##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138696_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7156639 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.1931811846315 33.0 31.0 34.0 30.0 34.0 2 32.449218830235814 34.0 31.0 34.0 31.0 34.0 3 32.472706811116225 34.0 31.0 34.0 31.0 34.0 4 36.096905265167074 37.0 35.0 37.0 35.0 37.0 5 35.848939565066786 37.0 35.0 37.0 35.0 37.0 6 35.94397621565095 37.0 35.0 37.0 35.0 37.0 7 35.904065022701296 37.0 35.0 37.0 35.0 37.0 8 35.91581062004106 37.0 35.0 37.0 35.0 37.0 9 37.70929300751372 39.0 37.0 39.0 35.0 39.0 10-11 37.621068493185135 39.0 37.0 39.0 35.0 39.0 12-13 37.5835867227619 39.0 37.0 39.0 35.0 39.0 14-15 38.88792776888704 40.0 38.0 41.0 35.0 41.0 16-17 38.84593473277051 40.0 38.0 41.0 35.0 41.0 18-19 38.842237955554275 40.0 38.0 41.0 35.0 41.0 20-21 38.85405878037351 40.0 38.0 41.0 35.0 41.0 22-23 38.779673452746316 40.0 38.0 41.0 34.0 41.0 24-25 38.70397198426445 40.0 38.0 41.0 34.0 41.0 26-27 38.548178293209716 40.0 38.0 41.0 34.0 41.0 28-29 38.42169267958113 40.0 38.0 41.0 34.0 41.0 30-31 38.29333828901032 40.0 38.0 41.0 34.0 41.0 32-33 38.139581686166274 40.0 38.0 41.0 33.5 41.0 34-35 38.0986484983422 40.0 37.5 41.0 33.0 41.0 36-37 38.11202734618004 40.0 38.0 41.0 33.0 41.0 38-39 38.071811851142556 40.0 37.0 41.0 33.0 41.0 40-41 38.10474867705908 40.0 37.5 41.0 33.0 41.0 42-43 38.164336188676124 40.0 38.0 41.0 33.0 41.0 44-45 38.143661933208364 40.0 37.5 41.0 33.0 41.0 46-47 38.04173963625658 40.0 37.0 41.0 33.0 41.0 48-49 37.95148290930756 40.0 37.0 41.0 33.0 41.0 50-51 37.84741385325171 40.0 37.0 41.0 33.0 41.0 52-53 37.675532398797614 40.0 36.5 41.0 32.5 41.0 54-55 37.544284875638795 39.0 36.0 41.0 32.0 41.0 56-57 37.376953419522394 39.0 36.0 41.0 32.0 41.0 58-59 37.142632993959396 39.0 35.0 41.0 31.5 41.0 60-61 36.94723043464081 39.0 35.0 40.5 31.0 41.0 62-63 36.710725613791396 38.0 35.0 40.0 31.0 41.0 64-65 36.40280060619207 37.5 35.0 40.0 31.0 41.0 66-67 36.07054162634951 37.0 35.0 40.0 30.5 41.0 68-69 35.812048612597415 36.5 34.0 39.0 30.0 41.0 70-71 35.42303378716629 36.0 34.0 39.0 30.0 41.0 72-73 35.138580244721766 35.5 34.0 39.0 30.0 40.0 74-75 34.82286352522281 35.0 34.0 38.0 29.5 40.0 76-77 33.454220954896364 34.5 32.0 36.0 28.0 39.0 78-79 34.21915681768398 35.0 33.5 37.0 29.0 39.0 80-81 34.18147638919319 35.0 34.0 36.0 30.0 39.0 82-83 33.95526593719529 35.0 34.0 36.0 29.0 37.5 84-85 33.766524986773874 35.0 33.5 35.5 29.0 37.0 86-87 33.552050496130285 35.0 33.0 35.0 29.0 37.0 88-89 33.455698277702275 35.0 33.0 35.0 29.0 36.0 90-91 33.36448171235164 35.0 33.0 35.0 29.0 36.0 92-93 33.1989241780266 35.0 33.0 35.0 29.0 36.0 94-95 33.22599938716549 35.0 33.0 35.0 29.0 35.5 96-97 33.28095561449153 35.0 33.0 35.0 29.0 35.0 98-99 33.37228211679739 35.0 33.0 35.0 30.0 35.0 100 32.17181756666584 34.0 31.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 3.0 19 10.0 20 30.0 21 205.0 22 928.0 23 3300.0 24 8928.0 25 18988.0 26 35564.0 27 57212.0 28 81987.0 29 110502.0 30 141395.0 31 176689.0 32 220608.0 33 280640.0 34 377330.0 35 533378.0 36 852390.0 37 1465274.0 38 1778319.0 39 971890.0 40 41068.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.776644176127924 19.55707141299149 13.299608936541302 24.36667547433928 2 15.848556843512714 20.808175457781232 39.42827072875969 23.914996969946365 3 19.178388067359553 24.70768750526609 29.66395259003563 26.449971837338726 4 13.15297585919871 16.95958116652244 37.340391208778314 32.54705176550054 5 14.050170757530175 37.18185310171437 34.870628517101395 13.897347623654063 6 32.039690698385094 36.43886466817734 17.757986675029997 13.763457958407571 7 28.087863590716257 31.776061360647084 21.984677444258402 18.151397604378257 8 25.723443644425824 35.7736641459769 20.29428898118237 18.2086032284149 9 25.941562792254857 16.113220186179575 20.69340091067888 37.251816110886686 10-11 25.255458602844154 26.149341890795384 27.961337717327922 20.633861789032533 12-13 25.616396188210693 23.570044541858266 28.233022512383254 22.58053675754778 14-15 22.611640743650753 25.041272865656627 25.7514805483412 26.595605842351418 16-17 22.638139816164767 28.20962000808761 26.40469824747025 22.747541928277375 18-19 22.619514551453552 27.412309046187744 28.006645298163008 21.961531104195696 20-21 23.401949367695313 26.57017667109795 27.920703104339722 22.107170856867018 22-23 23.118238772221826 26.481108041293012 27.67677889903 22.72387428745516 24-25 22.82730013512303 26.58654240622424 27.91743503590398 22.66872242274875 26-27 22.869420601931107 26.757758984671675 27.761611393526632 22.611209019870586 28-29 22.836733314611294 26.814894012683133 27.76272878354173 22.58564388916384 30-31 23.018359957759692 26.652574885797716 27.639377943524963 22.68968721291763 32-33 22.79374450952558 26.77451500780032 27.610353002283812 22.821387480390285 34-35 22.952172083134982 26.884720570442983 27.617474566870982 22.545632779551052 36-37 23.064437418581623 26.729488918729928 27.41781049367087 22.78826316901758 38-39 22.72186623262848 27.0458007684913 27.593861938013113 22.638471060867104 40-41 23.029004348773025 26.832516076233855 27.457097158476024 22.6813824165171 42-43 22.80828355936289 26.942637278201236 27.27692936154995 22.972149800885916 44-45 22.855365879000573 27.029451163102834 27.201522861017224 22.91366009687937 46-47 23.00251696742631 26.935782284812916 27.108977888957725 22.95272285880305 48-49 22.93337391730533 27.182946952663062 26.87760231340701 23.006076816624592 50-51 22.913321714802468 27.1836577517411 26.97321162332788 22.92980891012855 52-53 23.111256158066126 27.165776422579807 26.76742534662675 22.95554207272732 54-55 23.105015984409828 26.99184648738468 26.903236243536018 22.999901284669477 56-57 23.097584947572773 27.156184857801723 26.78040344677371 22.965826747851793 58-59 22.97058110723841 27.215983558201607 26.801972952029875 23.01146238253011 60-61 23.037882029902075 27.186701431718557 26.884064425721494 22.891352112657874 62-63 23.107352370554736 27.239427685172323 26.753329984725582 22.89988995954736 64-65 22.97374279327446 27.22134627727803 26.822075596416102 22.982835333031403 66-67 23.131930366083754 27.195389254742725 26.65369845075627 23.018981928417254 68-69 23.023411153564606 27.132773937038852 26.804598807705222 23.039216101691324 70-71 23.03694504881508 27.033419069066788 26.764933337697 23.164702544421132 72-73 23.057167904477147 27.083617660698344 26.699854053022758 23.15936038180175 74-75 22.88585261033361 27.165398699387787 26.772786506902264 23.17596218337634 76-77 23.012196786099544 27.116117768248106 26.672707136383934 23.198978309268416 78-79 22.865197905842642 27.150311686641004 26.735094892071537 23.249395515444817 80-81 23.0245976179416 27.14513842766351 26.674864708413747 23.155399245981144 82-83 23.04428869905386 27.142177369307273 26.812399261410448 23.00113467022842 84-85 23.08746889329874 27.115686179153787 26.70394519354513 23.09289973400234 86-87 22.926303108113117 27.1986741063308 26.785047834781523 23.089974950774554 88-89 23.019197597745553 27.124477183570217 26.74555757927538 23.11076763940885 90-91 22.912396980132783 27.146919783299932 26.80121729696086 23.13946593960643 92-93 23.007284460162282 27.186486267205325 26.812521105470395 22.993708167162 94-95 22.877373175829455 27.28703153846527 26.86132333532934 22.974271950375933 96-97 22.78772297576145 27.33986621719814 27.015349572511422 22.857061234528988 98-99 24.04133234111691 29.36115351343921 27.065534712190527 19.531979433253355 100 30.976956417645397 41.00149483848166 28.021548743872938 0.0 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1723.0 1 1479.5 2 1752.5 3 2385.0 4 3157.0 5 5022.5 6 6735.0 7 7995.5 8 8834.5 9 8784.0 10 8002.0 11 7193.0 12 7666.0 13 9846.0 14 15364.5 15 22876.5 16 28954.5 17 32592.5 18 33717.5 19 33011.5 20 31068.5 21 28701.0 22 27681.0 23 29696.0 24 34440.0 25 41766.5 26 52318.5 27 64236.5 28 76802.5 29 91112.0 30 105351.0 31 118840.5 32 132724.0 33 146684.5 34 160725.0 35 174802.0 36 190160.5 37 205456.5 38 218548.5 39 230270.0 40 241434.5 41 252881.5 42 263028.5 43 272235.5 44 282047.5 45 292034.0 46 301985.5 47 312270.0 48 319998.5 49 322187.5 50 318944.5 51 314461.0 52 305588.0 53 291946.5 54 279431.0 55 266227.0 56 249744.5 57 229369.5 58 208909.0 59 186520.0 60 162251.0 61 139338.5 62 117144.0 63 96015.5 64 77985.5 65 65516.0 66 55440.0 67 41258.5 68 28687.0 69 21886.5 70 15545.5 71 10554.0 72 7513.5 73 5277.0 74 3648.0 75 2452.5 76 1621.0 77 1049.5 78 687.0 79 460.5 80 313.5 81 199.0 82 134.5 83 95.0 84 67.5 85 46.5 86 33.0 87 21.0 88 13.0 89 11.0 90 8.5 91 5.5 92 3.0 93 1.5 94 1.0 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 1.816495145276994E-4 18-19 0.0 20-21 9.851334282880854E-4 22-23 5.310431028121807E-4 24-25 7.128607914264372E-4 26-27 0.002293172770223319 28-29 0.0021478112509069605 30-31 0.0023053650047974716 32-33 0.001159389250606624 34-35 0.0011638045773209897 36-37 0.00716455195339381 38-39 0.003246456767743263 40-41 7.719100907982691E-4 42-43 8.736418963707823E-5 44-45 5.298108369274621E-4 46-47 0.0029793642528279565 48-49 2.487495810830919E-4 50-51 0.0015015851632409817 52-53 0.0030269975834854405 54-55 0.0017438366274199625 56-57 1.8114849088342655E-4 58-59 0.0019531429058860152 60-61 3.4693929748342336E-4 62-63 0.0014120107923331242 64-65 0.0033115237972624017 66-67 0.004332401950551068 68-69 0.0019236751788869616 70-71 0.0018983305685852233 72-73 0.0013839007776216803 74-75 0.023768184733102504 76-77 0.008310242624235223 78-79 0.002373491111909925 80-81 0.005330679512746482 82-83 0.010901569089230323 84-85 0.0052318776698068335 86-87 0.0071064755549725255 88-89 0.009290831423036246 90-91 2.4824900049987415E-4 92-93 6.069873961090489E-5 94-95 3.6140716668346353E-4 96-97 0.003462014059600165 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 158.0 20-21 529.0 22-23 1101.0 24-25 2426.0 26-27 3923.0 28-29 8694.0 30-31 18456.0 32-33 24650.0 34-35 35721.0 36-37 53415.0 38-39 60975.0 40-41 62560.0 42-43 69288.0 44-45 81336.0 46-47 80905.0 48-49 75354.0 50-51 68919.0 52-53 67620.0 54-55 73012.0 56-57 76723.0 58-59 75577.0 60-61 72078.0 62-63 70280.0 64-65 75082.0 66-67 78038.0 68-69 79319.0 70-71 77529.0 72-73 73035.0 74-75 75774.0 76-77 75105.0 78-79 78962.0 80-81 79108.0 82-83 76787.0 84-85 77316.0 86-87 82291.0 88-89 86414.0 90-91 92286.0 92-93 96426.0 94-95 117428.0 96-97 264736.0 98-99 1505041.0 100-101 2982262.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.36286538097406 #Duplication Level Percentage of deduplicated Percentage of total 1 91.12276370486997 78.69622974985995 2 6.234847690602875 10.769186235488263 3 1.4537773346560767 3.766571287404421 4 0.5114669223485244 1.7668699584642695 5 0.23654642300430725 1.0214413443135968 6 0.1280807216328938 0.6636850872167772 7 0.07679054329225585 0.4642295947016667 8 0.05288097385335162 0.3653561940889452 9 0.03677813469167155 0.28586385858061464 >10 0.1426308156612847 1.9642591507066456 >50 0.002900297736074478 0.1585437299937896 >100 5.096149399617076E-4 0.06530111363033002 >500 2.6822710798488585E-5 0.01246269555071356 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.3973039579053798E-5 2 0.0 4.1919118737161396E-5 0.0 0.0 1.3973039579053798E-5 3 0.0 4.1919118737161396E-5 0.0 0.0 1.3973039579053798E-5 4 0.0 1.6767647494864558E-4 0.0 0.0 1.3973039579053798E-5 5 0.0 1.6767647494864558E-4 0.0 0.0 1.3973039579053798E-5 6 0.0 1.6767647494864558E-4 0.0 0.0 1.3973039579053798E-5 7 0.0 1.6767647494864558E-4 0.0 0.0 1.3973039579053798E-5 8 0.0 1.8164951452769937E-4 0.0 0.0 4.1919118737161396E-5 9 0.0 3.912451082135064E-4 0.0 0.0 4.1919118737161396E-5 10-11 0.0 3.9823162800303323E-4 0.0 0.0 4.1919118737161396E-5 12-13 0.0 4.1919118737161396E-4 0.0 0.0 4.1919118737161396E-5 14-15 0.0 5.868676623202596E-4 0.0 6.986519789526899E-6 6.28786781057421E-5 16-17 6.986519789526899E-6 6.427598206364747E-4 0.0 1.3973039579053798E-5 9.78112770533766E-5 18-19 1.3973039579053798E-5 6.846789393736361E-4 0.0 1.3973039579053798E-5 1.1178431663243038E-4 20-21 1.3973039579053798E-5 7.475576174793782E-4 0.0 2.7946079158107596E-5 1.1178431663243038E-4 22-23 1.3973039579053798E-5 8.244093351641741E-4 0.0 4.1919118737161396E-5 1.257573562114842E-4 24-25 1.3973039579053798E-5 9.431801715861314E-4 0.0 5.589215831621519E-5 1.4671691558006489E-4 26-27 1.3973039579053798E-5 9.781127705337659E-4 0.0 7.68517176847959E-5 1.537034353695918E-4 28-29 1.3973039579053798E-5 9.920858101128197E-4 0.0 4.2617770716114087E-4 1.537034353695918E-4 30-31 2.7946079158107596E-5 0.0010898970871661964 0.0 0.0019771851004361128 1.6767647494864558E-4 32-33 2.7946079158107596E-5 0.001110856646534777 0.0 0.004897550372458356 1.6767647494864558E-4 34-35 4.1919118737161396E-5 0.0012296274829567341 0.0 0.008600405860907614 1.956225541067532E-4 36-37 5.589215831621519E-5 0.0013483983193786917 0.0 0.014224554291476767 1.956225541067532E-4 38-39 5.589215831621519E-5 0.00139730395790538 0.0 0.02300660966691208 1.956225541067532E-4 40-41 6.986519789526899E-5 0.0014951152349587564 0.0 0.03317898248046325 2.0260907389628007E-4 42-43 6.986519789526899E-5 0.001523061314116864 0.0 0.042708595473377936 2.165821134753339E-4 44-45 6.986519789526899E-5 0.0017116973484340905 0.0 0.053216321236826396 2.3055515305438768E-4 46-47 6.986519789526899E-5 0.001872387303593209 0.0 0.06503052620091637 2.515147124229684E-4 48-49 6.986519789526899E-5 0.0018793738233827358 0.0 0.07653033777447765 2.7946079158107595E-4 50-51 6.986519789526899E-5 0.0022077402534905 0.0 0.08786247287309029 2.7946079158107595E-4 52-53 6.986519789526899E-5 0.0022356863326486076 0.0 0.09930639228833535 2.8644731137060286E-4 54-55 6.986519789526899E-5 0.0022496593722276612 0.0 0.1111625163711625 2.9343383116012977E-4 56-57 6.986519789526899E-5 0.002291578490964823 0.0 0.12134886222429273 2.9343383116012977E-4 58-59 6.986519789526899E-5 0.002305551530543877 0.0 0.13143739680036953 2.9343383116012977E-4 60-61 6.986519789526899E-5 0.0023334976097019846 0.0 0.14044302080906973 2.9343383116012977E-4 62-63 6.986519789526899E-5 0.00241034932738678 0.0 0.14917617054597837 2.9343383116012977E-4 64-65 6.986519789526899E-5 0.0026548775200202217 0.0 0.15786740116414982 2.9343383116012977E-4 66-67 6.986519789526899E-5 0.0027037831585469104 0.0 0.1661464271147392 2.9343383116012977E-4 68-69 6.986519789526899E-5 0.002773648356442179 0.0 0.1750053342078593 2.9343383116012977E-4 70-71 6.986519789526899E-5 0.002801594435600287 0.0 0.182068705715071 3.2137991031823735E-4 72-73 6.986519789526899E-5 0.0028085809553898135 0.0 0.18797231493722122 4.1919118737161396E-4 74-75 6.986519789526899E-5 0.002843513554337448 0.0 0.19226902460778028 4.1919118737161396E-4 76-77 6.986519789526899E-5 0.0028994057126536634 0.0 0.19647490952107546 4.1919118737161396E-4 78-79 6.986519789526899E-5 0.0029343383116012976 0.0 0.199080881402569 4.2617770716114087E-4 80-81 6.986519789526899E-5 0.0029413248313908246 0.0 0.19987035813878554 4.4713726652972154E-4 82-83 6.986519789526899E-5 0.0029483113511803516 0.0 0.20042229320215815 4.6111030610877535E-4 84-85 6.986519789526899E-5 0.0029622843907594052 0.0 0.2006109292364754 4.6111030610877535E-4 86-87 6.986519789526899E-5 0.002990230469917513 0.0 0.20070175399373924 4.7508334568782917E-4 88 6.986519789526899E-5 0.003046122628233728 0.0 0.20070874051352877 4.7508334568782917E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7900 0.0 46.04607 1 GTATCAA 13335 0.0 32.11819 1 TCAACGC 15520 0.0 26.881327 4 ATCAACG 15925 0.0 26.249311 3 CAACGCA 16190 0.0 25.768883 5 TATCAAC 16500 0.0 25.459116 2 AACGCAG 16695 0.0 25.11251 6 GTACATG 20935 0.0 23.167833 1 TACATGG 21260 0.0 22.562334 2 ACATGGG 21950 0.0 21.403662 3 ACGCAGA 19815 0.0 21.13764 7 CATGGGG 16955 0.0 19.854664 4 CGCAGAG 21250 0.0 19.768255 8 GTGGTAT 4175 0.0 19.099485 1 GCAGAGT 24160 0.0 17.370216 9 GAGTACT 13035 0.0 17.16984 12-13 CAGAGTA 23150 0.0 16.823164 10-11 TGGTATC 4405 0.0 16.609268 2 ATGGGGG 9825 0.0 16.60865 5 AGAGTAC 21270 0.0 16.310015 10-11 >>END_MODULE