35.0 39.0 12-13 37.54093649390822 39.0 37.0 39.0 35.0 39.0 14-15 38.822191922314204 40.0 38.0 41.0 35.0 41.0 16-17 38.77728809353293 40.0 38.0 41.0 35.0 41.0 18-19 38.783505754382446 40.0 38.0 41.0 34.5 41.0 20-21 38.79920177080449 40.0 38.0 41.0 34.5 41.0 22-23 38.72304880356111 40.0 38.0 41.0 34.0 41.0 24-25 38.648373008845994 40.0 38.0 41.0 34.0 41.0 26-27 38.48793784563796 40.0 38.0 41.0 34.0 41.0 28-29 38.361467834123616 40.0 38.0 41.0 34.0 41.0 30-31 38.22798199841975 40.0 38.0 41.0 34.0 41.0 32-33 38.067613310546456 40.0 37.0 41.0 33.0 41.0 34-35 38.02066921634015 40.0 37.0 41.0 33.0 41.0 36-37 38.028637854953146 40.0 37.0 41.0 33.0 41.0 38-39 37.9872641448424 40.0 37.0 41.0 33.0 41.0 40-41 38.02654384821983 40.0 37.0 41.0 33.0 41.0 42-43 38.089835029600195 40.0 37.0 41.0 33.0 41.0 44-45 38.06589876180508 40.0 37.0 41.0 33.0 41.0 46-47 37.964329401950266 40.0 37.0 41.0 33.0 41.0 48-49 37.87352309209949 40.0 37.0 41.0 33.0 41.0 50-51 37.77026829022168 40.0 37.0 41.0 33.0 41.0 52-53 37.59673291190252 39.5 36.0 41.0 32.0 41.0 54-55 37.45727983107767 39.0 36.0 41.0 32.0 41.0 56-57 37.286726040597294 39.0 35.5 41.0 32.0 41.0 58-59 37.04832934911987 39.0 35.0 41.0 31.0 41.0 60-61 36.84710311925875 38.5 35.0 40.0 31.0 41.0 62-63 36.605496577700194 38.0 35.0 40.0 31.0 41.0 64-65 36.29077411847119 37.5 35.0 40.0 31.0 41.0 66-67 35.95387343822297 37.0 34.5 40.0 30.0 41.0 68-69 35.68831264206945 36.5 34.0 39.0 30.0 41.0 70-71 35.30131802739465 36.0 34.0 39.0 30.0 40.5 72-73 35.019664608248135 35.5 34.0 38.5 30.0 40.0 74-75 34.705246306727474 35.0 34.0 37.5 29.0 40.0 76-77 33.34152967742767 34.5 31.5 36.0 28.0 39.0 78-79 34.11625168651036 35.0 33.0 36.0 29.0 39.0 80-81 34.090905300779184 35.0 34.0 36.0 29.0 38.5 82-83 33.87445795996008 35.0 33.5 36.0 29.0 37.0 84-85 33.69680857749487 35.0 33.0 35.5 29.0 37.0 86-87 33.493291823416314 35.0 33.0 35.0 29.0 36.5 88-89 33.40521726649695 35.0 33.0 35.0 29.0 36.0 90-91 33.32368177698817 35.0 33.0 35.0 29.0 36.0 92-93 33.16614143157158 35.0 33.0 35.0 29.0 36.0 94-95 33.196429234478416 35.0 33.0 35.0 29.0 35.0 96-97 33.25212835020112 35.0 33.0 35.0 29.0 35.0 98-99 33.34542514638605 35.0 33.0 35.0 29.5 35.0 100 32.18460582640488 34.0 31.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 2.0 19 16.0 20 47.0 21 307.0 22 1325.0 23 4468.0 24 11802.0 25 25600.0 26 46562.0 27 74454.0 28 108019.0 29 144010.0 30 184986.0 31 231296.0 32 290236.0 33 370462.0 34 501468.0 35 703539.0 36 1112776.0 37 1900037.0 38 2208971.0 39 1214980.0 40 52415.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.35713306152302 19.341396942460527 13.073811083852682 24.227658912163765 2 16.016578542368233 20.801053137972396 39.21343349536014 23.968934824299232 3 19.25321459590891 25.01993952837356 29.600491087074353 26.126354788643173 4 13.186809000650864 16.71632320321122 37.25359118307143 32.843276613066486 5 13.856285196206267 37.61909841115047 34.63455807605319 13.890058316590078 6 31.914564780610768 36.280287512326154 17.824153386345778 13.980994320717299 7 28.271965589075926 31.900981521107386 21.786253044805164 18.040799845011527 8 26.180633406546523 35.39126970824291 20.300268399983455 18.12782848522712 9 26.51168182085335 15.870678226949275 20.412362942952488 37.20527700924489 10-11 25.52803832917201 26.02935638424081 27.74080354557902 20.701801741008165 12-13 25.883564909042228 23.483583629560133 28.142407632746973 22.490443828650662 14-15 22.94382320865323 24.865598653864154 25.77055066621099 26.420027471271624 16-17 22.68182421008975 27.993043142086133 26.41200635388234 22.913126293941776 18-19 22.666607167346193 27.185059938309365 28.153710689633403 21.99462220471104 20-21 23.58715917574684 26.326629639558767 28.011766866148065 22.074444318546327 22-23 23.281967563594627 26.17773229058219 27.823479056368562 22.71682108945462 24-25 22.913918252039057 26.346688915838996 28.011413625066638 22.727979207055306 26-27 22.862009308500355 26.523627271777645 27.93913300825073 22.67523041147127 28-29 22.826227006404142 26.626510423763456 27.91638097833492 22.630881591497477 30-31 23.1222889555312 26.502561402294184 27.70592308378575 22.669226558388868 32-33 22.834255830349992 26.731655360773228 27.668760823881332 22.765327984995448 34-35 22.977178103824066 26.735049145209857 27.726387975534067 22.561384775432014 36-37 23.066890697466256 26.59267609149459 27.622174402135506 22.718258808903652 38-39 22.759534837811632 26.84196538875231 27.781024236399176 22.617475537036885 40-41 23.12897735975389 26.672916895632987 27.563949131480868 22.63415661313225 42-43 22.88583120419944 26.75250902144039 27.412970052174444 22.948689722185716 44-45 22.939438507189877 26.884952919661213 27.28957974849397 22.886028824654936 46-47 23.078672833014657 26.737425379642016 27.087677568565127 23.0962242187782 48-49 22.97653764236598 26.94354578418071 26.9717697022796 23.108146871173705 50-51 22.958167408096024 26.989712705043058 27.00003862503948 23.052081261821446 52-53 23.178025120971583 26.972891179240506 26.74412677489233 23.104956924895582 54-55 23.126618005604275 26.77207545563478 26.923179014354165 23.178127524406776 56-57 23.086554803200656 26.949984069782097 26.848618963120852 23.114842163896398 58-59 23.030072337786358 27.055186472557313 26.839284053073932 23.0754571365824 60-61 23.136068197149317 26.945965517118676 26.905571379117 23.012394906615004 62-63 23.148066579559277 27.02107211584403 26.79316649941233 23.03769480518436 64-65 23.03535242892131 27.012613086473074 26.872521982619812 23.079512501985803 66-67 23.24688428291367 26.999152040706274 26.608657506540002 23.145306169840058 68-69 23.085530891443803 26.941915277688643 26.81190605036295 23.160647780504608 70-71 23.08949959972737 26.688846246020642 26.88270397332196 23.338950180930027 72-73 23.178335992185037 26.807687535600692 26.770527292674224 23.243449179540047 74-75 22.878492115821615 26.99243542494792 26.796882115266214 23.332190343964253 76-77 23.089635264252788 26.80463296925296 26.718175795496464 23.387555970997788 78-79 23.02148615868325 26.84302491848231 26.708547832555325 23.42694109027911 80-81 23.14557407675567 26.872005327455824 26.60189348293254 23.38052711285597 82-83 23.149257292443718 26.81688678530527 26.76713081040602 23.266725111844995 84-85 23.260981357988985 26.778255442444767 26.676100816527182 23.28466238303907 86-87 22.980117838690305 26.856730638251335 26.813409283202326 23.34974223985603 88-89 23.11123752570302 26.71560754485811 26.829099524859718 23.34405540457915 90-91 23.14736516349887 26.737141652748054 26.84680048062994 23.26869270312314 92-93 23.268550173397383 26.75451289253407 26.712667174739092 23.264269759329455 94-95 23.116607723385517 26.740905419283358 26.876766139542795 23.265720717788337 96-97 23.001650347606866 26.786342145298093 27.041340716250005 23.170666790845036 98-99 24.220362331292836 28.826052620953163 27.083630299257138 19.86995474849686 100 31.526108010114022 40.40544994817215 28.06844204171383 0.0 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1997.0 1 1855.5 2 2615.0 3 3736.5 4 4864.5 5 7569.5 6 10173.5 7 12664.0 8 14815.5 9 15146.5 10 13399.5 11 11319.0 12 11791.5 13 15136.5 14 23597.0 15 34970.5 16 43947.0 17 48683.0 18 49134.5 19 46581.5 20 42584.5 21 38257.5 22 36002.5 23 38075.5 24 44071.0 25 54169.5 26 68997.5 27 84883.0 28 99248.5 29 116446.5 30 132869.5 31 146763.5 32 164276.5 33 184442.0 34 204716.0 35 224933.0 36 247562.0 37 266085.0 38 278584.5 39 289688.0 40 303109.5 41 315853.5 42 325622.5 43 339842.5 44 355307.5 45 368037.5 46 377507.0 47 387692.0 48 398862.0 49 407300.0 50 411480.5 51 410729.5 52 404098.0 53 394070.5 54 382964.5 55 367147.5 56 345078.0 57 319056.5 58 290806.5 59 259127.5 60 227196.5 61 193009.0 62 158350.5 63 126869.0 64 99779.5 65 79667.0 66 62756.0 67 46922.0 68 34261.0 69 25519.5 70 17962.0 71 11935.5 72 8108.0 73 5528.0 74 3604.0 75 2364.5 76 1604.5 77 1049.0 78 695.0 79 471.0 80 326.5 81 215.5 82 149.5 83 107.5 84 68.5 85 47.0 86 37.0 87 29.5 88 21.5 89 13.5 90 9.0 91 6.0 92 3.5 93 2.5 94 3.0 95 3.0 96 3.0 97 2.5 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 1.2516625343662996E-4 18-19 0.0 20-21 9.142949691898921E-4 22-23 5.660467728802636E-4 24-25 7.077120415516249E-4 26-27 0.0023309375869676628 28-29 0.0020274830781466103 30-31 0.002374999542744341 32-33 0.0013306779645424155 34-35 0.0011106760047026683 36-37 0.006781981745958692 38-39 0.003197069007479133 40-41 8.449736433004603E-4 42-43 2.8445334467354E-5 44-45 6.96317916893018E-4 46-47 0.0033585576953856977 48-49 2.3628171963945298E-4 50-51 0.0013393023167658049 52-53 0.002962790077555565 54-55 0.0016574267672710445 56-57 1.1765744764831866E-4 58-59 0.0020010312524699246 60-61 3.7490092925231854E-4 62-63 0.0013963584772665762 64-65 0.0037140780237873016 66-67 0.004299382870149127 68-69 0.00200968642058905 70-71 0.0017812239551234902 72-73 0.0015862509833894003 74-75 0.024812240294938375 76-77 0.00901031738098027 78-79 0.002333291876593921 80-81 0.005611923559601409 82-83 0.011344740571580147 84-85 0.005353618589334338 86-87 0.007658352749713138 88-89 0.009448962289191502 90-91 4.2981427406836565E-4 92-93 1.6244453026930462E-5 94-95 4.732932650451418E-4 96-97 0.0036226872153915677 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 239.0 20-21 734.0 22-23 1462.0 24-25 3426.0 26-27 5468.0 28-29 12584.0 30-31 25595.0 32-33 33971.0 34-35 48593.0 36-37 72929.0 38-39 85117.0 40-41 86445.0 42-43 95369.0 44-45 111908.0 46-47 112648.0 48-49 104753.0 50-51 94682.0 52-53 92009.0 54-55 99375.0 56-57 103966.0 58-59 102366.0 60-61 100031.0 62-63 95907.0 64-65 100842.0 66-67 106437.0 68-69 109244.0 70-71 106731.0 72-73 100310.0 74-75 102068.0 76-77 102434.0 78-79 108946.0 80-81 109316.0 82-83 104117.0 84-85 104646.0 86-87 111049.0 88-89 118904.0 90-91 125434.0 92-93 130990.0 94-95 149854.0 96-97 330026.0 98-99 1887719.0 100-101 3689136.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.92474063913788 #Duplication Level Percentage of deduplicated Percentage of total 1 89.69526568192346 75.27651908913991 2 6.911851620317513 11.601507091427045 3 1.8222861163871382 4.588046690642772 4 0.7041565158817987 2.3638461185895574 5 0.3248346885186982 1.363083349226344 6 0.17418155135923755 0.8770884913168011 7 0.09722744835328406 0.5711851870238177 8 0.07155433352931762 0.48041431064434786 9 0.042858381495697234 0.3237190696115655 >10 0.15046745180932122 1.9948992531413166 >50 0.0038002798438495104 0.2199912780283609 >100 0.001354803705264807 0.1904499845742496 >500 9.207252730860525E-5 0.05872643449539973 >1k 6.90543481105887E-5 0.0905236521385409 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 6.530413222780693E-5 0.0 0.0 0.0 3 0.0 6.530413222780693E-5 0.0 0.0 0.0 4 0.0 2.0679641872138862E-4 0.0 0.0 1.0884022037967823E-5 5 1.0884022037967823E-5 2.2856446279732428E-4 0.0 0.0 1.0884022037967823E-5 6 1.0884022037967823E-5 2.2856446279732428E-4 0.0 0.0 2.1768044075935646E-5 7 1.0884022037967823E-5 2.394484848352921E-4 0.0 0.0 3.265206611390347E-5 8 1.0884022037967823E-5 2.7210055094919555E-4 0.0 0.0 3.265206611390347E-5 9 1.0884022037967823E-5 4.027088154048094E-4 0.0 0.0 4.353608815187129E-5 10-11 3.265206611390347E-5 4.027088154048094E-4 0.0 0.0 4.353608815187129E-5 12-13 3.265206611390347E-5 4.027088154048094E-4 0.0 0.0 4.89780991708552E-5 14-15 3.265206611390347E-5 6.09505234126198E-4 0.0 0.0 7.074614324679084E-5 16-17 4.353608815187129E-5 6.203892561641659E-4 0.0 0.0 9.79561983417104E-5 18-19 5.442011018983911E-5 7.074614324679084E-4 0.0 0.0 1.0884022037967822E-4 20-21 6.530413222780693E-5 8.163016528475867E-4 0.0 1.0884022037967823E-5 1.0884022037967822E-4 22-23 7.618815426577475E-5 9.196998622082811E-4 0.0 3.8094077132887376E-5 1.1428223139866214E-4 24-25 1.1428223139866213E-4 0.001044866115644911 0.0 9.251418732272649E-5 1.1972424241764605E-4 26-27 1.523763085315495E-4 0.0010775181817588143 0.0 1.959123966834208E-4 1.1972424241764605E-4 28-29 1.523763085315495E-4 0.0010775181817588143 0.0 8.924898071133615E-4 1.1972424241764605E-4 30-31 1.523763085315495E-4 0.0012625465564042673 0.0 0.002623049311150245 1.2516625343662996E-4 32-33 1.523763085315495E-4 0.0012788725894612191 0.0 0.005692343525857171 1.3060826445561387E-4 34-35 1.523763085315495E-4 0.0015455311293914309 0.0 0.010094930440215154 1.3060826445561387E-4 36-37 1.523763085315495E-4 0.0018393997244165621 0.0 0.016173656748420185 1.3060826445561387E-4 38-39 1.523763085315495E-4 0.001893819834606401 0.0 0.025952950549534275 1.3060826445561387E-4 40-41 1.7414435260748517E-4 0.0020135440770240472 0.0 0.0367009223120275 1.3060826445561387E-4 42-43 1.8502837464545298E-4 0.00207340619823287 0.0 0.04731828581006511 1.3060826445561387E-4 44-45 1.8502837464545298E-4 0.0023455067491820656 0.0 0.05918731184246902 1.3060826445561387E-4 46-47 2.0679641872138862E-4 0.002568629200960406 0.0 0.07141551060212586 1.3605027547459778E-4 48-49 2.0679641872138862E-4 0.002579513222998374 0.0 0.08355119517446 1.4149228649358169E-4 50-51 2.0679641872138862E-4 0.0028679398070045213 0.0 0.09607326252914197 1.4149228649358169E-4 52-53 2.0679641872138862E-4 0.002895149862099441 0.0 0.10817629503536219 1.5781831955053344E-4 54-55 2.1223842974037253E-4 0.002906033884137409 0.0 0.11997457492451931 1.7414435260748517E-4 56-57 2.1768044075935644E-4 0.002927801928213344 0.0 0.13068989462089864 1.7414435260748517E-4 58-59 2.2312245177834035E-4 0.002927801928213344 0.0 0.1411167877332718 1.7414435260748517E-4 60-61 2.2856446279732428E-4 0.002938685950251312 0.0 0.1513314424159046 1.7414435260748517E-4 62-63 2.394484848352921E-4 0.0029767800273841996 0.0 0.16101822202969596 1.7414435260748517E-4 64-65 2.394484848352921E-4 0.0032869746554662826 0.0 0.16969278759395634 1.7414435260748517E-4 66-67 2.503325068732599E-4 0.0033359527546371376 0.0 0.17878094599565947 1.7414435260748517E-4 68-69 2.6665853993021167E-4 0.003417582919921896 0.0 0.1877657061880019 1.7414435260748517E-4 70-71 2.7210055094919555E-4 0.003493771074187671 0.0 0.1951069790526112 2.013544077024047E-4 72-73 2.7210055094919555E-4 0.0035046550962256388 0.0 0.20098979296413277 2.2856446279732428E-4 74-75 2.7210055094919555E-4 0.0035590752064154777 0.0 0.2051801414487504 2.2856446279732428E-4 76-77 2.7210055094919555E-4 0.003722335536984995 0.0 0.20945212009865277 2.2856446279732428E-4 78-79 2.7210055094919555E-4 0.0037767556471748343 0.0 0.21222754571833458 2.2856446279732428E-4 80-81 2.938685950251312E-4 0.003782197658193818 0.0 0.21320166569073268 2.340064738163082E-4 82-83 2.938685950251312E-4 0.003793081680231786 0.0 0.21380028690282094 2.394484848352921E-4 84-85 2.9931060604411507E-4 0.0038202917353267057 0.0 0.21401252533256132 2.394484848352921E-4 86-87 3.04752617063099E-4 0.0038964798895924804 0.0 0.21412136555294098 2.4489049585427604E-4 88 3.04752617063099E-4 0.004005320109972159 0.0 0.21413224957497895 2.503325068732599E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11295 0.0 50.39153 1 GTATCAA 20525 0.0 36.141136 1 TCAACGC 25015 0.0 29.068161 4 ATCAACG 25560 0.0 28.464287 3 TATCAAC 26020 0.0 28.164484 2 CAACGCA 25900 0.0 28.074903 5 AACGCAG 26635 0.0 27.453026 6 ACGCAGA 31545 0.0 23.15413 7 CGCAGAG 32510 0.0 22.491892 8 GTACATG 35395 0.0 22.464508 1 TACATGG 34950 0.0 22.412716 2 ACATGGG 35865 0.0 21.36414 3 GCAGAGT 37255 0.0 19.474205 9 GTGGTAT 6320 0.0 19.197107 1 TGGTATC 5715 0.0 19.092165 2 CATGGGG 26035 0.0 19.03135 4 GAGTACT 19585 0.0 18.189514 12-13 CAGAGTA 36195 0.0 17.693623 10-11 GAGTACA 25170 0.0 17.27526 1 AGAGTAC 33580 0.0 16.925493 10-11 >>END_MODULE