##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138689_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8960172 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.19038987198014 33.0 31.0 34.0 30.0 34.0 2 32.444899941652906 34.0 31.0 34.0 31.0 34.0 3 32.46652062036309 34.0 31.0 34.0 31.0 34.0 4 36.092628132584956 37.0 35.0 37.0 35.0 37.0 5 35.85076000773199 37.0 35.0 37.0 35.0 37.0 6 35.94417082618504 37.0 35.0 37.0 35.0 37.0 7 35.9041879999625 37.0 35.0 37.0 35.0 37.0 8 35.916567338216275 37.0 35.0 37.0 35.0 37.0 9 37.70625731291766 39.0 37.0 39.0 35.0 39.0 10-11 37.61828930292856 39.0 37.0 39.0 35.0 39.0 12-13 37.57986403609216 39.0 37.0 39.0 35.0 39.0 14-15 38.879649743330816 40.0 38.0 41.0 35.0 41.0 16-17 38.83812671229972 40.0 38.0 41.0 35.0 41.0 18-19 38.840071094617386 40.0 38.0 41.0 35.0 41.0 20-21 38.85593829452188 40.0 38.0 41.0 35.0 41.0 22-23 38.78103875603078 40.0 38.0 41.0 34.5 41.0 24-25 38.70807248744971 40.0 38.0 41.0 34.0 41.0 26-27 38.553455956142855 40.0 38.0 41.0 34.0 41.0 28-29 38.42770565065406 40.0 38.0 41.0 34.0 41.0 30-31 38.293952947107016 40.0 38.0 41.0 34.0 41.0 32-33 38.1429578920994 40.0 38.0 41.0 33.5 41.0 34-35 38.10358205553146 40.0 37.5 41.0 33.0 41.0 36-37 38.119745821746385 40.0 38.0 41.0 33.0 41.0 38-39 38.084976932971365 40.0 37.0 41.0 33.0 41.0 40-41 38.11936500626068 40.0 37.5 41.0 33.0 41.0 42-43 38.17593042742939 40.0 38.0 41.0 33.0 41.0 44-45 38.15781426355825 40.0 37.5 41.0 33.0 41.0 46-47 38.06121626478807 40.0 37.0 41.0 33.0 41.0 48-49 37.97773150224475 40.0 37.0 41.0 33.0 41.0 50-51 37.87690082192333 40.0 37.0 41.0 33.0 41.0 52-53 37.71221839216358 40.0 36.5 41.0 33.0 41.0 54-55 37.58243161161333 39.5 36.0 41.0 32.0 41.0 56-57 37.42140427759878 39.0 36.0 41.0 32.0 41.0 58-59 37.19301397503291 39.0 35.0 41.0 31.5 41.0 60-61 37.000752001818434 39.0 35.0 40.5 31.0 41.0 62-63 36.76874113972244 38.0 35.0 40.0 31.0 41.0 64-65 36.463503876796 38.0 35.0 40.0 31.0 41.0 66-67 36.13633405414535 37.0 35.0 40.0 31.0 41.0 68-69 35.8776729575176 37.0 34.0 39.5 30.0 41.0 70-71 35.49346458114522 36.0 34.0 39.0 30.0 41.0 72-73 35.2081525698778 36.0 34.0 39.0 30.0 40.0 74-75 34.88917438144286 35.0 34.0 38.0 29.5 40.0 76-77 33.51412624290608 34.5 32.0 36.5 28.0 39.0 78-79 34.27931406917442 35.0 33.5 37.0 29.0 39.0 80-81 34.23751400861963 35.0 34.0 36.5 30.0 39.0 82-83 34.00597123138223 35.0 34.0 36.0 29.5 37.5 84-85 33.8118225717759 35.0 33.5 36.0 29.0 37.0 86-87 33.591471999708645 35.0 33.0 35.0 29.0 37.0 88-89 33.48920476145074 35.0 33.0 35.0 29.0 36.0 90-91 33.39468022092167 35.0 33.0 35.0 29.0 36.0 92-93 33.2295941308222 35.0 33.0 35.0 29.0 36.0 94-95 33.253449091266916 35.0 33.0 35.0 29.0 35.5 96-97 33.30320043906838 35.0 33.0 35.0 29.0 35.0 98-99 33.390200537598666 35.0 33.0 35.0 30.0 35.0 100 32.20650149028813 34.0 31.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 14.0 20 52.0 21 272.0 22 1208.0 23 4232.0 24 11092.0 25 24253.0 26 44044.0 27 70114.0 28 101255.0 29 136898.0 30 174543.0 31 219845.0 32 274223.0 33 348563.0 34 472960.0 35 661311.0 36 1046948.0 37 1828918.0 38 2247707.0 39 1238454.0 40 53263.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.00104953342414 19.546778789514306 13.118274961686001 24.333896715375552 2 15.763614805608642 20.664067609416424 39.87839742362089 23.693920161354047 3 19.16727714601907 24.976138850905986 29.596273375109316 26.260310627965623 4 12.926593373430778 16.813940625246925 37.59924474664103 32.66022125468127 5 13.640541721743734 37.66292655989193 34.98960734235905 13.706924376005283 6 31.819076687367165 36.55484515252609 17.96965504680044 13.656423113306307 7 28.178644338523856 31.872568964077924 21.98416503611761 17.964621661280606 8 25.660065454100657 36.05095973604078 20.404050279391956 17.884924530466602 9 26.10292525634553 16.104746649952702 20.62499469876248 37.16733339493929 10-11 25.30132234068721 26.22352003957067 27.996521718556295 20.478635901185825 12-13 25.658899181846063 23.629524076100324 28.41723908871392 22.294337653339692 14-15 22.63578199168498 25.126928367000094 25.959875547031906 26.277414094283014 16-17 22.398421903620612 28.215409039735604 26.68983960949369 22.69632944715009 18-19 22.33452103374801 27.51348969640315 28.308491176285454 21.843498093563383 20-21 23.200839930212666 26.648101875579254 28.20934347583069 21.94171471837739 22-23 22.874940890547627 26.59558407952302 28.046993556379046 22.482481473550305 24-25 22.5947624068296 26.697960890648954 28.210407129693017 22.49686957282843 26-27 22.57791523226129 26.87321024488342 28.135647055335077 22.41322746752021 28-29 22.49389669724618 27.019803068366212 28.068515674200047 22.417784560187563 30-31 22.834080616118154 26.87693354559518 27.933792522755468 22.355193315531196 32-33 22.499023345246165 27.027913365057504 27.968390941939475 22.504672347756856 34-35 22.61599543200934 27.079260751573624 27.968466317852414 22.336277498564623 36-37 22.715063925962784 26.986681694931065 27.886045898836752 22.412208480269406 38-39 22.43338433865404 27.150054467706262 28.046007320108444 22.37055387353125 40-41 22.759432191908825 27.00040913684894 27.833948534116104 22.406210137126127 42-43 22.60893244353948 27.062217743821687 27.70875103117416 22.620098781464666 44-45 22.68046992569608 27.250413695481424 27.51624141073883 22.552874968083668 46-47 22.728331256002175 27.168340262452322 27.33369788012519 22.769630601420307 48-49 22.686306133015904 27.25996142745208 27.300282523888075 22.75344991564394 50-51 22.623113714946744 27.37886255727926 27.273813518709893 22.724210209064104 52-53 22.79417691586385 27.265633156790358 27.108219179930902 22.831970747414886 54-55 22.78138557321114 27.205531893764995 27.174339614126954 22.838742918896912 56-57 22.76493299874611 27.335563552531774 27.137404517930687 22.76209893079143 58-59 22.70365926544381 27.417088645064343 27.163784218385473 22.715467871106373 60-61 22.831194222622393 27.343367434018777 27.13931298028535 22.68612536307348 62-63 22.805050119786344 27.420012560399087 27.078093472522873 22.69684384729169 64-65 22.69929988665783 27.38171044927511 27.153481492309638 22.765508171757425 66-67 22.804920529301516 27.413727215624494 26.93373774702776 22.847614508046235 68-69 22.780236260227067 27.35708442496091 27.056932501287832 22.805746813524195 70-71 22.745252959047875 27.12835159835206 27.146247935222096 22.980147507377964 72-73 22.828778893543962 27.206283678409125 27.10841466397601 22.856522764070906 74-75 22.60303250958425 27.348998870905454 27.10167339869812 22.94629522081218 76-77 22.72574534288732 27.243511681477166 27.050518063952218 22.980224911683298 78-79 22.666914972832977 27.204837584975383 27.039120626885556 23.089126815306084 80-81 22.715987265687435 27.25060617102082 27.040109688298614 22.99329687499314 82-83 22.797198599269915 27.182437114027675 27.168365622231118 22.851998664471296 84-85 22.94954996270984 27.12671885630843 27.047872063767304 22.875859117214425 86-87 22.680758155483844 27.184813504161486 27.188532638503126 22.94589570185154 88-89 22.784320522470846 27.153662825451285 27.1325575598859 22.92945909219197 90-91 22.852406469208926 27.12336112463076 27.204125251323596 22.82010715483672 92-93 22.875695472217117 27.037436095997048 27.21691305761702 22.869955374168814 94-95 22.69427282906801 27.141664538249433 27.297895035200913 22.866167597481645 96-97 22.702406051680846 27.290097153209658 27.356741924205664 22.65075487090383 98-99 23.853452626535837 29.24824351069941 27.49057740297737 19.407726459787384 100 30.824448350764687 40.69085166520602 28.484699984029294 0.0 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1341.0 1 1240.5 2 1921.0 3 2896.5 4 4032.0 5 6647.0 6 8946.0 7 10719.5 8 12015.0 9 11967.5 10 10695.5 11 9243.5 12 9675.5 13 12760.0 14 20607.5 15 31040.0 16 39172.5 17 43799.0 18 44832.0 19 43086.0 20 39866.0 21 36673.0 22 35439.0 23 37956.5 24 44108.0 25 53876.5 26 68104.5 27 83271.5 28 97628.5 29 113938.5 30 130183.0 31 146547.0 32 167208.0 33 189659.5 34 210024.0 35 230938.5 36 254538.5 37 274198.5 38 288282.0 39 299798.5 40 312875.0 41 325836.0 42 335537.0 43 346522.5 44 358251.5 45 368084.0 46 374846.0 47 381025.5 48 387521.0 49 391846.5 50 392378.5 51 388658.0 52 379219.0 53 369059.5 54 356841.0 55 338623.0 56 316470.0 57 290603.0 58 262598.5 59 230230.5 60 197344.5 61 165101.0 62 133647.5 63 105155.0 64 80069.0 65 61265.0 66 46642.0 67 34930.0 68 26024.5 69 19138.0 70 13679.5 71 9440.0 72 6422.5 73 4178.0 74 2717.5 75 1838.0 76 1236.5 77 789.5 78 516.0 79 359.0 80 252.0 81 170.5 82 117.5 83 76.0 84 55.5 85 49.5 86 45.0 87 36.0 88 24.5 89 15.0 90 9.0 91 5.0 92 3.0 93 2.5 94 2.0 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 1.0602475041773753E-4 18-19 0.0 20-21 8.984502848673349E-4 22-23 4.4089471490017644E-4 24-25 7.87066257414541E-4 26-27 0.0024681335756124726 28-29 0.0018829325517915403 30-31 0.002545868720908554 32-33 0.0014304618018736357 34-35 0.0010921084860038134 36-37 0.006700243336540094 38-39 0.0030564621507628465 40-41 8.282752462177587E-4 42-43 9.28592728167131E-5 44-45 7.154367800184372E-4 46-47 0.0033589085137767476 48-49 1.8614321114092337E-4 50-51 0.001335711466409012 52-53 0.0033247160618873196 54-55 0.001611657790254764 56-57 1.1913103316388511E-4 58-59 0.0019860398530305128 60-61 3.724310604422221E-4 62-63 0.0014616988136462643 64-65 0.003529494115702338 66-67 0.0037201942726710732 68-69 0.0017128124643655772 70-71 0.0013466504530863553 72-73 0.0015516930252437596 74-75 0.023354153242823826 76-77 0.007966078163158937 78-79 0.0021420996803367008 80-81 0.005181994122096272 82-83 0.011143023078389385 84-85 0.0053667211730567075 86-87 0.007169915676588289 88-89 0.009373188806281236 90-91 4.2769875339277976E-4 92-93 8.073273677761255E-6 94-95 2.8855153641738865E-4 96-97 0.0038139390998679955 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 186.0 20-21 670.0 22-23 1314.0 24-25 2960.0 26-27 4374.0 28-29 9741.0 30-31 21195.0 32-33 28830.0 34-35 40736.0 36-37 62781.0 38-39 75315.0 40-41 77096.0 42-43 84574.0 44-45 99678.0 46-47 99647.0 48-49 94065.0 50-51 85272.0 52-53 83326.0 54-55 90320.0 56-57 94550.0 58-59 93709.0 60-61 91189.0 62-63 88569.0 64-65 92773.0 66-67 97764.0 68-69 100088.0 70-71 98238.0 72-73 92756.0 74-75 95229.0 76-77 95403.0 78-79 101087.0 80-81 101400.0 82-83 97569.0 84-85 98029.0 86-87 104243.0 88-89 112607.0 90-91 119229.0 92-93 125294.0 94-95 144928.0 96-97 325454.0 98-99 1877367.0 100-101 3750617.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.63793391997628 #Duplication Level Percentage of deduplicated Percentage of total 1 89.721541523167 75.93845902636215 2 7.03266922190233 11.904611857688407 3 1.7722484242940113 4.499983350755358 4 0.6915916931239228 2.3413956808890832 5 0.2992761105867389 1.2665055835833958 6 0.16890215274596587 0.8577317545832878 7 0.09375485205723022 0.55546518811679 8 0.05530009614312348 0.3744388706504016 9 0.037837088457075875 0.2882207693298856 >10 0.12307628040478041 1.6091218475491509 >50 0.002883492610184086 0.16175995912297142 >100 8.097301901002555E-4 0.10312441423068879 >500 4.3734820441610454E-5 0.02095111597148109 >1k 6.559949712196209E-5 0.07823058116697974 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 6.696300026383422E-5 0.0 1.116050004397237E-5 0.0 3 0.0 6.696300026383422E-5 0.0 1.116050004397237E-5 0.0 4 0.0 8.928400035177896E-5 0.0 1.116050004397237E-5 1.116050004397237E-5 5 0.0 1.116050004397237E-4 0.0 1.116050004397237E-5 1.116050004397237E-5 6 0.0 1.116050004397237E-4 0.0 1.116050004397237E-5 1.116050004397237E-5 7 0.0 1.2276550048369607E-4 0.0 1.116050004397237E-5 1.116050004397237E-5 8 0.0 1.450865005716408E-4 0.0 1.116050004397237E-5 1.116050004397237E-5 9 0.0 2.232100008794474E-4 0.0 1.116050004397237E-5 3.348150013191711E-5 10-11 0.0 2.232100008794474E-4 0.0 1.116050004397237E-5 3.348150013191711E-5 12-13 0.0 2.232100008794474E-4 0.0 1.6740750065958554E-5 3.348150013191711E-5 14-15 0.0 3.1249400123122635E-4 0.0 2.232100008794474E-5 1.0602475041773751E-4 16-17 0.0 3.1249400123122635E-4 0.0 2.232100008794474E-5 1.116050004397237E-4 18-19 0.0 3.4039525134115726E-4 0.0 2.232100008794474E-5 1.116050004397237E-4 20-21 0.0 3.682965014510882E-4 0.0 7.25432502858204E-5 1.1718525046170988E-4 22-23 0.0 3.738767514730744E-4 0.0 8.928400035177896E-5 1.5624700061561318E-4 24-25 0.0 4.0735825160499153E-4 0.0 1.2834575050568226E-4 2.1204950083547502E-4 26-27 0.0 4.2409900167095005E-4 0.0 2.3995075094540596E-4 2.1204950083547502E-4 28-29 0.0 4.2409900167095005E-4 0.0 7.421732529241626E-4 2.1204950083547502E-4 30-31 0.0 4.687410018468395E-4 0.0 0.0020646925081348882 2.1204950083547502E-4 32-33 0.0 4.687410018468395E-4 0.0 0.004620447018204561 2.3437050092341976E-4 34-35 0.0 5.357040021106737E-4 0.0 0.008348054032891333 2.4553100096739213E-4 36-37 0.0 6.138275024184804E-4 0.0 0.013626970553690264 2.4553100096739213E-4 38-39 0.0 6.249880024624527E-4 0.0 0.022973889340517126 2.4553100096739213E-4 40-41 0.0 6.473090025503975E-4 0.0 0.03280628987925678 2.5669150101136453E-4 42-43 0.0 6.807905026823145E-4 0.0 0.04186861591496235 2.5669150101136453E-4 44-45 0.0 7.812350030780659E-4 0.0 0.05232600445616446 2.5669150101136453E-4 46-47 0.0 8.481980033419001E-4 0.0 0.06359810950057655 2.5669150101136453E-4 48-49 0.0 8.481980033419001E-4 0.0 0.07487021454498864 2.6785200105533687E-4 50-51 0.0 9.151610036057344E-4 0.0 0.08564567733744397 2.6785200105533687E-4 52-53 0.0 9.263215036497067E-4 0.0 0.09610306587864609 3.01333501187254E-4 54-55 0.0 9.263215036497067E-4 0.0 0.10630934316885882 3.4039525134115726E-4 56-57 0.0 9.263215036497067E-4 0.0 0.11522658270399275 3.459755013631435E-4 58-59 0.0 9.37482003693679E-4 0.0 0.12400989623859898 3.5155575138512966E-4 60-61 0.0 9.598030037816238E-4 0.0 0.13262022202252366 3.7945700149506057E-4 62-63 0.0 9.709635038255962E-4 1.116050004397237E-5 0.14075622655457953 3.7945700149506057E-4 64-65 0.0 0.0010379265040894304 1.116050004397237E-5 0.1481277368336233 3.7945700149506057E-4 66-67 0.0 0.0010379265040894304 1.116050004397237E-5 0.15605169186484366 3.7945700149506057E-4 68-69 0.0 0.0010602475041773753 1.116050004397237E-5 0.1639142641458222 3.7945700149506057E-4 70-71 0.0 0.0010658277541993615 1.116050004397237E-5 0.1705826629220957 4.017780015830053E-4 72-73 0.0 0.0010714080042213475 1.116050004397237E-5 0.17551002369150948 4.464200017588948E-4 74-75 0.0 0.0011048895043532646 1.116050004397237E-5 0.179745433458197 4.464200017588948E-4 76-77 0.0 0.0011830130046610711 1.116050004397237E-5 0.18381901597424694 4.464200017588948E-4 78-79 0.0 0.0012164945047929883 1.116050004397237E-5 0.18627432598392085 4.464200017588948E-4 80-81 0.0 0.0012164945047929883 1.116050004397237E-5 0.18724528948774644 4.464200017588948E-4 82-83 0.0 0.001238815504880933 1.116050004397237E-5 0.18781447498998904 4.575805018028672E-4 84-85 0.0 0.0012611365049688779 1.116050004397237E-5 0.18800978374075855 4.575805018028672E-4 86-87 0.0 0.0012834575050568228 1.116050004397237E-5 0.18814370974128622 4.687410018468395E-4 88 0.0 0.0013280995052327121 1.116050004397237E-5 0.18816603074137417 4.687410018468395E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10220 0.0 48.26221 1 GTATCAA 17825 0.0 34.069344 1 TCAACGC 21320 0.0 27.866371 4 ATCAACG 21650 0.0 27.460636 3 CAACGCA 22045 0.0 26.949924 5 AACGCAG 22670 0.0 26.497513 6 TATCAAC 22625 0.0 26.49562 2 GTACATG 30475 0.0 22.615858 1 TACATGG 29820 0.0 22.518925 2 ACGCAGA 27120 0.0 22.088928 7 CGCAGAG 28030 0.0 21.34243 8 ACATGGG 30715 0.0 21.313164 3 CATGGGG 22510 0.0 19.00384 4 GCAGAGT 32565 0.0 18.357641 9 GAGTACT 17475 0.0 18.11811 12-13 GAGTACA 21420 0.0 17.472126 1 CAGAGTA 31595 0.0 17.12955 10-11 AGTACAT 21835 0.0 16.649792 2 AGAGTAC 29105 0.0 16.4236 10-11 GTGGTAT 6235 0.0 16.24426 1 >>END_MODULE