##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138691_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4454809 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.62879037013708 34.0 31.0 34.0 31.0 34.0 2 32.81416285187535 34.0 31.0 34.0 31.0 34.0 3 32.84593772707203 34.0 31.0 34.0 31.0 34.0 4 35.24011354920042 35.0 34.0 37.0 34.0 37.0 5 35.083567219155746 35.0 34.0 37.0 34.0 37.0 6 36.39719996974057 37.0 37.0 38.0 35.0 38.0 7 36.36160181053778 37.0 37.0 38.0 35.0 38.0 8 36.32228160623721 37.0 37.0 38.0 35.0 38.0 9 37.48504144622137 38.0 38.0 39.0 35.0 39.0 10-11 37.43499609074149 38.0 37.0 39.0 35.0 39.0 12-13 37.37317817666256 38.0 37.0 39.0 35.0 39.0 14-15 38.23846027966631 38.0 38.0 41.0 35.0 41.0 16-17 38.17293614608393 38.0 38.0 41.0 35.0 41.0 18-19 38.209912815566284 38.0 38.0 41.0 35.0 41.0 20-21 38.21442023923381 38.0 38.0 41.0 35.0 41.0 22-23 38.15940926017712 38.0 38.0 41.0 35.0 41.0 24-25 38.10226268938855 38.0 38.0 41.0 35.0 41.0 26-27 37.96171486150591 38.0 38.0 41.0 34.0 41.0 28-29 37.843548524390215 38.0 38.0 40.5 34.0 41.0 30-31 37.78451671132554 38.0 38.0 40.0 34.0 41.0 32-33 37.65632250991017 38.0 37.5 40.0 34.0 41.0 34-35 37.62839324606311 38.0 37.5 40.0 34.0 41.0 36-37 37.615665987433445 38.0 37.0 40.0 34.0 41.0 38-39 37.60435695758753 38.0 37.0 40.0 34.0 41.0 40-41 37.61168333362127 38.0 37.5 40.0 34.0 41.0 42-43 37.655399227091216 38.0 38.0 40.0 34.0 41.0 44-45 37.59780503646506 38.0 37.0 40.0 34.0 41.0 46-47 37.512646377452796 38.0 37.0 40.0 33.0 41.0 48-49 37.445927983410314 38.0 37.0 40.0 33.0 41.0 50-51 37.39893130821709 38.0 37.0 40.0 33.0 41.0 52-53 37.29665853929229 38.0 37.0 40.0 33.0 41.0 54-55 37.19884460258284 38.0 37.0 40.0 33.0 41.0 56-57 37.094639981332335 38.0 37.0 40.0 33.0 41.0 58-59 36.961937154802044 38.0 36.5 40.0 32.5 41.0 60-61 36.82635006532314 38.0 36.0 40.0 32.0 41.0 62-63 36.70761780972856 38.0 36.0 39.5 32.0 41.0 64-65 36.495668425911326 38.0 35.5 39.0 31.5 41.0 66-67 36.27241135966467 38.0 35.0 39.0 31.0 41.0 68-69 36.07953216078644 38.0 35.0 38.0 31.0 40.0 70-71 35.85469884139877 37.5 35.0 38.0 31.0 40.0 72-73 35.64601414203162 37.0 35.0 38.0 31.0 39.5 74-75 35.451496976393145 37.0 35.0 38.0 31.0 39.0 76-77 34.56470179746091 36.0 33.5 38.0 28.5 38.5 78-79 35.045618750311924 36.0 34.0 38.0 30.0 38.5 80-81 34.99830628671802 36.0 34.0 38.0 30.5 38.0 82-83 34.84758533968069 36.0 34.0 38.0 30.0 38.0 84-85 34.712660480631804 35.0 34.0 38.0 30.0 38.0 86-87 34.565868608967854 35.0 34.0 38.0 30.0 38.0 88-89 34.50905906752989 35.0 34.0 38.0 30.0 38.0 90-91 34.42500199366031 35.0 34.0 38.0 30.0 38.0 92-93 34.34940908846154 35.0 34.0 38.0 30.0 38.0 94-95 34.32666796800321 35.0 34.0 38.0 30.0 38.0 96-97 34.36718676035126 35.0 34.0 38.0 30.0 38.0 98-99 34.39367240292336 35.0 34.0 38.0 30.0 38.0 100 33.52992300053091 35.0 32.0 37.0 27.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 5.0 15 8.0 16 19.0 17 31.0 18 47.0 19 107.0 20 224.0 21 556.0 22 1435.0 23 3099.0 24 6840.0 25 12695.0 26 21096.0 27 31543.0 28 43034.0 29 57266.0 30 74363.0 31 96072.0 32 125340.0 33 163896.0 34 224776.0 35 320617.0 36 526351.0 37 1590830.0 38 733546.0 39 403819.0 40 17193.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.746142427206195 19.631997690585614 13.286046607160937 24.335813275047258 2 15.528387412344728 20.830500252648317 39.97893063428757 23.66218170071938 3 19.052713595577274 24.94495274657118 29.823253926262606 26.17907973158894 4 12.923808854655721 16.97679967872921 37.72693733895213 32.372454127662934 5 13.646757919363099 37.48726376372141 35.1548180853545 13.711160231560992 6 31.610693073485308 36.751160375225965 17.995698581016605 13.642447970272126 7 27.763300289642046 32.03288850318835 22.187079176682996 18.016732030486605 8 25.440664234987402 36.20494167089992 20.50359510362846 17.850798990484215 9 25.766559239689062 16.36355228697796 20.771193557344432 37.09869491598854 10-11 24.938252122593806 26.369738859735627 28.254959976959732 20.437049040710836 12-13 25.375218106994033 23.820707015721663 28.630958139843933 22.17311673744037 14-15 22.396695346534496 25.359100693205928 26.0644171276479 26.17978683261168 16-17 22.178524088035278 28.51556914387948 26.86814574375309 22.437761024332154 18-19 22.201715045471087 27.688246566800057 28.510234669993707 21.59980371773515 20-21 22.820748126451292 26.887231044966963 28.48714421431278 21.804876614268963 22-23 22.619629180297544 26.75268075148147 28.34186956205487 22.28582050616611 24-25 22.378803080961635 26.886854359368506 28.473219306721887 22.26112325294797 26-27 22.326796501885717 27.051584416943708 28.365213408981386 22.256405672189185 28-29 22.276102758173565 27.088057727593984 28.422502705138246 22.21333680909421 30-31 22.52429037188528 26.94807927383625 28.29863205194908 22.22899830232939 32-33 22.293830188177026 27.106902831971553 28.270924210823594 22.328342769027824 34-35 22.450434209159525 27.16912782267637 28.23745683990601 22.142981128258096 36-37 22.475103547590955 27.1260233085559 28.12844267880097 22.270430465052176 38-39 22.27743464212458 27.243712479398884 28.25211370442676 22.226739174049783 40-41 22.52777373838096 27.079100622528756 28.122153667887716 22.270971971202563 42-43 22.41398425447475 27.16890113926052 27.9690673592188 22.448047247045924 44-45 22.500356077559974 27.22562565439893 27.835120061838314 22.438898206202783 46-47 22.57403300989955 27.266255835029305 27.642966229107714 22.51674492596343 48-49 22.469005142061565 27.39724992299861 27.589945297829853 22.543799637109966 50-51 22.45271093062727 27.521961534859496 27.53493727724824 22.49039025726499 52-53 22.654384870392796 27.383549243397308 27.38559213182135 22.57647375438854 54-55 22.59836924117751 27.32551401963839 27.439201121403052 22.636915617781046 56-57 22.48973907395611 27.462447383869797 27.46790572188706 22.579907820287033 58-59 22.527270426072697 27.478729459234756 27.43081879613754 22.563181318555007 60-61 22.61514542352297 27.395724522111976 27.499072031080633 22.49005802328442 62-63 22.62618519963833 27.470095120721005 27.404909624855406 22.49881005478526 64-65 22.552725959491497 27.462452097725016 27.373655566860943 22.611166375922547 66-67 22.603486954211284 27.42135908424941 27.308458579784322 22.666695381754987 68-69 22.528513142933583 27.446846364791654 27.37703163667982 22.647608855594946 70-71 22.52497130132538 27.309650638848616 27.434456345367042 22.730921714458958 72-73 22.59855794155291 27.35424846569392 27.31383012281581 22.733363469937366 74-75 22.41254376473721 27.4669205439108 27.328717206732005 22.791818484619984 76-77 22.577010300566652 27.38690347888601 27.287186558519082 22.748899662028254 78-79 22.522530352253405 27.38889267240311 27.274484901451167 22.81409207389232 80-81 22.539764116412993 27.425930323457376 27.284085860100337 22.75021970002929 82-83 22.517447064253933 27.47649024932578 27.33378281172752 22.672279874692766 84-85 22.586831504853848 27.420217470536766 27.281909153398765 22.711041871210618 86-87 22.478156156115485 27.418924033156443 27.352547940588057 22.75037187014001 88-89 22.516027856309638 27.380953653822743 27.353429105117655 22.749589384749964 90-91 22.569064755680998 27.42880161652952 27.32246160750156 22.67967202028793 92-93 22.547061054276146 27.43766890900636 27.322733488010815 22.692536548706684 94-95 22.43642538568693 27.46420126775886 27.378517147662997 22.720856198891212 96-97 22.549574744694688 27.596228248990823 27.36190406490293 22.492292941411556 98-99 23.63158416841522 29.500952803275855 27.59895188948881 19.26851113882011 100 30.274326197380685 40.927913083801506 28.797760718817813 0.0 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 875.0 1 751.5 2 887.0 3 1241.0 4 1606.0 5 2415.0 6 3205.0 7 3974.5 8 4686.5 9 4838.0 10 4456.5 11 3926.0 12 4022.0 13 5067.5 14 7686.5 15 11268.0 16 14218.5 17 16063.0 18 16667.0 19 16473.5 20 16307.0 21 16350.5 22 17194.0 23 19454.0 24 23184.5 25 28609.5 26 35646.5 27 43977.0 28 52666.5 29 62191.5 30 71842.5 31 80987.0 32 90848.5 33 100307.0 34 108732.5 35 117203.0 36 126958.0 37 136356.5 38 144305.5 39 150733.0 40 157600.5 41 164892.0 42 170568.0 43 176176.0 44 181633.5 45 186131.0 46 189059.5 47 191768.0 48 193271.5 49 192988.5 50 192196.0 51 189347.0 52 184066.0 53 177633.5 54 169850.0 55 159901.0 56 148128.5 57 135321.0 58 121588.0 59 105870.5 60 89764.0 61 74350.5 62 59984.5 63 47355.5 64 36315.5 65 27711.5 66 21041.0 67 16116.5 68 12470.0 69 9262.0 70 6623.5 71 4710.0 72 3402.5 73 2362.5 74 1613.0 75 1090.0 76 730.5 77 479.0 78 326.0 79 229.0 80 144.5 81 90.0 82 65.0 83 45.5 84 31.5 85 22.5 86 16.5 87 11.5 88 7.5 89 6.5 90 5.0 91 3.0 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 8.97906060618985E-5 18-19 0.0 20-21 6.28553008120007E-4 22-23 3.81648113704198E-4 24-25 3.5925786755083025E-4 26-27 0.0017069597127186804 28-29 0.001146089049770827 30-31 0.0018002545559942177 32-33 8.910031353159695E-4 34-35 7.355012061654011E-4 36-37 0.004491484883765488 38-39 0.0017978417425186023 40-41 4.5010219050886825E-4 42-43 1.1633534360807088E-5 44-45 4.579377162434735E-4 46-47 0.0023379922675356244 48-49 1.1993971350240515E-4 50-51 8.844265329898366E-4 52-53 0.0019939172069305625 54-55 9.760044970333787E-4 56-57 8.743325563847698E-5 58-59 0.0012125936949675088 60-61 1.7882369771642136E-4 62-63 9.426498299937489E-4 64-65 0.0021803701406795705 66-67 0.0026688464888748077 68-69 0.0012841785457641103 70-71 0.0011514558669317996 72-73 7.817534895349952E-4 74-75 0.015395208466948196 76-77 0.005188047750285343 78-79 0.0016099464486219784 80-81 0.0037554150195801563 82-83 0.00759974667511083 84-85 0.003264682017003651 86-87 0.004980592242073033 88-89 0.0057886792983082086 90-91 2.1724163026188323E-4 92-93 1.577482883127606E-5 94-95 2.2480790565904124E-4 96-97 0.0023846291737177686 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 92.0 20-21 254.0 22-23 557.0 24-25 1191.0 26-27 1918.0 28-29 4658.0 30-31 9950.0 32-33 13259.0 34-35 18959.0 36-37 29053.0 38-39 34018.0 40-41 34209.0 42-43 37594.0 44-45 44690.0 46-47 44806.0 48-49 42635.0 50-51 39985.0 52-53 39270.0 54-55 43414.0 56-57 44692.0 58-59 44255.0 60-61 42901.0 62-63 41951.0 64-65 44463.0 66-67 46584.0 68-69 46660.0 70-71 46099.0 72-73 43900.0 74-75 45241.0 76-77 46082.0 78-79 47793.0 80-81 47558.0 82-83 45413.0 84-85 45835.0 86-87 48588.0 88-89 51098.0 90-91 52294.0 92-93 54246.0 94-95 63925.0 96-97 151924.0 98-99 948236.0 100-101 1964559.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 89.91118087494687 #Duplication Level Percentage of deduplicated Percentage of total 1 92.70081881247198 83.34840087503845 2 5.509580454371994 9.907457695562245 3 1.0973648036487642 2.959960960399938 4 0.3347603875548854 1.2039480702085845 5 0.14746913496117386 0.6629562033483026 6 0.06774938108365558 0.36548561140669567 7 0.03803490047351436 0.23938339712243265 8 0.026412912650177586 0.18998529333794312 9 0.01981327798319097 0.16032916984250573 >10 0.05617233553445913 0.7751525545647261 >50 0.0011355530389304677 0.06952138110091582 >100 6.880462271822889E-4 0.1174187880672621 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 8.97906060618985E-5 0.0 0.0 0.0 3 0.0 8.97906060618985E-5 0.0 0.0 0.0 4 0.0 2.2447651515474626E-4 0.0 0.0 0.0 5 0.0 2.693718181856955E-4 0.0 2.2447651515474624E-5 0.0 6 6.734295454642387E-5 2.693718181856955E-4 0.0 2.2447651515474624E-5 0.0 7 6.734295454642387E-5 2.693718181856955E-4 0.0 2.2447651515474624E-5 0.0 8 6.734295454642387E-5 3.1426712121664476E-4 0.0 2.2447651515474624E-5 0.0 9 6.734295454642387E-5 4.0405772727854325E-4 0.0 4.489530303094925E-5 0.0 10-11 7.856678030416118E-5 4.0405772727854325E-4 0.0 4.489530303094925E-5 0.0 12-13 8.97906060618985E-5 4.265053787940179E-4 0.0 4.489530303094925E-5 0.0 14-15 8.97906060618985E-5 5.499674621291283E-4 0.0 4.489530303094925E-5 1.0101443181963581E-4 16-17 1.3468590909284774E-4 5.611912878868657E-4 0.0 4.489530303094925E-5 1.3468590909284774E-4 18-19 1.3468590909284774E-4 6.285342424332895E-4 0.0 4.489530303094925E-5 1.3468590909284774E-4 20-21 1.3468590909284774E-4 7.407725000106626E-4 0.0 6.734295454642387E-5 1.3468590909284774E-4 22-23 1.3468590909284774E-4 7.632201515261372E-4 0.0 6.734295454642387E-5 1.4590973485058506E-4 24-25 1.4590973485058506E-4 7.632201515261372E-4 0.0 1.5713356060832238E-4 1.5713356060832238E-4 26-27 1.5713356060832238E-4 7.632201515261372E-4 0.0 2.1325268939700895E-4 1.5713356060832238E-4 28-29 1.5713356060832238E-4 7.632201515261372E-4 0.0 5.611912878868657E-4 1.683573863660597E-4 30-31 1.5713356060832238E-4 8.081154545570865E-4 0.0 0.0020202886363927166 2.0202886363927163E-4 32-33 1.5713356060832238E-4 8.081154545570865E-4 0.0 0.004568097083399086 2.693718181856955E-4 34-35 1.5713356060832238E-4 9.091298863767223E-4 0.0 0.008305631060725611 2.693718181856955E-4 36-37 1.5713356060832238E-4 9.876966666808836E-4 0.0 0.014310377841115073 2.693718181856955E-4 38-39 1.5713356060832238E-4 0.0010550396212273075 0.0 0.0231323048866966 2.693718181856955E-4 40-41 1.79581212123797E-4 0.0011336064015314686 0.0 0.03262766147774237 2.693718181856955E-4 42-43 1.79581212123797E-4 0.0011560540530469432 0.0 0.04261686640212857 2.693718181856955E-4 44-45 1.79581212123797E-4 0.0013131876136552654 0.0 0.05372845390228852 2.693718181856955E-4 46-47 1.79581212123797E-4 0.0014478735227481132 0.0 0.06423395481153064 2.693718181856955E-4 48-49 1.79581212123797E-4 0.0014590973485058506 0.0 0.07533431848593283 2.693718181856955E-4 50-51 1.79581212123797E-4 0.001582559431840961 0.0 0.08617653416790709 2.693718181856955E-4 52-53 1.79581212123797E-4 0.0015937832575986983 0.0 0.09699630219836586 3.2549094697438205E-4 54-55 1.79581212123797E-4 0.0015937832575986983 0.0 0.10741201250154608 3.816100757630686E-4 56-57 1.79581212123797E-4 0.001616230909114173 0.0 0.11675023553198352 4.0405772727854325E-4 58-59 1.79581212123797E-4 0.0016723500379028596 0.0 0.12567317700938468 4.265053787940179E-4 60-61 2.805956439434328E-4 0.0016947976894183341 0.0 0.13396758424435257 4.377292045517552E-4 62-63 2.918194697011701E-4 0.0017172453409338088 0.0 0.14244157269144425 4.938483333404418E-4 64-65 2.918194697011701E-4 0.0017958121212379701 0.0 0.14996153594912826 4.938483333404418E-4 66-67 2.918194697011701E-4 0.0018070359469957074 0.0 0.1577396471992402 5.162959848559164E-4 68-69 2.918194697011701E-4 0.0018294835985111818 0.0 0.1655626537523831 5.38743636371391E-4 70-71 2.918194697011701E-4 0.0018407074242689193 0.0 0.17219593477520584 5.38743636371391E-4 72-73 2.918194697011701E-4 0.0018407074242689193 0.0 0.1776843855707394 6.060865909178149E-4 74-75 2.918194697011701E-4 0.0018743789015421312 0.0 0.18209534909353015 6.060865909178149E-4 76-77 2.918194697011701E-4 0.0018968265530576057 0.0 0.18633795522995486 6.173104166755522E-4 78-79 2.918194697011701E-4 0.0019080503788153431 0.0 0.18900922576029636 6.285342424332895E-4 80-81 2.918194697011701E-4 0.0019080503788153431 0.0 0.18997447477546175 6.397580681910269E-4 82-83 2.918194697011701E-4 0.0019080503788153431 0.0 0.19097339526790036 6.509818939487641E-4 84-85 2.918194697011701E-4 0.0019304980303308178 0.0 0.19148969125275628 6.509818939487641E-4 86-87 2.918194697011701E-4 0.002020288636392716 0.0 0.19166927246488008 6.509818939487641E-4 88 2.918194697011701E-4 0.0021325268939700894 0.0 0.19168049629063783 6.509818939487641E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5140 0.0 46.426285 1 GTATCAA 8820 0.0 35.148857 1 TCAACGC 10605 0.0 28.215244 4 ATCAACG 10775 0.0 27.731567 3 CAACGCA 10970 0.0 27.238617 5 TATCAAC 11240 0.0 26.916613 2 AACGCAG 11265 0.0 26.635834 6 GTACATG 13130 0.0 22.28351 1 ACGCAGA 13515 0.0 22.201454 7 TACATGG 13270 0.0 21.673124 2 CGCAGAG 13895 0.0 21.564423 8 ACATGGG 13765 0.0 20.501795 3 CATGGGG 10235 0.0 18.28723 4 GCAGAGT 16330 0.0 18.221838 9 GAGTACT 9205 0.0 18.191936 12-13 GTGGTAT 2740 0.0 18.175646 1 CAGAGTA 15545 0.0 17.206453 10-11 AGAGTAC 14365 0.0 17.045338 10-11 TGGTATC 2705 0.0 16.876587 2 GTACTTT 10600 0.0 15.89676 14-15 >>END_MODULE