##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138692_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 12004269 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.163108140945525 33.0 31.0 34.0 30.0 34.0 2 32.42111993658256 34.0 31.0 34.0 31.0 34.0 3 32.44074262247872 34.0 31.0 34.0 30.0 34.0 4 36.07510278218524 37.0 35.0 37.0 35.0 37.0 5 35.83084034521386 37.0 35.0 37.0 35.0 37.0 6 35.92276356019679 37.0 35.0 37.0 35.0 37.0 7 35.88231353362708 37.0 35.0 37.0 35.0 37.0 8 35.895109398164934 37.0 35.0 37.0 35.0 37.0 9 37.681520882279465 39.0 37.0 39.0 35.0 39.0 10-11 37.591334132882224 39.0 37.0 39.0 35.0 39.0 12-13 37.55063919344026 39.0 37.0 39.0 35.0 39.0 14-15 38.840413314629984 40.0 38.0 41.0 35.0 41.0 16-17 38.79878137519244 40.0 38.0 41.0 35.0 41.0 18-19 38.80170042007556 40.0 38.0 41.0 35.0 41.0 20-21 38.816067321236744 40.0 38.0 41.0 34.5 41.0 22-23 38.740906786292086 40.0 38.0 41.0 34.0 41.0 24-25 38.66722574447752 40.0 38.0 41.0 34.0 41.0 26-27 38.50798051217146 40.0 38.0 41.0 34.0 41.0 28-29 38.37905622624609 40.0 38.0 41.0 34.0 41.0 30-31 38.24529546038532 40.0 38.0 41.0 34.0 41.0 32-33 38.089235331855946 40.0 37.5 41.0 33.0 41.0 34-35 38.05004339622861 40.0 37.5 41.0 33.0 41.0 36-37 38.06760461379547 40.0 37.5 41.0 33.0 41.0 38-39 38.03283629804268 40.0 37.0 41.0 33.0 41.0 40-41 38.064900481342654 40.0 37.0 41.0 33.0 41.0 42-43 38.11933739183979 40.0 38.0 41.0 33.0 41.0 44-45 38.10177399914268 40.0 37.0 41.0 33.0 41.0 46-47 38.007225676751425 40.0 37.0 41.0 33.0 41.0 48-49 37.92716774751226 40.0 37.0 41.0 33.0 41.0 50-51 37.82682629925981 40.0 37.0 41.0 33.0 41.0 52-53 37.65945387392978 40.0 36.5 41.0 32.5 41.0 54-55 37.52713309646296 39.0 36.0 41.0 32.0 41.0 56-57 37.3670096072957 39.0 36.0 41.0 32.0 41.0 58-59 37.14397316202843 39.0 35.0 41.0 31.0 41.0 60-61 36.95074373752158 39.0 35.0 40.5 31.0 41.0 62-63 36.7160189229819 38.0 35.0 40.0 31.0 41.0 64-65 36.40901908114677 38.0 35.0 40.0 31.0 41.0 66-67 36.08116771046721 37.0 35.0 40.0 30.0 41.0 68-69 35.820300958194025 37.0 34.0 39.5 30.0 41.0 70-71 35.43484287714388 36.0 34.0 39.0 30.0 41.0 72-73 35.142934589341486 36.0 34.0 39.0 30.0 40.0 74-75 34.82360459490231 35.0 34.0 38.0 29.0 40.0 76-77 33.452311170009516 34.5 32.0 36.0 28.0 39.0 78-79 34.22196589140418 35.0 33.5 37.0 29.0 39.0 80-81 34.181707608582414 35.0 34.0 36.0 29.0 39.0 82-83 33.952556688985645 35.0 34.0 36.0 29.0 37.5 84-85 33.76179439567584 35.0 33.0 36.0 29.0 37.0 86-87 33.539639346260486 35.0 33.0 35.0 29.0 37.0 88-89 33.437798322947174 35.0 33.0 35.0 29.0 36.0 90-91 33.34418891190329 35.0 33.0 35.0 29.0 36.0 92-93 33.182793400755486 35.0 33.0 35.0 29.0 36.0 94-95 33.204158425511494 35.0 33.0 35.0 29.0 35.5 96-97 33.25524520473313 35.0 33.0 35.0 29.0 35.0 98-99 33.34961293007143 35.0 33.0 35.0 29.5 35.0 100 32.16489742045627 34.0 31.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 12.0 20 80.0 21 355.0 22 1752.0 23 5868.0 24 15448.0 25 33234.0 26 60847.0 27 97927.0 28 141526.0 29 190253.0 30 243010.0 31 304279.0 32 379309.0 33 481978.0 34 648305.0 35 904251.0 36 1420452.0 37 2456193.0 38 2971348.0 39 1583768.0 40 64074.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.76910988915693 19.5729869099068 13.392543935828163 24.265359265108106 2 15.658404522591088 20.683691776650456 39.89324964310613 23.764654057652322 3 19.182109297950586 24.79129716270104 29.767585181571654 26.259008357776718 4 13.20357782718798 16.854270759843853 37.387832611881656 32.55431880108651 5 13.785754051329574 37.4383729654842 34.97466609586973 13.801206887316503 6 31.918228423571648 36.45768851064567 17.788421768955693 13.835661296826988 7 27.997306624834884 31.957339509802722 21.948791717346555 18.096562148015842 8 25.53947266593243 36.20202946135246 20.31088273679972 17.9476151359154 9 25.860191903397034 16.32719993195754 20.659300453863537 37.15330771078189 10-11 25.215213021301004 26.209850845561693 27.98930113945297 20.58563499368433 12-13 25.550643691839962 23.63205539629277 28.455435312221013 22.361865599646258 14-15 22.52147965028108 25.156483914180868 25.975646663699386 26.34638977183867 16-17 22.380629499368705 28.337305605883785 26.68860250243799 22.593462392309526 18-19 22.402834358343686 27.541223043235703 28.321824510930238 21.734118087490376 20-21 23.049478862722683 26.68133637007607 28.31442283685189 21.95476193034936 22-23 22.8433321732981 26.569582243179322 28.159983050210585 22.427102533311995 24-25 22.62088681687581 26.68467142974111 28.246260657384276 22.448181095998805 26-27 22.539888062470244 26.88101906006158 28.17246099986744 22.406631877600738 28-29 22.508790144524752 26.993793518401628 28.14465391749784 22.35276241957578 30-31 22.745650469579047 26.81444245270594 28.023373434724324 22.41653364299069 32-33 22.465402277601015 26.993085382343047 28.041169454151216 22.50034288590472 34-35 22.61358640820197 27.007773984312234 28.05548911844315 22.323150489042646 36-37 22.68459656085441 26.99081286507382 27.9261629011691 22.398427672902674 38-39 22.469688393358105 27.120192403459082 28.026007671824615 22.38411153135819 40-41 22.753171954584626 26.966290777179523 27.85171893133419 22.42881833690166 42-43 22.612236069872047 27.084250328506123 27.69277202873303 22.610741572888795 44-45 22.68706675225071 27.157295658733048 27.575185261394985 22.580452327621256 46-47 22.698355272386838 27.188486322393977 27.358784826947414 22.754373578271768 48-49 22.65876588866485 27.35489690157351 27.272039854808305 22.71429735495333 50-51 22.67500616131681 27.424385156729336 27.209561870690358 22.691046811263494 52-53 22.802839882632156 27.29560162089242 27.112509556800607 22.78904893967482 54-55 22.7597094412756 27.205013328351924 27.19390209606126 22.841375134311214 56-57 22.72091730239912 27.36139341970484 27.139253923510747 22.778435354385294 58-59 22.736544073339225 27.445373933403435 27.125731733537627 22.692350259719717 60-61 22.80859357854673 27.36070427908776 27.157132046058663 22.673570096306847 62-63 22.789720397997286 27.40712716380289 27.111686358250125 22.691466079949695 64-65 22.728658991343504 27.374725377949716 27.13300126798896 22.76361436271782 66-67 22.802973707974804 27.37306643886928 26.983131912320896 22.84082794083502 68-69 22.71271523944371 27.384549485114874 27.10901914959578 22.793716125845627 70-71 22.732352662605507 27.198121231934536 27.139691160306402 22.92983494515356 72-73 22.827686692716462 27.221552341567467 27.06218147390725 22.88857949180882 74-75 22.624923818944513 27.370387309206446 27.093539322012205 22.911149549836836 76-77 22.79114078952979 27.213571985797845 27.032484589490185 22.96280263518218 78-79 22.705168912769675 27.231560605193483 27.051135114294578 23.01213536774226 80-81 22.729673318364377 27.261869839881612 27.079527027542806 22.9289298142112 82-83 22.775058744496903 27.259995022486706 27.12608200381285 22.838864229203544 84-85 22.85991817308237 27.233119423340028 27.0802241194485 22.826738284129107 86-87 22.753279316931398 27.218231075552303 27.142736173049503 22.8857534344668 88-89 22.752635689961444 27.137519004250844 27.17904106661255 22.93080423917516 90-91 22.79976410746036 27.175568369949566 27.16290737144229 22.861760151147788 92-93 22.840843883752946 27.08996087114229 27.2116166011451 22.85757864395967 94-95 22.682660604556464 27.14020194973758 27.299911641654163 22.8772258040518 96-97 22.72763871073817 27.241567696810343 27.340161079092194 22.690632513359294 98-99 23.858605387218162 29.220859558582763 27.505231303194538 19.41530375100454 100 22.86051929980472 30.201168746126594 21.15854371543166 25.77976823863703 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1900.0 1 1725.5 2 2615.0 3 3962.0 4 5420.5 5 8702.0 6 11793.0 7 14470.0 8 16741.0 9 17026.0 10 15267.0 11 13232.0 12 13611.5 13 17403.0 14 27417.5 15 41179.0 16 52380.5 17 59077.0 18 61206.0 19 59570.5 20 55938.0 21 52376.5 22 51020.0 23 54315.5 24 62598.5 25 75822.0 26 93757.0 27 113827.5 28 136021.5 29 161418.0 30 186040.0 31 209525.5 32 233529.0 33 256472.5 34 278838.0 35 300963.5 36 326058.0 37 351702.5 38 372578.0 39 389733.0 40 409636.5 41 428901.0 42 442144.0 43 456210.0 44 471602.0 45 487312.5 46 499472.0 47 508241.0 48 516266.5 49 521509.0 50 523148.0 51 521161.5 52 512043.5 53 496256.5 54 479011.0 55 457602.0 56 430930.5 57 398348.5 58 360163.5 59 317797.5 60 273142.5 61 228596.5 62 185957.0 63 148112.5 64 115442.5 65 88880.0 66 68260.0 67 52847.0 68 40928.0 69 30788.5 70 22678.5 71 16488.0 72 11857.0 73 8278.5 74 5626.5 75 3822.0 76 2560.0 77 1681.5 78 1143.5 79 776.0 80 516.0 81 338.5 82 244.5 83 174.5 84 123.0 85 88.5 86 69.0 87 50.5 88 31.5 89 19.0 90 12.5 91 9.0 92 6.5 93 3.0 94 1.5 95 2.0 96 2.0 97 2.0 98 1.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 1.2912073196626967E-4 18-19 0.0 20-21 8.705608840499959E-4 22-23 5.665450011276746E-4 24-25 8.000201005050252E-4 26-27 0.0024344527758681034 28-29 0.0020066801171250374 30-31 0.0027083974992964644 32-33 0.001379491366019312 34-35 0.0010611110708749771 36-37 0.006694849440463127 38-39 0.0029707368739701 40-41 7.853954761824722E-4 42-43 9.585685747758431E-5 44-45 6.211280266445422E-4 46-47 0.0032961353237054665 48-49 1.9863260412445255E-4 50-51 0.0014926619914849796 52-53 0.003117855107554009 54-55 0.0017803754895799563 56-57 1.2726259339954917E-4 58-59 0.0018501167933909252 60-61 3.5692298431603235E-4 62-63 0.0013703139286802804 64-65 0.00352056093876497 66-67 0.004076673801427963 68-69 0.002000730367631174 70-71 0.0016936707371049487 72-73 0.0012381486124394875 74-75 0.02318198762183587 76-77 0.007911526409020288 78-79 0.0023450891144620786 80-81 0.005599413386479963 82-83 0.01081182070286784 84-85 0.004706145738912783 86-87 0.007188662030879423 88-89 0.010313076611789018 90-91 3.228338756746788E-4 92-93 1.1953398718822772E-5 94-95 3.536760478628576E-4 96-97 0.0038470929667559165 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 340.0 20-21 972.0 22-23 2015.0 24-25 4927.0 26-27 7575.0 28-29 17291.0 30-31 35935.0 32-33 46283.0 34-35 65784.0 36-37 97565.0 38-39 110760.0 40-41 111369.0 42-43 119290.0 44-45 139211.0 46-47 136943.0 48-49 125629.0 50-51 114463.0 52-53 110820.0 54-55 118204.0 56-57 122809.0 58-59 120647.0 60-61 114652.0 62-63 111487.0 64-65 118045.0 66-67 123550.0 68-69 125054.0 70-71 121963.0 72-73 116165.0 74-75 118993.0 76-77 118174.0 78-79 125196.0 80-81 125838.0 82-83 121320.0 84-85 123994.0 86-87 132316.0 88-89 142435.0 90-91 151618.0 92-93 161506.0 94-95 190431.0 96-97 438616.0 98-99 772564.0 100-101 6841520.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.6944044182545 #Duplication Level Percentage of deduplicated Percentage of total 1 89.29541348922385 74.73526449262359 2 7.1945479433662305 12.04286810357229 3 1.9447362264383556 4.882906206670857 4 0.6986368723162406 2.338879877325595 5 0.322268294660164 1.3486026492234486 6 0.17787065264800608 0.8932067002116656 7 0.10879072777603875 0.6373622617210816 8 0.06342115338861526 0.4246396528303134 9 0.04686713068619445 0.35302649306161893 >10 0.1416935823941572 1.9024917318796055 >50 0.004469970255102986 0.25050345328605833 >100 0.0012296851726284399 0.15899780361986693 >500 5.4271674447866E-5 0.03125057397395841 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 6.66429584342037E-5 0.0 0.0 0.0 3 0.0 6.66429584342037E-5 0.0 0.0 0.0 4 0.0 1.332859168684074E-4 0.0 0.0 8.330369804275462E-6 5 0.0 1.332859168684074E-4 0.0 0.0 8.330369804275462E-6 6 0.0 1.332859168684074E-4 0.0 0.0 8.330369804275462E-6 7 0.0 1.4161628667268286E-4 0.0 0.0 8.330369804275462E-6 8 0.0 1.749377658897847E-4 0.0 0.0 8.330369804275462E-6 9 0.0 3.41545161975294E-4 0.0 2.4991109412826386E-5 8.330369804275462E-6 10-11 0.0 3.41545161975294E-4 0.0 6.66429584342037E-5 1.6660739608550924E-5 12-13 0.0 3.41545161975294E-4 0.0 8.330369804275462E-5 1.6660739608550924E-5 14-15 0.0 4.4567478452873724E-4 0.0 9.163406784703009E-5 3.748666411923958E-5 16-17 0.0 4.540051543330127E-4 0.0 1.0829480745558101E-4 4.998221882565277E-5 18-19 0.0 4.7899626374583906E-4 0.0 1.4578147157482058E-4 5.4147403727790506E-5 20-21 0.0 5.039873731586654E-4 0.0 1.9159850549833565E-4 5.8312588629928234E-5 22-23 0.0 5.664651466907314E-4 0.0 2.2491998471543747E-4 6.247777353206596E-5 24-25 0.0 6.456036598313483E-4 0.0 3.0822368275819215E-4 6.66429584342037E-5 26-27 0.0 6.747599541463125E-4 0.0 4.3317922982232405E-4 6.66429584342037E-5 28-29 0.0 6.789251390484502E-4 0.0 0.0011579214027942894 7.913851314061689E-5 30-31 0.0 8.038806861125821E-4 0.0 0.0029781072050284775 9.163406784703009E-5 32-33 0.0 8.20541425721133E-4 0.0 0.006614313624594717 1.0829480745558101E-4 34-35 0.0 0.0010079747463173309 0.0 0.01101274888125216 1.0829480745558101E-4 36-37 0.0 0.0011537562178921515 0.0 0.017793669901932388 1.1245999235771873E-4 38-39 0.0 0.0012037384367178045 0.0 0.028027529206484793 1.207903621619942E-4 40-41 0.0 0.001366180647901176 0.0 0.03842383072222057 1.2495554706413192E-4 42-43 0.0 0.0014036673120204155 0.0 0.0483619618987212 1.332859168684074E-4 44-45 0.0 0.001549448783595236 0.0 0.0591039737613344 1.4161628667268286E-4 46-47 0.0 0.0016660739608550924 0.0 0.07083313444575426 1.4161628667268286E-4 48-49 8.330369804275462E-6 0.0016827347004636432 0.0 0.08201249072309193 1.4161628667268286E-4 50-51 8.330369804275462E-6 0.001874333205961979 0.0 0.0925962255594239 1.4161628667268286E-4 52-53 8.330369804275462E-6 0.0018826635757662545 0.0 0.1036131396255782 1.4161628667268286E-4 54-55 8.330369804275462E-6 0.0018951591304726678 0.0 0.11382200782071777 1.4161628667268286E-4 56-57 8.330369804275462E-6 0.0019159850549833562 0.0 0.12206490874204834 1.4578147157482058E-4 58-59 8.330369804275462E-6 0.0019326457945919072 0.0 0.13047858224436656 1.4994665647695833E-4 60-61 8.330369804275462E-6 0.0019701324587111466 0.0 0.13890891648629333 1.4994665647695833E-4 62-63 8.330369804275462E-6 0.001999288753026111 0.0 0.1467644552117251 1.6660739608550924E-4 64-65 8.330369804275462E-6 0.0022575302169586505 0.0 0.15382027843594642 1.6660739608550924E-4 66-67 1.6660739608550924E-5 0.0022825213263714767 0.0 0.16103437868644896 1.6660739608550924E-4 68-69 1.6660739608550924E-5 0.0023449990999035424 0.0 0.16807770635596386 1.6660739608550924E-4 70-71 1.6660739608550924E-5 0.0023824857640227823 0.0 0.1743088229695619 1.6660739608550924E-4 72-73 1.6660739608550924E-5 0.0023908161338270575 0.0 0.17880305747896852 1.8326813569406018E-4 74-75 1.6660739608550924E-5 0.002449128722456986 0.0 0.18239761204951338 1.8326813569406018E-4 76-77 1.6660739608550924E-5 0.0025324324204997403 0.0 0.18604631402378602 1.8326813569406018E-4 78-79 1.6660739608550924E-5 0.0025490931601082913 0.0 0.18849960793114517 1.8326813569406018E-4 80-81 1.6660739608550924E-5 0.002553258345010429 0.0 0.1892326804739214 1.9159850549833565E-4 82-83 2.0825924510688655E-5 0.0025657538997168423 0.0 0.18967835525845012 2.0825924510688656E-4 84-85 2.4991109412826386E-5 0.00260740574873822 0.0 0.18978248488100358 2.0825924510688656E-4 86-87 2.4991109412826386E-5 0.0026740487071724235 0.0 0.18985329302433993 2.0825924510688656E-4 88 2.4991109412826386E-5 0.002774013144823729 0.0 0.18986578857904635 2.0825924510688656E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13805 0.0 45.32231 1 GTATCAA 23870 0.0 34.25967 1 TCAACGC 28850 0.0 27.618687 4 ATCAACG 29135 0.0 27.376759 3 TATCAAC 30360 0.0 26.516016 2 CAACGCA 30075 0.0 26.507412 5 AACGCAG 30795 0.0 26.07467 6 GTACATG 35925 0.0 23.232958 1 TACATGG 36745 0.0 22.199526 2 ACGCAGA 36185 0.0 22.133831 7 CGCAGAG 37410 0.0 21.442041 8 ACATGGG 37365 0.0 21.40181 3 GTGGTAT 7655 0.0 19.237873 1 CATGGGG 28780 0.0 18.909859 4 GCAGAGT 43540 0.0 18.366528 9 GAGTACT 24760 0.0 17.909735 12-13 TGGTATC 7695 0.0 17.854887 2 AGAGTAC 38610 0.0 17.131968 10-11 CAGAGTA 41735 0.0 16.97281 10-11 GAGTACA 25750 0.0 16.278568 1 >>END_MODULE