##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2138688_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7796153 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.18307683289438 33.0 31.0 34.0 30.0 34.0 2 32.4354566925508 34.0 31.0 34.0 31.0 34.0 3 32.45500518011897 34.0 31.0 34.0 31.0 34.0 4 36.085777305807106 37.0 35.0 37.0 35.0 37.0 5 35.84039871972754 37.0 35.0 37.0 35.0 37.0 6 35.93625920373805 37.0 35.0 37.0 35.0 37.0 7 35.89368294850037 37.0 35.0 37.0 35.0 37.0 8 35.90792497273976 37.0 35.0 37.0 35.0 37.0 9 37.695563953144585 39.0 37.0 39.0 35.0 39.0 10-11 37.60754002647203 39.0 37.0 39.0 35.0 39.0 12-13 37.566454763009396 39.0 37.0 39.0 35.0 39.0 14-15 38.86124464206898 40.0 38.0 41.0 35.0 41.0 16-17 38.81836419834244 40.0 38.0 41.0 35.0 41.0 18-19 38.822693513069844 40.0 38.0 41.0 35.0 41.0 20-21 38.83897200420544 40.0 38.0 41.0 35.0 41.0 22-23 38.76080551391495 40.0 38.0 41.0 34.0 41.0 24-25 38.68526941638022 40.0 38.0 41.0 34.0 41.0 26-27 38.52921095522779 40.0 38.0 41.0 34.0 41.0 28-29 38.40179395775179 40.0 38.0 41.0 34.0 41.0 30-31 38.274150943422654 40.0 38.0 41.0 34.0 41.0 32-33 38.11624773155147 40.0 37.5 41.0 33.5 41.0 34-35 38.07237931711144 40.0 37.5 41.0 33.0 41.0 36-37 38.08637418991373 40.0 37.5 41.0 33.0 41.0 38-39 38.046953269235345 40.0 37.0 41.0 33.0 41.0 40-41 38.0797908746093 40.0 37.0 41.0 33.0 41.0 42-43 38.139735346505944 40.0 37.5 41.0 33.0 41.0 44-45 38.1171098208562 40.0 37.0 41.0 33.0 41.0 46-47 38.01520786006266 40.0 37.0 41.0 33.0 41.0 48-49 37.92538356809814 40.0 37.0 41.0 33.0 41.0 50-51 37.82329635454725 40.0 37.0 41.0 33.0 41.0 52-53 37.650084473079076 40.0 36.5 41.0 32.5 41.0 54-55 37.51446854990746 39.0 36.0 41.0 32.0 41.0 56-57 37.34871098178344 39.0 35.5 41.0 32.0 41.0 58-59 37.109353899361544 39.0 35.0 41.0 31.0 41.0 60-61 36.91090132239009 39.0 35.0 40.0 31.0 41.0 62-63 36.67159023940437 38.0 35.0 40.0 31.0 41.0 64-65 36.36033180146684 37.5 35.0 40.0 31.0 41.0 66-67 36.022607963561285 37.0 34.5 40.0 30.0 41.0 68-69 35.759242552326924 36.5 34.0 39.0 30.0 41.0 70-71 35.373663005051824 36.0 34.0 39.0 30.0 41.0 72-73 35.08936324113645 35.5 34.0 39.0 30.0 40.0 74-75 34.775860966361584 35.0 34.0 37.5 29.5 40.0 76-77 33.4069109687141 34.5 32.0 36.0 28.0 39.0 78-79 34.174282082266075 35.0 33.5 36.5 29.0 39.0 80-81 34.14212753318586 35.0 34.0 36.0 30.0 39.0 82-83 33.92152627642353 35.0 34.0 36.0 29.0 37.0 84-85 33.737545361870495 35.0 33.0 35.5 29.0 37.0 86-87 33.53317228219203 35.0 33.0 35.0 29.0 36.5 88-89 33.44206243820183 35.0 33.0 35.0 29.0 36.0 90-91 33.355590852642024 35.0 33.0 35.0 29.0 36.0 92-93 33.196795920597125 35.0 33.0 35.0 29.0 36.0 94-95 33.22361168224249 35.0 33.0 35.0 29.0 35.5 96-97 33.27833620055122 35.0 33.0 35.0 29.0 35.0 98-99 33.369934066095425 35.0 33.0 35.0 30.0 35.0 100 32.17072195589166 34.0 31.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 1.0 16 0.0 17 0.0 18 1.0 19 5.0 20 54.0 21 258.0 22 1193.0 23 3763.0 24 10088.0 25 21843.0 26 39297.0 27 62958.0 28 90697.0 29 120971.0 30 154431.0 31 193049.0 32 241377.0 33 306788.0 34 415755.0 35 584382.0 36 930441.0 37 1611380.0 38 1921396.0 39 1040755.0 40 45270.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.04465292048527 19.439805760610394 13.172137591450554 24.343403727453783 2 15.934564136953187 20.822590321149416 39.44501858801386 23.79782695388354 3 19.2082300078 24.921573499134766 29.578832021382855 26.29136447168238 4 13.198535226284042 16.78149466794713 37.2335304348183 32.78643967095053 5 13.942620161507863 37.40888615192647 34.728846393856045 13.919647292709621 6 32.04888359682012 36.269850014487915 17.791749340989075 13.889517047702887 7 28.290093845002783 31.80930389642174 21.883472528053257 18.01712973052222 8 25.951337794422454 35.61306454606522 20.330411678683063 18.105185980829262 9 26.352574147788015 15.964707208799005 20.539335233672297 37.14338340974068 10-11 25.45187992077631 26.085282061550103 27.768823931495447 20.694014086178143 12-13 25.76397615593229 23.54799860905757 28.112262547951534 22.575762687058603 14-15 22.832575245765444 24.91719954700735 25.722269688652855 26.527955518574352 16-17 22.661430999095 28.03254379522791 26.418193720341492 22.887831485335596 18-19 22.682905273921637 27.311803654956492 28.010795837382872 21.994495233739002 20-21 23.52573027937663 26.450503616289687 27.90905807658554 22.114708027748136 22-23 23.202217760855113 26.277353909416718 27.78092613542445 22.73950219430372 24-25 22.913265020035524 26.450928329548297 27.96525960982148 22.670547040594695 26-27 22.87639359333768 26.620410276856717 27.871744805623166 22.63145132418244 28-29 22.822869922035814 26.66036607649212 27.862153876982422 22.654610124489643 30-31 23.145902924110455 26.496617025433277 27.679730193151737 22.677749857304534 32-33 22.86361706109311 26.67108374224397 27.672337712628742 22.79296148403418 34-35 23.01231710095174 26.7218616076765 27.684402634137406 22.58141865723435 36-37 23.114311401833493 26.57957369183884 27.577258137572773 22.7288567687549 38-39 22.799074169933288 26.885277176235366 27.705984027284636 22.609664626546707 40-41 23.112861163606063 26.68388898493643 27.530100969152844 22.673148882304663 42-43 22.906065417592885 26.781013187143788 27.329391118316593 22.983530276946734 44-45 22.912693114467906 26.87102354739817 27.279666122269457 22.936617215864462 46-47 23.06534235794587 26.744320595863652 27.11492202616798 23.075415020022493 48-49 22.974434382746118 26.983477165560288 26.99469197847864 23.047396473214953 50-51 22.973282006326944 27.021421252878174 26.979867060213575 23.025429680581308 52-53 23.21622681294366 26.97745110750433 26.76189621741211 23.044425862139896 54-55 23.191872589266055 26.832522871460263 26.87217265343299 23.1034318858407 56-57 23.14036452906455 27.02305706561991 26.763635288981664 23.07294311633388 58-59 23.059357650150332 27.061303480452164 26.797190894487983 23.082147974909525 60-61 23.14592879724123 27.019740311945707 26.83318536102892 23.001145529784147 62-63 23.179724582161874 27.063662266836886 26.77503187101443 22.981581279986806 64-65 23.10631414843862 27.000268318433935 26.813311938802116 23.08010559432533 66-67 23.2267436062835 27.039999581102197 26.600041381558842 23.133215431055465 68-69 23.1116140238342 26.988400892348324 26.752161656138046 23.147823427679423 70-71 23.132459619213435 26.764088400720336 26.791042832531602 23.312409147534627 72-73 23.19202967636811 26.863993906020983 26.70614720182229 23.23782921578862 74-75 22.959143621156702 26.98221539354133 26.73560355065736 23.323037434644608 76-77 23.111804005381945 26.889523831202773 26.670034917978462 23.32863724543682 78-79 22.992863378519527 26.928500347398405 26.693607994890044 23.385028279192028 80-81 23.147392461275306 26.86531808339765 26.63735215020543 23.349937305121614 82-83 23.222526369789584 26.826531296945678 26.79556838844012 23.155373944824614 84-85 23.23958322390422 26.812925241531936 26.6742128982782 23.273278636285642 86-87 23.017982569632107 26.914730626033155 26.784202939918494 23.283083864416245 88-89 23.17127703450721 26.76917288336722 26.774599683074896 23.284950399050672 90-91 23.151839551155966 26.75138075737824 26.831282733968703 23.265496957497085 92-93 23.279743478186937 26.748097868133573 26.805001878480578 23.167156775198908 94-95 23.04795899416499 26.772585290054092 26.90349990234192 23.275955813439 96-97 23.023600095732103 26.897492008502148 26.978157362406822 23.100750533358923 98-99 24.207177564496867 28.904337109685624 27.09560430857821 19.792881017239303 100 31.376022496805284 40.552579655345745 28.07139784784897 0.0 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1340.0 1 1199.5 2 1735.0 3 2602.5 4 3607.5 5 5792.0 6 7744.0 7 9417.5 8 10735.0 9 10816.0 10 9719.5 11 8407.0 12 8904.5 13 11811.5 14 18692.5 15 27750.5 16 34946.5 17 39197.0 18 40080.0 19 37978.0 20 34419.0 21 31053.0 22 29502.0 23 31041.5 24 35765.0 25 43839.5 26 55801.0 27 69088.0 28 81123.0 29 95214.0 30 108774.5 31 121009.0 32 137010.5 33 154715.0 34 171666.5 35 189157.0 36 208965.0 37 224526.5 38 236399.5 39 248272.0 40 261839.0 41 274599.0 42 282790.0 43 293725.5 44 305961.0 45 316317.0 46 326052.0 47 336323.0 48 344982.5 49 349430.0 50 348642.0 51 345855.5 52 337820.5 53 325689.5 54 314392.5 55 301068.5 56 283702.5 57 261843.0 58 238094.0 59 211420.0 60 184896.0 61 158269.5 62 130622.5 63 105965.5 64 84692.0 65 68053.0 66 55246.5 67 41252.0 68 29211.0 69 22085.0 70 15783.0 71 10416.5 72 7131.0 73 4903.0 74 3348.0 75 2325.0 76 1534.5 77 954.5 78 643.0 79 439.5 80 287.0 81 189.0 82 141.0 83 110.5 84 77.5 85 48.0 86 35.0 87 26.5 88 17.0 89 11.0 90 7.5 91 4.5 92 2.5 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 1.6033548854159225E-4 18-19 0.0 20-21 9.107424314578132E-4 22-23 5.131422464302778E-4 24-25 7.24966505585097E-4 26-27 0.0024068113145290985 28-29 0.001971705448785529 30-31 0.0023865098766129365 32-33 0.0013804514527800131 34-35 0.0010490023987188184 36-37 0.006427521200074864 38-39 0.0030197476396897514 40-41 7.948699096034194E-4 42-43 4.0112968816980306E-5 44-45 6.149943045445039E-4 46-47 0.003222874278343024 48-49 2.701522682088344E-4 50-51 0.001506325551421996 52-53 0.003044767930974686 54-55 0.0016392221039294014 56-57 2.0281432399341985E-4 58-59 0.0018771601089984749 60-61 4.082148563933535E-4 62-63 0.0013143287899365374 64-65 0.003139151120331111 66-67 0.004111805694850887 68-69 0.0018108276723504018 70-71 0.0018760882499247189 72-73 0.0014204316330606185 74-75 0.023740361933569928 76-77 0.008560101810783155 78-79 0.002233673727362302 80-81 0.0052657017919268126 82-83 0.011090218496276756 84-85 0.0048671700277568754 86-87 0.007335475292118632 88-89 0.009785371177578078 90-91 3.685077004290351E-4 92-93 5.636847773261932E-5 94-95 4.990854738581427E-4 96-97 0.0033963206000271703 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 198.0 20-21 587.0 22-23 1223.0 24-25 2881.0 26-27 4237.0 28-29 9409.0 30-31 20455.0 32-33 27117.0 34-35 38522.0 36-37 58009.0 38-39 67840.0 40-41 68956.0 42-43 76190.0 44-45 90185.0 46-47 90816.0 48-49 83729.0 50-51 76225.0 52-53 74653.0 54-55 80858.0 56-57 84422.0 58-59 82556.0 60-61 80438.0 62-63 77999.0 64-65 83246.0 66-67 87370.0 68-69 89566.0 70-71 87366.0 72-73 82657.0 74-75 84597.0 76-77 84986.0 78-79 89141.0 80-81 89982.0 82-83 86470.0 84-85 87135.0 86-87 93229.0 88-89 99170.0 90-91 105110.0 92-93 109538.0 94-95 127870.0 96-97 283996.0 98-99 1628187.0 100-101 3199032.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.19800120068044 #Duplication Level Percentage of deduplicated Percentage of total 1 91.02073374524579 78.45805316659512 2 6.282224341878163 10.830303627283156 3 1.4839808984805558 3.837485618070414 4 0.5269044098113582 1.8167242779825308 5 0.2550131652628136 1.0990812562756662 6 0.12689399461425457 0.6562805220071193 7 0.0857722712202548 0.5175378836340028 8 0.04891533426787519 0.3373123233563193 9 0.031704594212236384 0.24595853849760946 >10 0.13316927995417957 1.800401229761642 >50 0.0035143705362276428 0.19920902148601616 >100 0.001099362189175111 0.15679784042758485 >500 7.42323271534053E-5 0.04485469462267844 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.282683908332738E-5 0.0 2 0.0 7.696103449996428E-5 0.0 1.282683908332738E-5 0.0 3 0.0 7.696103449996428E-5 0.0 3.848051724998214E-5 0.0 4 0.0 1.924025862499107E-4 0.0 3.848051724998214E-5 0.0 5 0.0 1.924025862499107E-4 0.0 3.848051724998214E-5 0.0 6 5.130735633330952E-5 1.924025862499107E-4 0.0 5.130735633330952E-5 0.0 7 5.130735633330952E-5 1.924025862499107E-4 0.0 5.130735633330952E-5 0.0 8 5.130735633330952E-5 2.0522942533323808E-4 0.0 5.130735633330952E-5 0.0 9 5.130735633330952E-5 5.77207758749732E-4 0.0 8.978787358329166E-5 1.282683908332738E-5 10-11 5.130735633330952E-5 5.77207758749732E-4 0.0 1.0902813220828273E-4 1.282683908332738E-5 12-13 5.130735633330952E-5 5.77207758749732E-4 0.0 1.346818103749375E-4 1.282683908332738E-5 14-15 5.130735633330952E-5 8.337445404162796E-4 0.0 1.4109522991660118E-4 3.848051724998214E-5 16-17 5.130735633330952E-5 8.46571379499607E-4 0.0 2.3088310349989282E-4 3.848051724998214E-5 18-19 5.130735633330952E-5 9.171189944579076E-4 0.0 2.629502012082113E-4 5.130735633330952E-5 20-21 5.130735633330952E-5 0.0010197337071245266 0.0 2.821904598332023E-4 6.41341954166369E-5 22-23 6.41341954166369E-5 0.0011287618393328095 0.0 3.0784413799985714E-4 7.054761495830059E-5 24-25 6.41341954166369E-5 0.001218549712916101 0.0 3.3349781616651185E-4 8.337445404162796E-5 26-27 6.41341954166369E-5 0.0012634436497077467 0.0 5.002467242497678E-4 8.978787358329166E-5 28-29 6.41341954166369E-5 0.0012762704887910744 0.0 0.0010261471266661904 9.620129312495535E-5 30-31 6.41341954166369E-5 0.0014366059773326665 0.0 0.002558954397123812 1.1544155174994641E-4 32-33 6.41341954166369E-5 0.0015007401727493033 0.0 0.005714356811622348 1.1544155174994641E-4 34-35 7.696103449996428E-5 0.00173803669579086 0.0 0.009722744025162154 1.1544155174994641E-4 36-37 7.696103449996428E-5 0.0019496795406657617 0.0 0.016020722015075897 1.1544155174994641E-4 38-39 7.696103449996428E-5 0.0019753332188324163 0.0 0.026269366442654474 1.1544155174994641E-4 40-41 7.696103449996428E-5 0.0021677358050823273 0.0 0.03746719696239927 1.1544155174994641E-4 42-43 8.978787358329166E-5 0.0022446968395822917 0.0 0.04756833274051959 1.1544155174994641E-4 44-45 9.620129312495535E-5 0.0025717812362071393 0.0 0.058419838605014554 1.1544155174994641E-4 46-47 1.0261471266661904E-4 0.0028219045983320233 0.0 0.07067588334913386 1.1544155174994641E-4 48-49 1.0261471266661904E-4 0.0028219045983320233 0.0 0.08236754717358677 1.1544155174994641E-4 50-51 1.0261471266661904E-4 0.003116921897248553 0.0 0.0938411547336231 1.1544155174994641E-4 52-53 1.0261471266661904E-4 0.003142575575415208 0.0 0.10537248306953442 1.282683908332738E-4 54-55 1.0261471266661904E-4 0.003155402414498535 0.0 0.11608289370411279 1.4109522991660118E-4 56-57 1.0261471266661904E-4 0.00318105609266519 0.0 0.1261263087063581 1.5392206899992857E-4 58-59 1.1544155174994641E-4 0.003187469512206854 0.0 0.1354963146567288 1.6674890808325593E-4 60-61 1.1544155174994641E-4 0.003225950029456836 0.0 0.1444622751759746 1.6674890808325593E-4 62-63 1.1544155174994641E-4 0.0032836708053318093 0.0 0.15295364264913736 1.795757471665833E-4 64-65 1.1544155174994641E-4 0.003694129655998285 0.0 0.1610666183693419 1.795757471665833E-4 66-67 1.282683908332738E-4 0.0037518504318732587 0.0 0.16914752699183816 1.795757471665833E-4 68-69 1.282683908332738E-4 0.0038737054031648685 0.0 0.17699113909129285 1.795757471665833E-4 70-71 1.282683908332738E-4 0.003963493276748161 0.0 0.1844691862768727 1.795757471665833E-4 72-73 1.282683908332738E-4 0.0039891469549148155 0.0 0.1899141794677452 1.924025862499107E-4 74-75 1.282683908332738E-4 0.00413665560437308 0.0 0.19426889133653483 1.924025862499107E-4 76-77 1.282683908332738E-4 0.0042969910929146725 0.0 0.19867491056165779 1.924025862499107E-4 78-79 1.282683908332738E-4 0.004348298449247981 0.0 0.2015352956772398 1.924025862499107E-4 80-81 1.282683908332738E-4 0.004348298449247981 0.0 0.20252937570619767 1.988160057915744E-4 82-83 1.282683908332738E-4 0.004354711868789645 0.0 0.20306168952815573 2.3088310349989282E-4 84-85 1.6674890808325593E-4 0.0043739521274146365 0.0 0.20328615921211396 2.3088310349989282E-4 86-87 1.6674890808325593E-4 0.004438086322831273 0.0 0.20340160076386393 2.3088310349989282E-4 88 1.6674890808325593E-4 0.004617662069997856 0.0 0.20342084102248892 2.3088310349989282E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8595 0.0 49.15551 1 GTATCAA 15585 0.0 36.522026 1 TCAACGC 19330 0.0 28.78905 4 ATCAACG 19750 0.0 28.197578 3 TATCAAC 20145 0.0 27.94981 2 CAACGCA 20125 0.0 27.651793 5 AACGCAG 20565 0.0 27.219578 6 GTACATG 28265 0.0 23.341904 1 TACATGG 28160 0.0 23.079689 2 ACGCAGA 24410 0.0 22.881657 7 ACATGGG 28310 0.0 22.349451 3 CGCAGAG 26210 0.0 21.310236 8 CATGGGG 21080 0.0 19.634062 4 GTGGTAT 4600 0.0 19.509481 1 GCAGAGT 29480 0.0 18.918648 9 TGGTATC 4605 0.0 18.509432 2 GAGTACA 20015 0.0 18.344751 1 GAGTACT 15230 0.0 17.57015 12-13 AGTACAT 20335 0.0 17.370907 2 CAGAGTA 28190 0.0 17.218773 10-11 >>END_MODULE