##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138695_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9020220 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.115778329131665 33.0 31.0 34.0 30.0 34.0 2 32.38251561491848 34.0 31.0 34.0 31.0 34.0 3 32.40375312353801 34.0 31.0 34.0 30.0 34.0 4 36.04808230841376 37.0 35.0 37.0 35.0 37.0 5 35.78913186152888 37.0 35.0 37.0 35.0 37.0 6 35.88541620936075 37.0 35.0 37.0 35.0 37.0 7 35.843585965752496 37.0 35.0 37.0 35.0 37.0 8 35.8560389879626 37.0 35.0 37.0 35.0 37.0 9 37.63708401790644 39.0 37.0 39.0 35.0 39.0 10-11 37.54377720277333 39.0 37.0 39.0 35.0 39.0 12-13 37.502877590568744 39.0 37.0 39.0 35.0 39.0 14-15 38.78483396192111 40.0 38.0 41.0 35.0 41.0 16-17 38.73572706652388 40.0 38.0 41.0 34.0 41.0 18-19 38.731157056036324 40.0 38.0 41.0 34.0 41.0 20-21 38.74250927270076 40.0 38.0 41.0 34.0 41.0 22-23 38.66434263734118 40.0 38.0 41.0 34.0 41.0 24-25 38.58779350827227 40.0 38.0 41.0 34.0 41.0 26-27 38.423435588317545 40.0 38.0 41.0 34.0 41.0 28-29 38.29081625897054 40.0 38.0 41.0 34.0 41.0 30-31 38.15860544633709 40.0 38.0 41.0 33.5 41.0 32-33 38.004028346211 40.0 37.0 41.0 33.0 41.0 34-35 37.962800592543935 40.0 37.0 41.0 33.0 41.0 36-37 37.98323616795199 40.0 37.0 41.0 33.0 41.0 38-39 37.94791435821551 40.0 37.0 41.0 33.0 41.0 40-41 37.98290980653468 40.0 37.0 41.0 33.0 41.0 42-43 38.04599230438658 40.0 37.0 41.0 33.0 41.0 44-45 38.0262145804128 40.0 37.0 41.0 33.0 41.0 46-47 37.92745581171774 40.0 37.0 41.0 33.0 41.0 48-49 37.844758635207924 40.0 37.0 41.0 33.0 41.0 50-51 37.74747363263035 40.0 37.0 41.0 33.0 41.0 52-53 37.574468661793034 40.0 36.0 41.0 32.0 41.0 54-55 37.442083496100224 39.0 36.0 41.0 32.0 41.0 56-57 37.276128817438085 39.0 36.0 41.0 31.5 41.0 58-59 37.04450988702672 39.0 35.0 41.0 31.0 41.0 60-61 36.85099678647559 39.0 35.0 40.0 31.0 41.0 62-63 36.613966867320855 38.0 35.0 40.0 31.0 41.0 64-65 36.30248064807559 38.0 35.0 40.0 30.5 41.0 66-67 35.96505372841467 37.0 34.0 40.0 30.0 41.0 68-69 35.704114224208766 36.5 34.0 39.0 30.0 41.0 70-71 35.306091858520105 36.0 34.0 39.0 29.0 40.5 72-73 35.01505892449879 36.0 34.0 39.0 29.0 40.0 74-75 34.69386899514832 35.0 34.0 37.5 29.0 40.0 76-77 33.329189353119645 34.5 31.5 36.0 27.0 39.0 78-79 34.11066692744152 35.0 33.0 37.0 29.0 39.0 80-81 34.07395572294899 35.0 33.0 36.0 29.0 39.0 82-83 33.84289803390672 35.0 33.0 36.0 29.0 37.5 84-85 33.65022880322247 35.0 33.0 35.5 29.0 37.0 86-87 33.43081097687029 35.0 33.0 35.0 29.0 37.0 88-89 33.33169304715595 35.0 33.0 35.0 29.0 36.0 90-91 33.24013602455605 35.0 33.0 35.0 29.0 36.0 92-93 33.07218318020746 35.0 33.0 35.0 29.0 36.0 94-95 33.103586787683255 35.0 33.0 35.0 29.0 35.5 96-97 33.15993426474479 35.0 33.0 35.0 29.0 35.0 98-99 33.26230322405286 35.0 33.0 35.0 29.0 35.0 100 32.03065394898968 34.0 31.0 35.0 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 8.0 20 40.0 21 287.0 22 1305.0 23 4592.0 24 12262.0 25 26490.0 26 48658.0 27 76931.0 28 112234.0 29 150714.0 30 192821.0 31 239227.0 32 297110.0 33 374364.0 34 500200.0 35 695574.0 36 1083458.0 37 1846371.0 38 2189607.0 39 1124545.0 40 43419.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.62653239056254 19.705339781069643 13.255419490877163 24.41270833749066 2 15.794592593085314 20.782286906527776 39.50040021196822 23.922720288418688 3 19.41521381961859 24.512428743423108 29.604898771870307 26.46745866508799 4 13.262481402892611 16.814612060459723 37.17738591741665 32.745520619231016 5 13.929150286800102 37.25007815773895 34.972883144757 13.847888410703952 6 32.219679786080604 36.36474498404695 17.635645250337575 13.779929979534867 7 28.16109806634428 31.682786007436626 21.827860074366257 18.328255851852838 8 25.533700951861483 36.285766865996614 20.268020070463912 17.912512111677987 9 25.688929981752107 16.267951335998458 20.58675952471226 37.45635915753718 10-11 25.25646824578558 26.255357408134174 27.951857050049778 20.536317296030475 12-13 25.474107061690294 23.586902536745225 28.443574546962267 22.495415854602214 14-15 22.425650372163872 25.214008084060037 25.75272000017738 26.607621543598714 16-17 22.43077183688316 28.44590962360185 26.527894198460366 22.595424341054628 18-19 22.46630902572221 27.661509364516608 28.058284609466288 21.813897000294894 20-21 23.036746470248232 26.80321934270875 28.071502539720566 22.088531647322444 22-23 22.814460197943923 26.74204367459476 27.929367927930965 22.514128199530347 24-25 22.644104822380456 26.839575153026225 27.992431476169344 22.523888548423983 26-27 22.589157002717997 26.998838789565294 27.956586384143367 22.45541782357334 28-29 22.55466170466463 27.06548080857231 27.943417456786335 22.436440029976726 30-31 22.748455370565424 26.93569245225585 27.824325487169467 22.491526690009263 32-33 22.514216094896494 27.111956254362855 27.800288429097968 22.573539221642683 34-35 22.686763592854533 27.11934618753782 27.795340382100502 22.39854983750715 36-37 22.734015800992534 27.07318514540041 27.697681232712902 22.49511782089416 38-39 22.50708330130025 27.181079213491387 27.838689897881828 22.473147587326533 40-41 22.793573704057415 27.046645255125508 27.64758444326746 22.512196597549615 42-43 22.62246482003315 27.154810061655475 27.547331752506445 22.675393365804933 44-45 22.679633562203232 27.179894581078234 27.47579938085194 22.664672475866592 46-47 22.77179449043696 27.23452960692836 27.242769473202394 22.750906429432284 48-49 22.62331870192513 27.376898540233874 27.225299224290744 22.774483533550256 50-51 22.658512353582204 27.457993874399932 27.186109916720426 22.69738385529744 52-53 22.85268845705887 27.322695952139863 27.063177937426858 22.761437653374404 54-55 22.786702070333856 27.197580105666002 27.135641691058648 22.88007613294149 56-57 22.737668564244228 27.383288430444686 27.141331001672107 22.73771200363898 58-59 22.734978744262627 27.41956534799714 27.1071938666257 22.738262041114535 60-61 22.777226272848118 27.34699569665276 27.15814477241489 22.717633258084238 62-63 22.763155343004147 27.4365108119483 27.09348290646315 22.706850938584406 64-65 22.748134185998563 27.428584416617557 27.058801755334432 22.764479642049448 66-67 22.77233703845249 27.41402981107087 26.960851786951245 22.85278136352539 68-69 22.71146282323461 27.44859066508453 27.036768691915782 22.803177819765082 70-71 22.734754186333472 27.277299173289272 27.069916635538377 22.91803000483888 72-73 22.737880367431764 27.298996708526268 27.02424951256403 22.93887341147794 74-75 22.568264840182646 27.484447211844472 27.05933305659333 22.88795489137955 76-77 22.789837605735652 27.340233361174487 27.00567707253087 22.86425196055899 78-79 22.66915501454834 27.37685177505684 26.960078121360787 22.993915089034036 80-81 22.687000128858433 27.409622087531105 26.99978888537311 22.90358889823735 82-83 22.71359779106391 27.38543449158253 27.06618150382799 22.834786213525568 84-85 22.71476293308617 27.407746438752984 27.025516309604182 22.851974318556667 86-87 22.672788564506114 27.39862238506257 27.09387052007166 22.834718530359652 88-89 22.66337150825978 27.39488414895454 27.06651394557566 22.87523039721002 90-91 22.68064012266404 27.438176680948306 27.09009912292133 22.791084073466326 92-93 22.73009387210993 27.44806939582997 27.088995491703304 22.732841240356798 94-95 22.583060370294074 27.483289940591128 27.16555708228732 22.768092606827476 96-97 22.62507202992284 27.55296305619062 27.20845927735005 22.61350563653649 98-99 23.732322118056583 29.585364416915738 27.34932478933625 19.33298867569143 100 30.58029752570397 41.06362673962268 28.356075734673354 0.0 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1881.0 1 1626.5 2 2017.5 3 2833.5 4 3679.5 5 5718.5 6 7682.0 7 9235.0 8 10454.0 9 10626.5 10 9806.0 11 8748.5 12 8978.5 13 11288.0 14 17653.5 15 26411.5 16 33377.0 17 37519.5 18 38918.5 19 38368.0 20 36836.5 21 35191.0 22 34921.5 23 37724.5 24 44066.0 25 53774.5 26 66956.0 27 81759.5 28 97731.0 29 116494.5 30 134586.0 31 152098.5 32 170984.5 33 189507.5 34 207715.5 35 226178.5 36 246884.5 37 267023.5 38 284741.0 39 300333.0 40 315764.5 41 331787.0 42 344867.0 43 356836.5 44 368168.0 45 377890.0 46 386419.5 47 393713.5 48 397496.5 49 397510.5 50 395661.0 51 391162.5 52 382512.0 53 370460.5 54 356819.0 55 338343.0 56 315222.5 57 289884.5 58 261096.0 59 227651.5 60 193374.0 61 161479.0 62 130916.5 63 102838.0 64 78667.5 65 59705.0 66 45034.0 67 34377.5 68 26185.0 69 19209.5 70 14011.0 71 10008.0 72 6989.0 73 4650.5 74 3018.0 75 1988.5 76 1330.0 77 879.5 78 590.0 79 410.0 80 277.5 81 178.0 82 125.5 83 80.0 84 50.5 85 38.0 86 32.5 87 29.0 88 22.0 89 13.5 90 9.5 91 7.0 92 4.5 93 2.5 94 1.5 95 1.0 96 1.0 97 1.5 98 2.0 99 2.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 1.2194824516475208E-4 18-19 0.0 20-21 8.924738621568022E-4 22-23 5.654685017413104E-4 24-25 7.319387460425403E-4 26-27 0.002274329767498596 28-29 0.0018150899585226965 30-31 0.002479172450012713 32-33 0.0011702875363039913 34-35 0.0011800439468499257 36-37 0.006707608756032631 38-39 0.0030932097983142233 40-41 7.997985878641875E-4 42-43 5.1856810899471946E-5 44-45 5.702754180046075E-4 46-47 0.0031604773886381955 48-49 2.3212122012912365E-4 50-51 0.0014135985412625505 52-53 0.0028978276984456103 54-55 0.001417714123163761 56-57 1.2411240239723105E-4 58-59 0.0017828674598125039 60-61 3.238740312911848E-4 62-63 0.001322827769108761 64-65 0.0032469061043458214 66-67 0.0040490029264563035 68-69 0.0015912548362662024 70-71 0.0016322693994543632 72-73 0.001147698713784982 74-75 0.022563055162173863 76-77 0.0081064434174103 78-79 0.0021728309502016966 80-81 0.005077729596566101 82-83 0.010570995963150693 84-85 0.00490413490430603 86-87 0.006967719764474536 88-89 0.009378071213315456 90-91 1.9426534906064155E-4 92-93 3.166994094268588E-5 94-95 3.2338294782313155E-4 96-97 0.0032285005370710496 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 249.0 20-21 627.0 22-23 1374.0 24-25 3356.0 26-27 4816.0 28-29 10013.0 30-31 21108.0 32-33 29101.0 34-35 41942.0 36-37 63429.0 38-39 73202.0 40-41 74255.0 42-43 81072.0 44-45 95783.0 46-47 96034.0 48-49 90735.0 50-51 82860.0 52-53 81520.0 54-55 88553.0 56-57 92386.0 58-59 91797.0 60-61 88453.0 62-63 85685.0 64-65 91141.0 66-67 96742.0 68-69 96762.0 70-71 95590.0 72-73 90275.0 74-75 92371.0 76-77 92895.0 78-79 99232.0 80-81 98668.0 82-83 95036.0 84-85 95858.0 86-87 102968.0 88-89 110466.0 90-91 118374.0 92-93 125724.0 94-95 153147.0 96-97 342712.0 98-99 1908642.0 100-101 3815267.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.92083483258837 #Duplication Level Percentage of deduplicated Percentage of total 1 90.44073550530484 77.70743497489107 2 6.6929448187779945 11.501268126357042 3 1.613767280062419 4.159686957854354 4 0.5905957983223175 2.0297793616189006 5 0.2610829218596637 1.1216231303356872 6 0.13912680083873802 0.7172334525390974 7 0.0767445084203275 0.46157665626038025 8 0.04481905907658228 0.3080712777816837 9 0.03149970462157339 0.24358328262589754 >10 0.10448784670679917 1.4487202411193758 >50 0.0034350336573207227 0.1969499631909533 >100 7.607223515202177E-4 0.10407257542554946 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.1086204105886552E-5 1.1086204105886552E-5 2 0.0 2.2172408211773104E-5 0.0 3.3258612317659656E-5 1.1086204105886552E-5 3 0.0 2.2172408211773104E-5 0.0 3.3258612317659656E-5 1.1086204105886552E-5 4 0.0 5.5431020529432766E-5 0.0 6.651722463531931E-5 1.1086204105886552E-5 5 0.0 5.5431020529432766E-5 0.0 6.651722463531931E-5 1.1086204105886552E-5 6 6.651722463531931E-5 5.5431020529432766E-5 0.0 7.760342874120586E-5 1.1086204105886552E-5 7 6.651722463531931E-5 6.651722463531931E-5 0.0 7.760342874120586E-5 1.1086204105886552E-5 8 6.651722463531931E-5 8.868963284709242E-5 0.0 7.760342874120586E-5 1.1086204105886552E-5 9 7.760342874120586E-5 2.7715510264716384E-4 0.0 1.2194824516475208E-4 3.3258612317659656E-5 10-11 7.760342874120586E-5 2.7715510264716384E-4 0.0 1.9400857185301467E-4 3.3258612317659656E-5 12-13 7.760342874120586E-5 2.826982047001071E-4 0.0 2.2172408211773107E-4 3.3258612317659656E-5 14-15 7.760342874120586E-5 3.824740416530861E-4 0.0 2.3281028622361763E-4 4.988791847648949E-5 16-17 2.161809800647878E-4 3.9910334781191587E-4 0.0 2.60525796488334E-4 5.5431020529432766E-5 18-19 2.2172408211773107E-4 4.3236196012957554E-4 0.0 2.7715510264716384E-4 5.5431020529432766E-5 20-21 2.2172408211773107E-4 4.656205724472352E-4 0.0 3.325861231765966E-4 5.5431020529432766E-5 22-23 2.2172408211773107E-4 4.933360827119516E-4 0.0 3.713878375471995E-4 7.20603266882626E-5 24-25 2.328102862236176E-4 5.487671032413843E-4 0.0 4.101895519178024E-4 8.868963284709242E-5 26-27 2.328102862236176E-4 5.764826135061008E-4 0.0 4.656205724472352E-4 8.868963284709242E-5 28-29 2.328102862236176E-4 5.82025715559044E-4 0.0 8.203791038356049E-4 9.423273490003568E-5 30-31 2.328102862236176E-4 6.984308586708528E-4 0.0 0.002028775351377239 1.1086204105886552E-4 32-33 2.549826944353907E-4 7.095170627767393E-4 0.0 0.004473283356725224 1.3303444927063862E-4 34-35 2.7161200059422054E-4 7.982066956238318E-4 0.0 0.008181618630144275 1.4966375542946846E-4 36-37 2.7715510264716384E-4 8.924394305238675E-4 0.0 0.013769065499511098 1.5520685748241173E-4 38-39 2.7715510264716384E-4 9.42327349000357E-4 0.0 0.02255488225342619 1.5520685748241173E-4 40-41 2.7715510264716384E-4 0.0010088445736356763 0.0 0.031673285130517884 1.5520685748241173E-4 42-43 2.882413067530504E-4 0.0010587324921121659 0.0 0.04012097265920343 1.5520685748241173E-4 44-45 2.882413067530504E-4 0.0011806807372769178 0.0 0.04982694435390711 1.5520685748241173E-4 46-47 2.882413067530504E-4 0.0012749134721769535 0.0 0.06117367425628199 1.5520685748241173E-4 48-49 3.0487061291188016E-4 0.0012749134721769535 0.0 0.07172774056508599 1.7183616364124156E-4 50-51 3.5475853138836966E-4 0.001463378941977025 0.0 0.08213214311846052 1.7737926569418483E-4 52-53 3.6584473549425625E-4 0.001463378941977025 0.0 0.09225939056918789 1.8292236774712813E-4 54-55 3.6584473549425625E-4 0.001463378941977025 0.0 0.10254738797945062 1.884654698000714E-4 56-57 3.6584473549425625E-4 0.001485551350188798 0.0 0.11245291134806024 1.9400857185301467E-4 58-59 3.6584473549425625E-4 0.001485551350188798 0.0 0.12174869349084613 1.9955167390595793E-4 60-61 3.713878375471995E-4 0.0015077237584005712 0.0 0.13044027750986117 1.9955167390595793E-4 62-63 3.769309396001428E-4 0.0015520685748241173 0.0 0.1387438443851702 1.9955167390595793E-4 64-65 3.824740416530861E-4 0.0017072754323065292 0.0 0.1472358767302793 1.9955167390595793E-4 66-67 3.8801714370602933E-4 0.0017072754323065292 0.0 0.15468026278738212 2.050947759589012E-4 68-69 3.8801714370602933E-4 0.0017349909425712455 0.0 0.16270113145799103 2.106378780118445E-4 70-71 4.21275756023689E-4 0.0017460771466771322 0.0 0.16943600045231713 2.2172408211773107E-4 72-73 4.7670677655312175E-4 0.0017516202487300753 0.0 0.1744913095246014 2.6606889854127725E-4 74-75 4.7670677655312175E-4 0.001784878861047735 0.0 0.1784102826760323 2.826982047001071E-4 76-77 4.7670677655312175E-4 0.0018680253918418842 0.0 0.18212970415355723 2.882413067530504E-4 78-79 4.7670677655312175E-4 0.0019179133103183737 0.0 0.18455203975069345 2.882413067530504E-4 80-81 4.7670677655312175E-4 0.0019289995144242602 0.0 0.18534470334426434 2.993275108589369E-4 82-83 4.7670677655312175E-4 0.0019400857185301467 0.0 0.185865754937241 3.436723272824831E-4 84-85 4.8224987860606504E-4 0.0019511719226360334 0.0 0.18599878938651165 3.5475853138836966E-4 86-87 4.988791847648948E-4 0.0019622581267419196 0.0 0.18611519452962344 3.5475853138836966E-4 88 5.099653888707814E-4 0.002028775351377239 0.0 0.18611519452962344 3.5475853138836966E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9440 0.0 44.04427 1 GTATCAA 15495 0.0 32.22098 1 TCAACGC 17765 0.0 27.405867 4 ATCAACG 18435 0.0 26.40983 3 CAACGCA 18675 0.0 26.13682 5 AACGCAG 19425 0.0 25.361717 6 TATCAAC 19500 0.0 25.348951 2 GTACATG 24795 0.0 21.55251 1 ACGCAGA 23320 0.0 21.090256 7 CGCAGAG 23715 0.0 20.738974 8 TACATGG 25245 0.0 20.6117 2 ACATGGG 25865 0.0 19.654232 3 GTGGTAT 5360 0.0 18.42878 1 TGGTATC 4985 0.0 17.659477 2 CATGGGG 19985 0.0 17.495634 4 GAGTACT 15455 0.0 17.195127 12-13 GCAGAGT 28755 0.0 16.90275 9 GAGTACA 19000 0.0 16.48842 1 CAGAGTA 27790 0.0 16.21812 10-11 TATACCG 695 0.0 16.056185 5 >>END_MODULE