##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138697_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7256646 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.17915769902514 33.0 31.0 34.0 30.0 34.0 2 32.435571199146274 34.0 31.0 34.0 31.0 34.0 3 32.45739767380137 34.0 31.0 34.0 31.0 34.0 4 36.08665821648183 37.0 35.0 37.0 35.0 37.0 5 35.8385033526508 37.0 35.0 37.0 35.0 37.0 6 35.93452402115247 37.0 35.0 37.0 35.0 37.0 7 35.89461646606435 37.0 35.0 37.0 35.0 37.0 8 35.90709702526484 37.0 35.0 37.0 35.0 37.0 9 37.697346956155776 39.0 37.0 39.0 35.0 39.0 10-11 37.60902550572261 39.0 37.0 39.0 35.0 39.0 12-13 37.56936303631181 39.0 37.0 39.0 35.0 39.0 14-15 38.8668796851879 40.0 38.0 41.0 35.0 41.0 16-17 38.82048056361024 40.0 38.0 41.0 35.0 41.0 18-19 38.81996758557604 40.0 38.0 41.0 35.0 41.0 20-21 38.83250040069625 40.0 38.0 41.0 35.0 41.0 22-23 38.75863304024987 40.0 38.0 41.0 34.0 41.0 24-25 38.682710184967966 40.0 38.0 41.0 34.0 41.0 26-27 38.525837499421925 40.0 38.0 41.0 34.0 41.0 28-29 38.39783159213002 40.0 38.0 41.0 34.0 41.0 30-31 38.26838992647583 40.0 38.0 41.0 34.0 41.0 32-33 38.11518869567614 40.0 37.5 41.0 33.5 41.0 34-35 38.07732342321127 40.0 37.5 41.0 33.0 41.0 36-37 38.087491587590726 40.0 37.5 41.0 33.0 41.0 38-39 38.04943611968611 40.0 37.0 41.0 33.0 41.0 40-41 38.088210952520356 40.0 37.5 41.0 33.0 41.0 42-43 38.14944627230413 40.0 38.0 41.0 33.0 41.0 44-45 38.126990171765314 40.0 37.0 41.0 33.0 41.0 46-47 38.026727871835774 40.0 37.0 41.0 33.0 41.0 48-49 37.939896190310115 40.0 37.0 41.0 33.0 41.0 50-51 37.835097832861265 40.0 37.0 41.0 33.0 41.0 52-53 37.66156929552448 40.0 36.5 41.0 32.5 41.0 54-55 37.524876721720005 39.0 36.0 41.0 32.0 41.0 56-57 37.351406487111106 39.0 36.0 41.0 32.0 41.0 58-59 37.11263604247078 39.0 35.0 41.0 31.0 41.0 60-61 36.91044935763644 38.5 35.0 40.0 31.0 41.0 62-63 36.6643460694138 38.0 35.0 40.0 31.0 41.0 64-65 36.34670076301862 37.5 35.0 40.0 31.0 41.0 66-67 36.00774030580742 37.0 34.5 40.0 30.0 41.0 68-69 35.73745498938679 36.5 34.0 39.0 30.0 41.0 70-71 35.34329227239247 36.0 34.0 39.0 30.0 40.5 72-73 35.054378553647226 35.5 34.0 38.5 30.0 40.0 74-75 34.73365537809508 35.0 34.0 37.5 29.0 40.0 76-77 33.373228142551355 34.5 32.0 36.0 28.0 39.0 78-79 34.14101914533174 35.0 33.5 36.5 29.0 39.0 80-81 34.10651751512224 35.0 34.0 36.0 29.0 38.5 82-83 33.89135910511848 35.0 33.5 36.0 29.0 37.0 84-85 33.7099661943008 35.0 33.0 35.5 29.0 37.0 86-87 33.504090792265785 35.0 33.0 35.0 29.0 36.5 88-89 33.41381273409642 35.0 33.0 35.0 29.0 36.0 90-91 33.329707993493464 35.0 33.0 35.0 29.0 36.0 92-93 33.1693846083544 35.0 33.0 35.0 29.0 36.0 94-95 33.202220479105165 35.0 33.0 35.0 29.0 35.0 96-97 33.25872570504906 35.0 33.0 35.0 29.0 35.0 98-99 33.351352415077905 35.0 33.0 35.0 29.5 35.0 100 32.15078800503133 34.0 31.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 2.0 19 3.0 20 50.0 21 236.0 22 1000.0 23 3407.0 24 9041.0 25 19417.0 26 35765.0 27 57586.0 28 83289.0 29 111467.0 30 143895.0 31 179657.0 32 225262.0 33 287354.0 34 388074.0 35 543451.0 36 861988.0 37 1497294.0 38 1778280.0 39 987340.0 40 42787.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.406196195873406 19.121464654607653 12.921575614960409 24.550763534558527 2 16.02094135500064 20.67518520264045 39.203827773877904 24.100045668481005 3 19.464749968511626 24.603129324484065 29.3706348635444 26.561485843459913 4 13.254153502871713 16.600479064294994 36.99000888289163 33.15535854994167 5 14.020389033721639 37.37693694855723 34.56865609814782 14.034017919573314 6 32.29409289084792 35.95712123755245 17.73086354219291 14.017922329406726 7 28.500067386503353 31.57307108545739 21.660185711139828 18.266675816899433 8 26.10779139563925 35.55051465925167 20.26688362640261 18.074810318706465 9 26.400970916867106 15.825672080462516 20.22667221192821 37.54668479074217 10-11 25.645980250380134 25.97586405620448 27.636335023094695 20.741820670320696 12-13 25.903420119983807 23.340617690321398 28.069978885562286 22.685983304132513 14-15 22.945400671329427 24.813970531289524 25.535736482115844 26.704892315265205 16-17 22.783332735030022 27.892480140406743 26.300846336209855 23.023340788353384 18-19 22.7974742050253 27.215004011495118 27.82361162443366 22.16391015904593 20-21 23.57744674708193 26.371373535452157 27.726741996687704 22.324437720778207 22-23 23.32291728041441 26.216836517585833 27.624392238989664 22.83585396301009 24-25 23.0108625107594 26.340396166373775 27.77167167255481 22.877069650312016 26-27 22.918374957008314 26.511369801315666 27.706979974355306 22.86327526732072 28-29 22.887031341438345 26.663886808672192 27.67552419218226 22.7735576577072 30-31 23.21813311332152 26.524413804506253 27.492859316261125 22.7645937659111 32-33 22.91823980128636 26.705833746499643 27.504049561375805 22.87187689083819 34-35 23.07167507782582 26.718825065966676 27.47179512419864 22.737704732008865 36-37 23.13662166329103 26.60724590352721 27.43487623616384 22.821256197017924 38-39 22.8642539891104 26.784797301642744 27.578774762280272 22.77217394696659 40-41 23.20478603350843 26.605800468557632 27.402185722073973 22.787227775859968 42-43 23.0212798039281 26.690391459074732 27.26895896769908 23.01936976929809 44-45 23.064328517130225 26.81062906147284 27.128347553994097 22.996694867402834 46-47 23.129931155242613 26.75405209130438 26.948685144692035 23.167331608760968 48-49 23.0388776087807 26.883361486208386 26.934084555611133 23.14367634939978 50-51 22.994662412353264 27.01380682265816 26.89249525783442 23.099035507154156 52-53 23.24115203849006 26.897514890939483 26.69584540164065 23.165487668929803 54-55 23.14883561261067 26.764140816732585 26.788819779010126 23.29820379164662 56-57 23.164266896276466 26.944791218210025 26.77442838579941 23.1165134997141 58-59 23.09666099208233 27.004855670272796 26.808367190113735 23.090116147531134 60-61 23.18538440881462 26.898896210316988 26.826092838157606 23.089626542710786 62-63 23.156001967531807 26.959853277223207 26.759974828126566 23.12416992711842 64-65 23.136847097863843 26.95103833047433 26.737943434704004 23.17417113695782 66-67 23.192205403749302 27.003678812367504 26.53724195526243 23.266873828620763 68-69 23.143213730139646 26.969705980556164 26.694997837779972 23.192082451524215 70-71 23.133222798652927 26.693056239655693 26.786298861095048 23.387422100596332 72-73 23.20720995195977 26.734523693759808 26.71939525418227 23.338871100098153 74-75 22.923510730036973 26.982503674111374 26.748417640133248 23.345567955718398 76-77 23.128472165073255 26.856827247092102 26.6604806377204 23.354219950114235 78-79 23.087763159143694 26.84579219180453 26.649442777649192 23.417001871402586 80-81 23.122215251385402 26.8593862513486 26.63637922023933 23.382019277026668 82-83 23.133485260211035 26.78321488649842 26.74269979674647 23.340600056544073 84-85 23.262891498322624 26.76978405641364 26.662277417802215 23.30504702746152 86-87 23.028345325613873 26.81646769330716 26.801663927711 23.353523053367965 88-89 23.113303055046288 26.767350321151362 26.781807295742365 23.337539328059982 90-91 23.201348348180854 26.6941890993689 26.827837941290355 23.276624611159892 92-93 23.231430186406744 26.687490808649848 26.786254176672742 23.294824828270663 94-95 23.085458036463727 26.738936644481022 26.865362397926557 23.310242921128697 96-97 23.055259083860342 26.860346386944272 26.9572694103637 23.12712511883169 98-99 24.222100819845917 28.83644369545351 27.079927794868286 19.861527689832283 100 31.51461317285372 40.39157015800554 28.093816669140736 0.0 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1190.0 1 1071.5 2 1500.5 3 2237.0 4 3156.5 5 5152.5 6 6906.0 7 8279.0 8 9403.0 9 9478.5 10 8528.5 11 7470.5 12 7813.5 13 10209.5 14 16085.5 15 23510.5 16 29196.5 17 32556.0 18 33353.5 19 31858.0 20 29197.5 21 26470.0 22 24998.5 23 26398.5 24 30653.0 25 38065.5 26 49221.5 27 60974.5 28 71678.5 29 84170.0 30 96971.0 31 109434.5 32 124390.5 33 140749.0 34 157140.0 35 173322.5 36 191668.0 37 207869.0 38 219288.5 39 229940.5 40 243198.5 41 255597.5 42 265397.5 43 277792.0 44 290112.5 45 299415.5 46 307699.0 47 317114.0 48 324664.0 49 329601.0 50 332885.5 51 333267.5 52 328786.0 53 322209.0 54 313726.0 55 300163.5 56 282684.5 57 261636.5 58 237661.5 59 210245.5 60 181330.0 61 151637.0 62 122977.5 63 97403.5 64 74637.5 65 56564.0 66 42389.5 67 32315.0 68 24620.0 69 17957.5 70 12906.0 71 8865.5 72 5926.0 73 3860.5 74 2527.5 75 1738.5 76 1213.5 77 823.5 78 540.0 79 339.5 80 223.0 81 149.0 82 103.0 83 69.5 84 49.0 85 35.5 86 26.5 87 20.0 88 13.0 89 8.0 90 6.0 91 5.0 92 3.0 93 2.0 94 1.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 1.9981682997902885E-4 18-19 0.0 20-21 7.372856806993492E-4 22-23 5.926399221133319E-4 24-25 7.788612373237749E-4 26-27 0.002392583515127161 28-29 0.0023943098501907237 30-31 0.002875406825137525 32-33 0.0015045013014976234 34-35 0.0011068871493047357 36-37 0.006731210170025046 38-39 0.002819779018370613 40-41 7.493554472645743E-4 42-43 1.297380329638394E-4 44-45 5.905242295007533E-4 46-47 0.003205861437497927 48-49 2.9185510965333225E-4 50-51 0.0015680716967831122 52-53 0.003210364866012089 54-55 0.0019841988018384532 56-57 1.5698001840590717E-4 58-59 0.001908545216974951 60-61 4.350780203660021E-4 62-63 0.0016156478266354396 64-65 0.003866941516971412 66-67 0.004547740978764311 68-69 0.0021069519388970345 70-71 0.0020691415726493277 72-73 0.0015827770076192787 74-75 0.024213296176134484 76-77 0.009029096082262619 78-79 0.0022908275902163958 80-81 0.0055716204460114615 82-83 0.011309418824880759 84-85 0.004962039916599486 86-87 0.007294499335578925 88-89 0.009317605452469048 90-91 3.825714925442857E-4 92-93 5.134829848683754E-5 94-95 5.038111740910065E-4 96-97 0.003564013571763681 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 207.0 20-21 555.0 22-23 1123.0 24-25 2408.0 26-27 4133.0 28-29 9604.0 30-31 20812.0 32-33 26956.0 34-35 38565.0 36-37 59697.0 38-39 69481.0 40-41 68372.0 42-43 75183.0 44-45 87935.0 46-47 88831.0 48-49 83225.0 50-51 75920.0 52-53 73289.0 54-55 79262.0 56-57 83089.0 58-59 81871.0 60-61 79420.0 62-63 76072.0 64-65 79739.0 66-67 84348.0 68-69 85890.0 70-71 83190.0 72-73 78538.0 74-75 79556.0 76-77 79934.0 78-79 84706.0 80-81 84617.0 82-83 80450.0 84-85 80972.0 86-87 85782.0 88-89 92230.0 90-91 97345.0 92-93 102334.0 94-95 117953.0 96-97 261684.0 98-99 1494445.0 100-101 2916923.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.81699950434624 #Duplication Level Percentage of deduplicated Percentage of total 1 90.70006310659873 77.83607270663157 2 6.481369255549255 11.124233243819107 3 1.5460583931758034 3.9803427708257484 4 0.5693498906553497 1.9543959713667896 5 0.2655337623401929 1.1393655375567764 6 0.13299570553340892 0.684797543750444 7 0.07804833682340326 0.4688511857742331 8 0.0564157664961525 0.3873145444350106 9 0.0369505151866594 0.2853884109113 >10 0.12860268803687236 1.7615127786787779 >50 0.0034305501986622716 0.20052656850215755 >100 0.0011285562293807546 0.13901904417614022 >500 2.673662302702609E-5 0.012573623072518886 >1k 2.673655307055546E-5 0.02560607049949824 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 5.5121884132145896E-5 0.0 0.0 0.0 3 0.0 5.5121884132145896E-5 0.0 0.0 0.0 4 0.0 9.646329723125532E-5 0.0 0.0 0.0 5 2.7560942066072948E-5 9.646329723125532E-5 0.0 0.0 0.0 6 5.5121884132145896E-5 9.646329723125532E-5 0.0 0.0 2.7560942066072948E-5 7 5.5121884132145896E-5 9.646329723125532E-5 0.0 0.0 2.7560942066072948E-5 8 6.890235516518238E-5 1.1024376826429179E-4 0.0 0.0 4.134141309910942E-5 9 6.890235516518238E-5 1.7914612342947417E-4 0.0 6.890235516518238E-5 8.268282619821884E-5 10-11 8.268282619821884E-5 1.7914612342947417E-4 0.0 8.957306171473707E-5 8.268282619821884E-5 12-13 8.268282619821884E-5 1.7914612342947417E-4 0.0 9.646329723125532E-5 8.268282619821884E-5 14-15 8.957306171473707E-5 2.3426800756162005E-4 0.0 1.1024376826429179E-4 1.4469494584688297E-4 16-17 1.3780471033036473E-4 2.4804847859465653E-4 0.0 1.1713400378081002E-4 1.5158518136340122E-4 18-19 1.5158518136340122E-4 2.6871918514421127E-4 0.0 1.3780471033036473E-4 1.5847541687991946E-4 20-21 1.5158518136340122E-4 2.756094206607295E-4 0.0 1.653656523964377E-4 1.6536565239643768E-4 22-23 1.5158518136340122E-4 3.0317036272680244E-4 0.0 1.7914612342947417E-4 2.0670706549554712E-4 24-25 1.5158518136340122E-4 3.6518248237546653E-4 0.0 2.7560942066072946E-4 2.61828949627693E-4 26-27 1.5158518136340122E-4 3.8585318892502126E-4 0.0 3.514020113424301E-4 2.61828949627693E-4 28-29 1.5158518136340122E-4 3.8585318892502126E-4 0.0 0.0010886572116098816 2.61828949627693E-4 30-31 1.5158518136340122E-4 4.5475554409020366E-4 0.0 0.0029214598590037327 2.61828949627693E-4 32-33 1.5158518136340122E-4 4.616457796067219E-4 0.0 0.005911822073172647 2.756094206607295E-4 34-35 1.5158518136340122E-4 5.581090768379773E-4 0.0 0.01036291421684343 3.0317036272680244E-4 36-37 1.5158518136340122E-4 6.476821385527143E-4 0.0 0.017218698555779073 3.100605982433207E-4 38-39 1.5158518136340122E-4 6.752430806187872E-4 0.0 0.0270510646378506 3.3073130479287536E-4 40-41 1.5158518136340122E-4 7.303649647509332E-4 0.0 0.0372899546153967 3.3073130479287536E-4 42-43 1.5158518136340122E-4 7.510356713004878E-4 0.0 0.047742441893954865 3.3073130479287536E-4 44-45 1.653656523964377E-4 8.543892040482615E-4 0.0 0.059710780986147044 3.376215403093936E-4 46-47 1.7914612342947417E-4 9.370720302464803E-4 0.0 0.07287113082269688 3.4451177582591185E-4 48-49 1.7914612342947417E-4 9.370720302464803E-4 0.0 0.0857627614741025 3.5829224685894834E-4 50-51 1.7914612342947417E-4 0.001047315798510772 0.0 0.0987646358937724 3.5829224685894834E-4 52-53 1.7914612342947417E-4 0.0010610962695438086 0.0 0.11071919451493155 3.720727178919848E-4 54-55 1.7914612342947417E-4 0.001074876740576845 0.0 0.12261863125195856 3.8585318892502126E-4 56-57 1.7914612342947417E-4 0.001102437682642918 0.0 0.13371880066906944 3.9963365995805775E-4 58-59 1.7914612342947417E-4 0.0011231083891924726 0.0 0.1441643977121111 4.1341413099109424E-4 60-61 2.0670706549554712E-4 0.0011299986247089908 0.0 0.1536178008407741 4.203043665076125E-4 62-63 2.0670706549554712E-4 0.0011437790957420273 0.0 0.16270602148706165 4.5475554409020366E-4 64-65 2.0670706549554712E-4 0.0011989009798741733 0.0 0.17214564414469163 4.5475554409020366E-4 66-67 2.4804847859465653E-4 0.0012057912153906915 0.0 0.18149569374060687 4.616457796067219E-4 68-69 2.4804847859465653E-4 0.001219571686423728 0.0 0.1906459265065431 4.6853601512324015E-4 70-71 2.4804847859465653E-4 0.0012333521574567645 0.0 0.19821829533919666 5.305481347719043E-4 72-73 2.4804847859465653E-4 0.0012402423929732827 0.0 0.2037511544589608 6.063407254536049E-4 74-75 2.61828949627693E-4 0.0012609130995228375 0.0 0.20788529576887171 6.063407254536049E-4 76-77 2.756094206607295E-4 0.0012953642771054287 0.0 0.21176449836467148 6.063407254536049E-4 78-79 2.8938989169376595E-4 0.0013160349836549832 0.0 0.2145963851619605 6.063407254536049E-4 80-81 2.8938989169376595E-4 0.0013298154546880197 0.0 0.2153887622463601 6.270114320031596E-4 82-83 2.962801272102842E-4 0.001336705690204538 0.0 0.21586418849699984 6.545723740692326E-4 84-85 3.0317036272680244E-4 0.001336705690204538 0.0 0.2160984565045615 6.614626095857507E-4 86-87 3.0317036272680244E-4 0.0013573763967540927 0.0 0.2162362612148918 6.752430806187872E-4 88 3.0317036272680244E-4 0.001391827574336684 0.0 0.21624315145040834 6.752430806187872E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8355 0.0 47.48925 1 GTATCAA 14685 0.0 33.30302 1 TCAACGC 17490 0.0 27.311152 4 ATCAACG 18000 0.0 26.582506 3 CAACGCA 18305 0.0 26.095165 5 TATCAAC 18680 0.0 25.89775 2 AACGCAG 18720 0.0 25.668682 6 GTACATG 25540 0.0 23.653198 1 TACATGG 25495 0.0 23.104965 2 ACATGGG 25865 0.0 22.41295 3 ACGCAGA 22260 0.0 21.586601 7 TAGCGCG 380 4.6367404E-6 21.379637 94 CGCAGAG 22835 0.0 21.096445 8 CATGGGG 19040 0.0 20.15566 4 GTGGTAT 4800 0.0 19.140759 1 TGGTATC 4675 0.0 18.43513 2 GCAGAGT 26990 0.0 17.667988 9 GAGTACT 13545 0.0 17.272623 12-13 CAGAGTA 25675 0.0 16.72827 10-11 ATGGGGG 12120 0.0 16.636847 5 >>END_MODULE